Moc10g02870 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g02870
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptionglycine-rich cell wall structural protein 2-like
Locationchr10: 1974123 .. 1974530 (-)
RNA-Seq ExpressionMoc10g02870
SyntenyMoc10g02870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTGGGGACCCAGCGGGGGAAATAATAATGGGGGAGGGAATCCCAATGGGAACTATGGCTCTGCCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCGAGCCCCGGGAGTGGCTGGGGTTTCGGATCGGGCTCCGGCCGCTCCCCGACCGGTTTTGGGAAAGGTTATGGATATGGGTTCGGGTCGGGGTCGGGGTCGGGATCGGGATATGGCTACGGAAGTGGGAGTGGTGGTGCTCGTGGTGGTGGATATGGATTCGGAAGTGGCTACGGTAATTCTTGTGGAGGCGGTACCGGTGGCGGATACAGTGGTCCAGGTGGTGGCGGATATGGTGGTTCAGGTGGCAACGAGTATCGTTCGTCAACCGTTACGAAAGACGGCAGAAGCAAACATGGGTAG

mRNA sequence

ATGTCTTGGGGACCCAGCGGGGGAAATAATAATGGGGGAGGGAATCCCAATGGGAACTATGGCTCTGCCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCGAGCCCCGGGAGTGGCTGGGGTTTCGGATCGGGCTCCGGCCGCTCCCCGACCGGTTTTGGGAAAGGCGGTACCGGTGGCGGATACAGTGGTCCAGGTGGTGGCGGATATGGTGGTTCAGGTGGCAACGAGTATCGTTCGTCAACCGTTACGAAAGACGGCAGAAGCAAACATGGGTAG

Coding sequence (CDS)

ATGTCTTGGGGACCCAGCGGGGGAAATAATAATGGGGGAGGGAATCCCAATGGGAACTATGGCTCTGCCCATGGTCCTAATTGGGACTACAATTGGGGTTGGGGTTCGAGCCCCGGGAGTGGCTGGGGTTTCGGATCGGGCTCCGGCCGCTCCCCGACCGGTTTTGGGAAAGGCGGTACCGGTGGCGGATACAGTGGTCCAGGTGGTGGCGGATATGGTGGTTCAGGTGGCAACGAGTATCGTTCGTCAACCGTTACGAAAGACGGCAGAAGCAAACATGGGTAG

Protein sequence

MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGGTGGGYSGPGGGGYGGSGGNEYRSSTVTKDGRSKHG
Homology
BLAST of Moc10g02870 vs. NCBI nr
Match: XP_022141166.1 (putative glycine-rich cell wall structural protein 1 [Momordica charantia])

HSP 1 Score: 156.0 bits (393), Expect = 1.6e-34
Identity = 93/135 (68.89%), Postives = 93/135 (68.89%), Query Frame = 0

Query: 1   MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGK--- 60
           MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGK   
Sbjct: 35  MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYG 94

Query: 61  --------------------------------------GGTGGGYSGPGGGGYGGSGGNE 95
                                                 GGTGGGY GPGGGGYGGSGGNE
Sbjct: 95  YGFGSGSGSGSGYGYGSGSGGARGGGYGXGSGYGNSXGGGTGGGYXGPGGGGYGGSGGNE 154

BLAST of Moc10g02870 vs. NCBI nr
Match: XP_022922583.1 (glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG7014856.1 hypothetical protein SDJN02_22486, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 6.1e-18
Identity = 69/128 (53.91%), Postives = 73/128 (57.03%), Query Frame = 0

Query: 8   GNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG--------- 67
           G+ NGGGNP G YGSAHGPNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKG         
Sbjct: 39  GSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFGSGS 98

Query: 68  --------------------------------GTGGGYSGPGGGGYGGSGGNEYRSSTVT 95
                                           G GGGY G  GGGYG S G EY  S VT
Sbjct: 99  GSGSGYGYGSGGGGAHGGGYGSGSGYGNSGDSGDGGGYGGSSGGGYGNSSGGEYPPSAVT 158

BLAST of Moc10g02870 vs. NCBI nr
Match: XP_038899364.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 100.5 bits (249), Expect = 8.0e-18
Identity = 72/128 (56.25%), Postives = 75/128 (58.59%), Query Frame = 0

Query: 1   MSWG-PSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG- 60
           MSWG P+GG   GGGNP G YGSAHGPNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKG 
Sbjct: 41  MSWGSPNGG--GGGGNPTGAYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGY 100

Query: 61  ----------------------------GTGGGYSGPG----GGGYGGSGGNEYRSSTVT 95
                                       G+G GY   G    GGGYGG  G EYRS T T
Sbjct: 101 GYGYGYGSGSGSGFGYGSGSGGAHGGGYGSGSGYGNSGGNGSGGGYGGPNGEEYRSPTTT 160

BLAST of Moc10g02870 vs. NCBI nr
Match: XP_004146895.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN53182.1 hypothetical protein Csa_015364 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 8.0e-18
Identity = 69/122 (56.56%), Postives = 72/122 (59.02%), Query Frame = 0

Query: 1   MSWG-PSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG- 60
           MSWG PSGG   G GNP G YGS HGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG 
Sbjct: 40  MSWGSPSGGGGGGNGNPTGAYGSGHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGY 99

Query: 61  ----------------------------GTGGGYSGPG----GGGYGGSGGNEYRSSTVT 89
                                       G+G GY   G    GGGYGG  G+EYRS   T
Sbjct: 100 GYGFGSGSGSGSGYGYGSGSGGAHGGGYGSGSGYGNSGGGGSGGGYGGPSGDEYRSPMTT 159

BLAST of Moc10g02870 vs. NCBI nr
Match: XP_016901488.1 (PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo] >KAA0044686.1 glycine-rich cell wall structural protein 2 [Cucumis melo var. makuwa] >TYK16898.1 glycine-rich cell wall structural protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.4e-17
Identity = 67/121 (55.37%), Postives = 70/121 (57.85%), Query Frame = 0

Query: 1   MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG-- 60
           MSWG   G   G GNP G YGS H PNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG  
Sbjct: 40  MSWGSPNGGGGGNGNPTGAYGSGHAPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYG 99

Query: 61  ---------------------------GTGGGY----SGPGGGGYGGSGGNEYRSSTVTK 89
                                      G+G GY     G GGGGYGG  G+EYRS T T+
Sbjct: 100 YGFGSGSGSGSGYGYGSGSGGAHGGGYGSGSGYGNSGGGGGGGGYGGPSGDEYRSPTTTR 159

BLAST of Moc10g02870 vs. ExPASy TrEMBL
Match: A0A6J1CI83 (putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3673 GN=LOC111011624 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.8e-35
Identity = 93/135 (68.89%), Postives = 93/135 (68.89%), Query Frame = 0

Query: 1   MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGK--- 60
           MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGK   
Sbjct: 35  MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYG 94

Query: 61  --------------------------------------GGTGGGYSGPGGGGYGGSGGNE 95
                                                 GGTGGGY GPGGGGYGGSGGNE
Sbjct: 95  YGFGSGSGSGSGYGYGSGSGGARGGGYGXGSGYGNSXGGGTGGGYXGPGGGGYGGSGGNE 154

BLAST of Moc10g02870 vs. ExPASy TrEMBL
Match: A0A6J1E737 (glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111430548 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 3.0e-18
Identity = 69/128 (53.91%), Postives = 73/128 (57.03%), Query Frame = 0

Query: 8   GNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG--------- 67
           G+ NGGGNP G YGSAHGPNWDYNWGWGSSPGSGWG+GSGSGRSPTGFGKG         
Sbjct: 39  GSPNGGGNPTGGYGSAHGPNWDYNWGWGSSPGSGWGYGSGSGRSPTGFGKGYGYGFGSGS 98

Query: 68  --------------------------------GTGGGYSGPGGGGYGGSGGNEYRSSTVT 95
                                           G GGGY G  GGGYG S G EY  S VT
Sbjct: 99  GSGSGYGYGSGGGGAHGGGYGSGSGYGNSGDSGDGGGYGGSSGGGYGNSSGGEYPPSAVT 158

BLAST of Moc10g02870 vs. ExPASy TrEMBL
Match: A0A0A0KXP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025120 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.9e-18
Identity = 69/122 (56.56%), Postives = 72/122 (59.02%), Query Frame = 0

Query: 1   MSWG-PSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG- 60
           MSWG PSGG   G GNP G YGS HGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG 
Sbjct: 40  MSWGSPSGGGGGGNGNPTGAYGSGHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGY 99

Query: 61  ----------------------------GTGGGYSGPG----GGGYGGSGGNEYRSSTVT 89
                                       G+G GY   G    GGGYGG  G+EYRS   T
Sbjct: 100 GYGFGSGSGSGSGYGYGSGSGGAHGGGYGSGSGYGNSGGGGSGGGYGGPSGDEYRSPMTT 159

BLAST of Moc10g02870 vs. ExPASy TrEMBL
Match: A0A5A7TRC6 (Glycine-rich cell wall structural protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00320 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.6e-18
Identity = 67/121 (55.37%), Postives = 70/121 (57.85%), Query Frame = 0

Query: 1   MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG-- 60
           MSWG   G   G GNP G YGS H PNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG  
Sbjct: 40  MSWGSPNGGGGGNGNPTGAYGSGHAPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYG 99

Query: 61  ---------------------------GTGGGY----SGPGGGGYGGSGGNEYRSSTVTK 89
                                      G+G GY     G GGGGYGG  G+EYRS T T+
Sbjct: 100 YGFGSGSGSGSGYGYGSGSGGAHGGGYGSGSGYGNSGGGGGGGGYGGPSGDEYRSPTTTR 159

BLAST of Moc10g02870 vs. ExPASy TrEMBL
Match: A0A1S4DZT0 (glycine-rich cell wall structural protein 2 OS=Cucumis melo OX=3656 GN=LOC103494444 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 6.6e-18
Identity = 67/121 (55.37%), Postives = 70/121 (57.85%), Query Frame = 0

Query: 1   MSWGPSGGNNNGGGNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG-- 60
           MSWG   G   G GNP G YGS H PNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKG  
Sbjct: 40  MSWGSPNGGGGGNGNPTGAYGSGHAPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGYG 99

Query: 61  ---------------------------GTGGGY----SGPGGGGYGGSGGNEYRSSTVTK 89
                                      G+G GY     G GGGGYGG  G+EYRS T T+
Sbjct: 100 YGFGSGSGSGSGYGYGSGSGGAHGGGYGSGSGYGNSGGGGGGGGYGGPSGDEYRSPTTTR 159

BLAST of Moc10g02870 vs. TAIR 10
Match: AT5G61660.1 (glycine-rich protein )

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-11
Identity = 46/70 (65.71%), Postives = 52/70 (74.29%), Query Frame = 0

Query: 14 GNPNGNYGSAHGPNWDYNWGWGSSPGSGWGFGSGSGRSPTGFGKGGTGGGYSGPGGG-GY 73
          GN  G  GS  GPNW+YNWGWGS+PGSGWG+G+GSGRSPTG+G+G   G  SG G G GY
Sbjct: 28 GNMPGESGSGRGPNWEYNWGWGSAPGSGWGYGAGSGRSPTGWGRGSGYGYGSGSGSGTGY 87

Query: 74 G-GSGGNEYR 82
          G GSGG   R
Sbjct: 88 GYGSGGGGAR 97

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022141166.11.6e-3468.89putative glycine-rich cell wall structural protein 1 [Momordica charantia][more]
XP_022922583.16.1e-1853.91glycine-rich cell wall structural protein 2-like [Cucurbita moschata] >KAG701485... [more]
XP_038899364.18.0e-1856.25glycine-rich cell wall structural protein 2-like [Benincasa hispida][more]
XP_004146895.18.0e-1856.56glycine-rich cell wall structural protein 2 [Cucumis sativus] >KGN53182.1 hypoth... [more]
XP_016901488.11.4e-1755.37PREDICTED: glycine-rich cell wall structural protein 2 [Cucumis melo] >KAA004468... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CI837.8e-3568.89putative glycine-rich cell wall structural protein 1 OS=Momordica charantia OX=3... [more]
A0A6J1E7373.0e-1853.91glycine-rich cell wall structural protein 2-like OS=Cucurbita moschata OX=3662 G... [more]
A0A0A0KXP23.9e-1856.56Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G025120 PE=4 SV=1[more]
A0A5A7TRC66.6e-1855.37Glycine-rich cell wall structural protein 2 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S4DZT06.6e-1855.37glycine-rich cell wall structural protein 2 OS=Cucumis melo OX=3656 GN=LOC103494... [more]
Match NameE-valueIdentityDescription
AT5G61660.13.5e-1165.71glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g02870.1Moc10g02870.1mRNA