Moc10g02780 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc10g02780
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	zinc finger CCCH domain-containing protein 54
Location	chr10: 1914102 .. 1914683 (-)
RNA-Seq Expression	Moc10g02780
Synteny	Moc10g02780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAAGTGGAAGACGCGGCGGCGGTGTTCGGCTCCGACGAGTTTCGGATGTTCGCGTACAAGATCCAACGGTGTCCGAGGACGCGCAGCCACGACTGGACCGAGTGTCCGTACGCCCACCGCGGCGAGAAGGCTCAACGCCGCGACCTACGGCGGTTCAACTACTCCGCCGTGGCCTGCCCGGCGTTCCGTAACGGCAACTGCCCTAGAGGTGACTTCTGCGAGTATGCTCACGGTGTGTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGCGCTTGCAATGCCGGCCGGTTTTGCCAACGGAAAGTTTGTTTCTTTGCACACACGCCGGAGCAGCTCCGGTCAGAGACGAAACAAAAGTTTCATTTCAATGCTCACCGAACACGTGTGCCGGTGGTTGCCGTTGAAGCTCCGTTGGAGAGTAAGAACGACGACGTTTCGAATATTGTGAACGGTCTGAAAGGGCTTACGGTGAGAGAGATCAGAGAACGGAAAAATGACCGAAACTTCGGGTGGGAGGTATCGGATTCCGATCTGCCGCATATCGGTTGGATACGCGAGCTGTTACAGTAA

mRNA sequence

ATGGAGCAAGTGGAAGACGCGGCGGCGGTGTTCGGCTCCGACGAGTTTCGGATGTTCGCGTACAAGATCCAACGGTGTCCGAGGACGCGCAGCCACGACTGGACCGAGTGTCCGTACGCCCACCGCGGCGAGAAGGCTCAACGCCGCGACCTACGGCGGTTCAACTACTCCGCCGTGGCCTGCCCGGCGTTCCGTAACGGCAACTGCCCTAGAGGTGACTTCTGCGAGTATGCTCACGGTGTGTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGCGCTTGCAATGCCGGCCGGTTTTGCCAACGGAAAGTTTGTTTCTTTGCACACACGCCGGAGCAGCTCCGGTCAGAGACGAAACAAAAGTTTCATTTCAATGCTCACCGAACACGTGTGCCGGTGGTTGCCGTTGAAGCTCCGTTGGAGAGTAAGAACGACGACGTTTCGAATATTGTGAACGGTCTGAAAGGGCTTACGGTGAGAGAGATCAGAGAACGGAAAAATGACCGAAACTTCGGGTGGGAGGTATCGGATTCCGATCTGCCGCATATCGGTTGGATACGCGAGCTGTTACAGTAA

Coding sequence (CDS)

ATGGAGCAAGTGGAAGACGCGGCGGCGGTGTTCGGCTCCGACGAGTTTCGGATGTTCGCGTACAAGATCCAACGGTGTCCGAGGACGCGCAGCCACGACTGGACCGAGTGTCCGTACGCCCACCGCGGCGAGAAGGCTCAACGCCGCGACCTACGGCGGTTCAACTACTCCGCCGTGGCCTGCCCGGCGTTCCGTAACGGCAACTGCCCTAGAGGTGACTTCTGCGAGTATGCTCACGGTGTGTTCGAGTACTGGCTCCACCCGGCCCGGTACCGGACCCGCGCTTGCAATGCCGGCCGGTTTTGCCAACGGAAAGTTTGTTTCTTTGCACACACGCCGGAGCAGCTCCGGTCAGAGACGAAACAAAAGTTTCATTTCAATGCTCACCGAACACGTGTGCCGGTGGTTGCCGTTGAAGCTCCGTTGGAGAGTAAGAACGACGACGTTTCGAATATTGTGAACGGTCTGAAAGGGCTTACGGTGAGAGAGATCAGAGAACGGAAAAATGACCGAAACTTCGGGTGGGAGGTATCGGATTCCGATCTGCCGCATATCGGTTGGATACGCGAGCTGTTACAGTAA

Protein sequence

MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHIGWIRELLQ

Homology

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BLAST of Moc10g02780 vs. NCBI nr
Match: XP_022141094.1 (zinc finger CCCH domain-containing protein 54 isoform X2 [Momordica charantia])

HSP 1 Score: 418.3 bits (1074), Expect = 3.6e-113
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 60
           MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA
Sbjct: 1   MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 60

Query: 61  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 120
           CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET
Sbjct: 61  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 120

Query: 121 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 180
           KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS
Sbjct: 121 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 180

Query: 181 DLPHIGWIRELLQ 194
           DLPHIGWIRELLQ
Sbjct: 181 DLPHIGWIRELLQ 193

[Close]

BLAST of Moc10g02780 vs. NCBI nr
Match: XP_022141093.1 (zinc finger CCCH domain-containing protein 54 isoform X1 [Momordica charantia])

HSP 1 Score: 418.3 bits (1074), Expect = 3.6e-113
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 60
           MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA
Sbjct: 26  MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 85

Query: 61  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 120
           CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET
Sbjct: 86  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 145

Query: 121 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 180
           KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS
Sbjct: 146 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 205

Query: 181 DLPHIGWIRELLQ 194
           DLPHIGWIRELLQ
Sbjct: 206 DLPHIGWIRELLQ 218

[Close]

BLAST of Moc10g02780 vs. NCBI nr
Match: XP_038878131.1 (zinc finger CCCH domain-containing protein 54 [Benincasa hispida])

HSP 1 Score: 299.3 bits (765), Expect = 2.4e-77
Identity = 139/189 (73.54%), Postives = 155/189 (82.01%), Query Frame = 0


Query: 6   DAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFR 65
           D  A+F SDEFRM+AYKIQRCPR RSHDWTECPYAHRGEKAQRRD RRFNY+AVACPAFR
Sbjct: 26  DDTAMFSSDEFRMYAYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVACPAFR 85

Query: 66  NGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFH 125
           +G+CP+GDFCE+AHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+P++LR ETKQKF+
Sbjct: 86  SGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPKELRPETKQKFN 145

Query: 126 FNAHRTRVPVVAVEAPLESKNDDVSNI-VNGLKGLTVREIRERKNDRNFGWEVSDSDLPH 185
           FNAHR RV V  VE+P E K D  S I V G  G        R+  R+FG EVS+ DLPH
Sbjct: 146 FNAHRQRVAVADVESPSEEKFDGASEIPVRGTSG-------GREKQRSFGLEVSELDLPH 205

Query: 186 IGWIRELLQ 194
           + WI ELLQ
Sbjct: 206 VEWISELLQ 207

[Close]

BLAST of Moc10g02780 vs. NCBI nr
Match: XP_008454474.1 (PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044676.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa] >TYK16906.1 zinc finger CCCH domain-containing protein 54 [Cucumis melo var. makuwa])

HSP 1 Score: 296.2 bits (757), Expect = 2.0e-76
Identity = 137/192 (71.35%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 2   EQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVAC 61
           E+V+D  AVF +DEFRM++YKIQRCPR RSHDWTECPYAHRGEKAQRRD RRFNY+AVAC
Sbjct: 32  EKVDD-TAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVAC 91

Query: 62  PAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETK 121
           PAFR+G+CP+GDFCE+AHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+PE+LR ETK
Sbjct: 92  PAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETK 151

Query: 122 QKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDSD 181
            KF+ NA R RV V AVE+P E KND +  I     G        RKN+R+FG++VS+ +
Sbjct: 152 HKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENG------GGRKNERSFGFDVSELE 211

Query: 182 LPHIGWIRELLQ 194
           LPHI WI ELL+
Sbjct: 212 LPHIEWISELLK 216

[Close]

BLAST of Moc10g02780 vs. NCBI nr
Match: KGN53171.2 (hypothetical protein Csa_015342 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-75
Identity = 133/188 (70.74%), Postives = 156/188 (82.98%), Query Frame = 0


Query: 6   DAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFR 65
           D  AVF SDEFRM++YKIQRCPR RSHDWTECPYAHRGEKAQRRD R+FNY+AVACPAFR
Sbjct: 78  DDTAVFSSDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRQFNYTAVACPAFR 137

Query: 66  NGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFH 125
           +G+CP+GDFCE+AHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+PE+LR ETKQK  
Sbjct: 138 SGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETKQKSS 197

Query: 126 FNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDSDLPHI 185
           F+AH+ RV V A+E+P E KND +  I   + G        RKN+R+FG +V++ +LPHI
Sbjct: 198 FSAHQQRVAVDAIESPPEEKNDGILEIPARVSG------SGRKNERSFGLDVTELELPHI 257

Query: 186 GWIRELLQ 194
            WI ELL+
Sbjct: 258 EWISELLK 259

[Close]

BLAST of Moc10g02780 vs. ExPASy Swiss-Prot
Match: O65036 (Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=TZF6 PE=1 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.8e-57
Identity = 114/201 (56.72%), Postives = 129/201 (64.18%), Query Frame = 0


Query: 9   AVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGN 68
           A++GSDEFRM+AYKI+RCPRTRSHDWTECPYAHRGEKA RRD RR+ Y AVACPAFRNG 
Sbjct: 46  AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRNGA 105

Query: 69  CPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR-SETKQKFHFN 128
           C RGD CE+AHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH PEQLR SE K +  + 
Sbjct: 106 CHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCRYA 165

Query: 129 AHRTRV----------------PVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDR 188
               R                       +P+ S  DD+ +  N  K L     R    D 
Sbjct: 166 YRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDS--NEEKVLLKCWSRMSIVDD 225

Query: 189 NFGWEVSDSDLPHIGWIRELL 193
           ++     D DL H  WI EL+
Sbjct: 226 HYEPSDLDLDLSHFDWISELV 244

[Close]

BLAST of Moc10g02780 vs. ExPASy Swiss-Prot
Match: Q9FU27 (Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0192000 PE=2 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.2e-44
Identity = 77/122 (63.11%), Postives = 95/122 (77.87%), Query Frame = 0


Query: 2   EQVEDAAAV------FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFN 61
           ++ E+AAA+      +  DEFRM+ +K++RC R RSHDWTECP+AH GEKA+RRD R+++
Sbjct: 57  DEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRKYH 116

Query: 62  YSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQ 118
           YS  ACP FR G C RGD CEYAHGVFE WLHPARYRT+ C  G  C+R+VCFFAHTP+Q
Sbjct: 117 YSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQ 176

[Close]

BLAST of Moc10g02780 vs. ExPASy Swiss-Prot
Match: Q6L4N4 (Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0195200 PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.2e-44
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 0


Query: 2   EQVEDAAAV------FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFN 61
           E  E+AAAV      +  DEFRM+ +K++RC R RSHDWTECP+AH GEKA+RRD RR+ 
Sbjct: 58  EDEEEAAAVAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPFAHPGEKARRRDPRRYC 117

Query: 62  YSAVACPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQ 118
           YS  ACP FR G C RGD CE+AHGVFE WLHPARYRT+ C  G  C+R+VCFFAHTP+Q
Sbjct: 118 YSGTACPDFRKGGCKRGDACEFAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQ 177

[Close]

BLAST of Moc10g02780 vs. ExPASy Swiss-Prot
Match: O82307 (Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN=At2g25900 PE=2 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.2e-42
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 11  FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCP 70
           F SDEFR++ +KI+RC R RSHDWTECP+AH GEKA+RRD R+F+YS  ACP FR G+C 
Sbjct: 86  FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCR 145

Query: 71  RGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 118
           RGD CE++HGVFE WLHP+RYRT+ C  G  C+R++CFFAHT EQLR
Sbjct: 146 RGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of Moc10g02780 vs. ExPASy Swiss-Prot
Match: Q9ZWA1 (Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=TZF4 PE=1 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.4e-42
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 6   DAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAF- 65
           D+   + SD FRMF +KI+RC R+RSHDWT+CP+AH GEKA+RRD RRF YS   CP F 
Sbjct: 73  DSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFR 132

Query: 66  RNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 118
           R G+C RGD CE+AHGVFE WLHP RYRT AC  G+ C+RKVCFFAH+P QLR
Sbjct: 133 RGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLR 185

[Close]

BLAST of Moc10g02780 vs. ExPASy TrEMBL
Match: A0A6J1CHL2 (zinc finger CCCH domain-containing protein 54 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111011570 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 1.7e-113
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 60
           MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA
Sbjct: 1   MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 60

Query: 61  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 120
           CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET
Sbjct: 61  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 120

Query: 121 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 180
           KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS
Sbjct: 121 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 180

Query: 181 DLPHIGWIRELLQ 194
           DLPHIGWIRELLQ
Sbjct: 181 DLPHIGWIRELLQ 193

[Close]

BLAST of Moc10g02780 vs. ExPASy TrEMBL
Match: A0A6J1CJI1 (zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111011570 PE=4 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 1.7e-113
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0


Query: 1   MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 60
           MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA
Sbjct: 26  MEQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVA 85

Query: 61  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 120
           CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET
Sbjct: 86  CPAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSET 145

Query: 121 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 180
           KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS
Sbjct: 146 KQKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDS 205

Query: 181 DLPHIGWIRELLQ 194
           DLPHIGWIRELLQ
Sbjct: 206 DLPHIGWIRELLQ 218

[Close]

BLAST of Moc10g02780 vs. ExPASy TrEMBL
Match: A0A5A7TRB5 (Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00410 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.9e-77
Identity = 137/192 (71.35%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 2   EQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVAC 61
           E+V+D  AVF +DEFRM++YKIQRCPR RSHDWTECPYAHRGEKAQRRD RRFNY+AVAC
Sbjct: 32  EKVDD-TAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVAC 91

Query: 62  PAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETK 121
           PAFR+G+CP+GDFCE+AHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+PE+LR ETK
Sbjct: 92  PAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETK 151

Query: 122 QKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDSD 181
            KF+ NA R RV V AVE+P E KND +  I     G        RKN+R+FG++VS+ +
Sbjct: 152 HKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENG------GGRKNERSFGFDVSELE 211

Query: 182 LPHIGWIRELLQ 194
           LPHI WI ELL+
Sbjct: 212 LPHIEWISELLK 216

[Close]

BLAST of Moc10g02780 vs. ExPASy TrEMBL
Match: A0A1S3BYP8 (zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC103494870 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 9.9e-77
Identity = 137/192 (71.35%), Postives = 159/192 (82.81%), Query Frame = 0


Query: 2   EQVEDAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVAC 61
           E+V+D  AVF +DEFRM++YKIQRCPR RSHDWTECPYAHRGEKAQRRD RRFNY+AVAC
Sbjct: 32  EKVDD-TAVFSTDEFRMYSYKIQRCPRNRSHDWTECPYAHRGEKAQRRDPRRFNYTAVAC 91

Query: 62  PAFRNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETK 121
           PAFR+G+CP+GDFCE+AHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAH+PE+LR ETK
Sbjct: 92  PAFRSGSCPKGDFCEFAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHSPEELRPETK 151

Query: 122 QKFHFNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDRNFGWEVSDSD 181
            KF+ NA R RV V AVE+P E KND +  I     G        RKN+R+FG++VS+ +
Sbjct: 152 HKFNLNAQRQRVAVAAVESPPEEKNDGILEIPARENG------GGRKNERSFGFDVSELE 211

Query: 182 LPHIGWIRELLQ 194
           LPHI WI ELL+
Sbjct: 212 LPHIEWISELLK 216

[Close]

BLAST of Moc10g02780 vs. ExPASy TrEMBL
Match: A0A6J1E9W0 (zinc finger CCCH domain-containing protein 54 OS=Cucurbita moschata OX=3662 GN=LOC111430684 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 7.3e-72
Identity = 130/189 (68.78%), Postives = 151/189 (79.89%), Query Frame = 0


Query: 6   DAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFR 65
           D  A+F SDEFRM+A+KIQRCP++RSHDWTECPYAHRGEKAQRRD RRFNYSAVACPAFR
Sbjct: 37  DDTALFNSDEFRMYAFKIQRCPKSRSHDWTECPYAHRGEKAQRRDPRRFNYSAVACPAFR 96

Query: 66  NGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLRSETKQKFH 125
            G+CP+GDFCE+AHGVFE+WLHP RYRTRACNAGRFCQRKVCFFAH+PE+LR ETK K H
Sbjct: 97  TGSCPKGDFCEFAHGVFEFWLHPTRYRTRACNAGRFCQRKVCFFAHSPEELRPETKLKLH 156

Query: 126 FNAHRTRVPVVAVEAPLESKNDDVSNIVNGLKGLTVREIRE-RKNDRNFGWEVSDSDLPH 185
           F+A   R  + A+E P+E KND VS I        V+EI +   N+R+   E S+ +LPH
Sbjct: 157 FDAPVARAALAALEYPVERKNDGVSEI-------PVKEISDGLGNERSSELEASEFELPH 216

Query: 186 IGWIRELLQ 194
           I WI ELLQ
Sbjct: 217 IEWISELLQ 218

[Close]

BLAST of Moc10g02780 vs. TAIR 10
Match: AT5G07500.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 222.6 bits (566), Expect = 2.7e-58
Identity = 114/201 (56.72%), Postives = 129/201 (64.18%), Query Frame = 0


Query: 9   AVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGN 68
           A++GSDEFRM+AYKI+RCPRTRSHDWTECPYAHRGEKA RRD RR+ Y AVACPAFRNG 
Sbjct: 46  AIYGSDEFRMYAYKIKRCPRTRSHDWTECPYAHRGEKATRRDPRRYTYCAVACPAFRNGA 105

Query: 69  CPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR-SETKQKFHFN 128
           C RGD CE+AHGVFEYWLHPARYRTRACNAG  CQRKVCFFAH PEQLR SE K +  + 
Sbjct: 106 CHRGDSCEFAHGVFEYWLHPARYRTRACNAGNLCQRKVCFFAHAPEQLRQSEGKHRCRYA 165

Query: 129 AHRTRV----------------PVVAVEAPLESKNDDVSNIVNGLKGLTVREIRERKNDR 188
               R                       +P+ S  DD+ +  N  K L     R    D 
Sbjct: 166 YRPVRARGGGNGDGVTMRMDDEGYDTSRSPVRSGKDDLDS--NEEKVLLKCWSRMSIVDD 225

Query: 189 NFGWEVSDSDLPHIGWIRELL 193
           ++     D DL H  WI EL+
Sbjct: 226 HYEPSDLDLDLSHFDWISELV 244

[Close]

BLAST of Moc10g02780 vs. TAIR 10
Match: AT2G25900.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 174.5 bits (441), Expect = 8.4e-44
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 11  FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCP 70
           F SDEFR++ +KI+RC R RSHDWTECP+AH GEKA+RRD R+F+YS  ACP FR G+C 
Sbjct: 86  FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCR 145

Query: 71  RGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 118
           RGD CE++HGVFE WLHP+RYRT+ C  G  C+R++CFFAHT EQLR
Sbjct: 146 RGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of Moc10g02780 vs. TAIR 10
Match: AT2G25900.2 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 174.5 bits (441), Expect = 8.4e-44
Identity = 72/107 (67.29%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 11  FGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGNCP 70
           F SDEFR++ +KI+RC R RSHDWTECP+AH GEKA+RRD R+F+YS  ACP FR G+C 
Sbjct: 86  FSSDEFRIYEFKIRRCARGRSHDWTECPFAHPGEKARRRDPRKFHYSGTACPEFRKGSCR 145

Query: 71  RGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 118
           RGD CE++HGVFE WLHP+RYRT+ C  G  C+R++CFFAHT EQLR
Sbjct: 146 RGDSCEFSHGVFECWLHPSRYRTQPCKDGTSCRRRICFFAHTTEQLR 192

[Close]

BLAST of Moc10g02780 vs. TAIR 10
Match: AT1G03790.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein )

HSP 1 Score: 172.9 bits (437), Expect = 2.4e-43
Identity = 75/113 (66.37%), Postives = 88/113 (77.88%), Query Frame = 0


Query: 6   DAAAVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAF- 65
           D+   + SD FRMF +KI+RC R+RSHDWT+CP+AH GEKA+RRD RRF YS   CP F 
Sbjct: 73  DSDDPYASDHFRMFEFKIRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFQYSGEVCPEFR 132

Query: 66  RNGNCPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 118
           R G+C RGD CE+AHGVFE WLHP RYRT AC  G+ C+RKVCFFAH+P QLR
Sbjct: 133 RGGDCSRGDDCEFAHGVFECWLHPIRYRTEACKDGKHCKRKVCFFAHSPRQLR 185

[Close]

BLAST of Moc10g02780 vs. TAIR 10
Match: AT2G41900.1 (CCCH-type zinc finger protein with ARM repeat domain )

HSP 1 Score: 171.4 bits (433), Expect = 7.1e-43
Identity = 70/109 (64.22%), Postives = 86/109 (78.90%), Query Frame = 0


Query: 9   AVFGSDEFRMFAYKIQRCPRTRSHDWTECPYAHRGEKAQRRDLRRFNYSAVACPAFRNGN 68
           +++ +DEFRM+++K++ C R  SHDWTECP+ H GE A+RRD R+F+YS V CP FR G 
Sbjct: 255 SIYATDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGA 314

Query: 69  CPRGDFCEYAHGVFEYWLHPARYRTRACNAGRFCQRKVCFFAHTPEQLR 118
           C RGD CEYAHGVFE WLHPA+YRTR C  G  C R+VCFFAHTPE+LR
Sbjct: 315 CRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTGCARRVCFFAHTPEELR 363

The following BLAST results are available for this feature:

BLAST of Moc10g02780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141094.1	3.6e-113	100.00	zinc finger CCCH domain-containing protein 54 isoform X2 [Momordica charantia]	[more]
XP_022141093.1	3.6e-113	100.00	zinc finger CCCH domain-containing protein 54 isoform X1 [Momordica charantia]	[more]
XP_038878131.1	2.4e-77	73.54	zinc finger CCCH domain-containing protein 54 [Benincasa hispida]	[more]
XP_008454474.1	2.0e-76	71.35	PREDICTED: zinc finger CCCH domain-containing protein 54 [Cucumis melo] >KAA0044...	[more]
KGN53171.2	1.3e-75	70.74	hypothetical protein Csa_015342 [Cucumis sativus]	[more]

BLAST of Moc10g02780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65036	3.8e-57	56.72	Zinc finger CCCH domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9FU27	6.2e-44	63.11	Zinc finger CCCH domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=...	[more]
Q6L4N4	8.2e-44	64.75	Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica OX...	[more]
O82307	1.2e-42	67.29	Zinc finger CCCH domain-containing protein 23 OS=Arabidopsis thaliana OX=3702 GN...	[more]
Q9ZWA1	3.4e-42	66.37	Zinc finger CCCH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of Moc10g02780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CHL2	1.7e-113	100.00	zinc finger CCCH domain-containing protein 54 isoform X2 OS=Momordica charantia ...	[more]
A0A6J1CJI1	1.7e-113	100.00	zinc finger CCCH domain-containing protein 54 isoform X1 OS=Momordica charantia ...	[more]
A0A5A7TRB5	9.9e-77	71.35	Zinc finger CCCH domain-containing protein 54 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3BYP8	9.9e-77	71.35	zinc finger CCCH domain-containing protein 54 OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A6J1E9W0	7.3e-72	68.78	zinc finger CCCH domain-containing protein 54 OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Moc10g02780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G07500.1	2.7e-58	56.72	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.1	8.4e-44	67.29	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G25900.2	8.4e-44	67.29	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT1G03790.1	2.4e-43	66.37	Zinc finger C-x8-C-x5-C-x3-H type family protein	[more]
AT2G41900.1	7.1e-43	64.22	CCCH-type zinc finger protein with ARM repeat domain	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000571	Zinc finger, CCCH-type	SMART	SM00356	c3hfinal6	coord: 55..81 e-value: 1.6E-7 score: 41.0 coord: 90..113 e-value: 19.0 score: 6.1
IPR000571	Zinc finger, CCCH-type	PFAM	PF00642	zf-CCCH	coord: 59..80 e-value: 6.0E-6 score: 26.0
IPR000571	Zinc finger, CCCH-type	PROSITE	PS50103	ZF_C3H1	coord: 55..82 score: 13.97624
None	No IPR available	GENE3D	4.10.1000.10		coord: 52..128 e-value: 4.5E-8 score: 34.8
None	No IPR available	PANTHER	PTHR14493:SF109	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 54	coord: 7..192
None	No IPR available	PANTHER	PTHR14493	UNKEMPT FAMILY MEMBER	coord: 7..192
IPR036855	Zinc finger, CCCH-type superfamily	SUPERFAMILY	90229	CCCH zinc finger	coord: 54..85

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc10g02780.1	Moc10g02780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009910	negative regulation of flower development
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0006349	regulation of gene expression by genetic imprinting
cellular_component	GO:0005634	nucleus
molecular_function	GO:0031490	chromatin DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0000976	transcription cis-regulatory region binding