Moc10g02480 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc10g02480
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr10: 1637111 .. 1641762 (+)
RNA-Seq ExpressionMoc10g02480
SyntenyMoc10g02480
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAGAGAGTTTCAGTGATCTGGGCTGTGGGGTTTCTCTTTATTATGCTCTTAATGGCTTCTAATGTTGCTGCTAGGAAATTTCCTGATACTCATATCCCTCTTGGGGATGGCTTGAACGTTCAATTTGATGCATCTCCTTTGCTATGTGAGTCTTTATAACCCCTCTCTCATATGTTTAACTTATGAATTACATATAAGTTTTTGGATTGTGTAAAAAAAAATATTATAGATACTTAGTCTGTGTAATCTATGGTTTTTGAGTTTATAATTTGTAAAAGTTAGTATACAATAAATTAAAACAAGTGTTTCAGGTTTGAACTTATTTAACATGAATTTATAGCTTGTGGGATTAGCATATCCATAGCTCCTGATAGAAGACTTATAAATCAAATATAAAACTGTTGGTTTTTTTTCTTGCACTCTTTGAAATCTCTGATTAATTTACTGTGTTTTGTTTTTCAGACAAATTTGAAGTGGAGATGGAAAAGACATATCAGGATTTTCTAAGATCGCACATTAGTAATGATGATCCTCGAGGTGGAAACTACTAAATGGAGCCATAAATTTTGTTATGCAGCAGTAATTTAGTTTGATGAACTCTATATGCAAATGCTCTACTTTAATTTTGTTATGTAAAAGTCGAAGCAGATGAATGAAAGAAGTTATTCTACTTTCTTACAATGAAAGACGTATTATTCTTCTTCTTAAGATAAAGAGATAGATATACATATTAGCTACTCTTTTTATTGGTCGTAATTGATTTTGAGATAAAAATTTATGAATATTAATAGAGTATTAGAATCCAATAAACTCAAACGAACATTTAGTCCAAAAATAGAATTCGACAAAAATTAATAAGCCCAAAAGAGCTGCCACCATCTTAAAAGAGAAAGATAAAAGATACTTTTAAGCACATGAAAAAGAGATTTAAGGAACAAATTGGATAATCAAAGGTTGCCCCTCTCTCAAAGAGTAGAAAAGCATGGTACAATCGTTTTTGCTCTATCCTTTATTTATTTGACTCCAGAGAAACAACCGATCATTTTTCAAAAAAAAAAATATATATATATAAACTTGCAGCTCTTCTCTGAGATGAATAAAAATGATTGTTTCTTCTTGGTCATCTAAATCAAAGTTCTTTTATAATTATGACATCTGCACCATCTATTGAAATTGAAGTACTTTGGTTTTGCTTCTTTTTGTTGTATGTTTCTTACCGACCTTTTGAATAAATGATATTTTTCTTTCAAAAAAAAATAATTATAAATAAAAACCCATTTTTGTAACTCATTTTCATTATCATTTTGGGACGGTTGCGAAAAACTATAATTGAGAGTTGAGAGACCAACAAAATAACTGCCCATTAATTTTTCAACTCAATTAAAACATCTTCCATTAAATATATATATTGTACATGTGTTCTCCTTAATTATGGTATATTAATTTTGTCAGATGTGAAAAATATTTTAATTAATCAAATAACTAACTTAATTATTAACACCTTTTTGTTCGGTATGTCTGTCTTTAGCCCTATTATCATTCTTTATTGTAAAAAGAATAGAATATTAAAAAGTAGACGTTAGTTGAAAAATCCATGTGCAATTAAATTCACAGTTCTTTTTTTTTTTTTGACTTACGCAGTTCTTTTGTTTAATTGAAGGGTTTCATAATTAAAAAATGTTATGTCGTCACTCTATTCCTTAAAAAAGTGTAATGTCACTTCAGCTTCATTTTCCCCACTTTTTTTTTAATATGGTAACAATGACATTTTAGCTGACCAATATATTTTCATTAAGAAATATATAACTTGGGTTAAAACAATTTTACTCTTTGTAATAGTATAGTTTAATTAATTACTAACTAGCTTGTTAACTATTAAATCTATTCTAATCACTGAAACGATAATCCCATGCTTTGTAGCTTGTAAGGTGACAAAAGAAATTAAACTCCACAAATTAAGATTAAGGGGTGAGACAAATTCTCGAAGAGCAGAAGAAACTTTTGCAAGTATATGGAATTTATCCAGGCATTTGATGCCTCTAATGAATGTCTCTAATGAATCATCTAGCTTACTTGTTTTTTTTGGTTTTATAATTTCCTATAATTGATGTCATGTAGTTTACGTTAATGGATCTCTGTAACTAGAGTTCGTGGTTTAAAATACTGAACAACACTTTAATTAGCGTAGTGCTCGAACGACACAAGACCTCAGGTGATACTAAATGACATAAATTTAAATTTGAAGATTTCTTTTTAAAGAGTAATTATATTGCAAAGGTAAGAAGAAGAATTTAAAAATGGATGAGGACGATAATTGACCATTTGAGTTAAAGCTCAAGTTGGTAATTAACAAATCTAAAGACATGTACTAAAATTATTCTGAGTTGAAGCATCAACCATACGTGAGTGTCTATGTCACTTTTTAAAATAGAAAAAAATAAAAGTAAAAATAATTTAACTCCAAAATATACACCAAACAATTAACTAAGACATGACTACACGTCGACCGACTAAACTATGAGTTTAAATAAATTGAATTATTGTTAAGACTTTTTCAAAAACTATCCAACACCGGAGGTGAGAATTCAAAATTTTGTATCCAAAACTATTCAAGGTCGTGAGCAAGTTTTAATGAAGATATATATATATATATATCTTTAACTAATTGGTAGGGAAAATAGGAGGGAAATTATTTGGAGTAATGCAATAAGTGCTATTCTTTAGAACGTTTGGTTGGAGTGAAACAACCGTATATTTTCCGATGTCTCTAGACCTTGTGCTCATCTTTGGAACGATTTTTTTATCGTAGTCTCCTCATGGTCTTCCAAATCTCCTCTCTTTTGTAATTATGCTCTTTCTACCACTTCTCTCAAAGTGTTTTTATATAGTCTCTTCTTTTGTATTTTACTCACATATCTATTTAATGAAATGGAAAAACTAATGGATGTTGAGGGACGTAAATCTAAAAGAAACATTCATAAACCGATCAACTTGATTTAAAAGATGTTAATGATCAATAATCAATAATTAGCATTCAATTTTGTCATGGCTCTGTCTGGGTTGTCAAATTGCGTGGCTACCCCTAGAGGACAACCAACGACCACATAGCAGCTTTTACTCGGAAATTATAATGTTATTTCAAACTAAACTAAATCAAATGTTTTGAATAACCAAATCAATATTGTCTTTCACCACTTGTCTCTTGTCGTAATATTGGAGATAACATTATAAAAAAAAAAAAAAAAGTGGACTGGCATATATTCACACTTCAAAACACACCAAAATTACCAAGCCCCAAATTTATATTTGGAGAGAGTAAATAAGAAAACTCAAACTTAAGCCGTGGTGTTTATATATGAATACATAATTAAGGAACTTGACATTGTATTAATCATCTTTGTTACAAATCTTAATTAAGTTTTTGTATGTCCCTAGCTCTAAAATGGCTTCCAAGAGAGTTTCAGTGATGTGGGGTGTGGGTTTTCTCTTTGTTATGCTTTTAATGGCTTCTAATGTTTCTGCAACGAAATTTCTTGTTGCTAATATCCTTCTTGGGGATGGCTTCCACCTTCAAACTAAGCCATCTTCATTCCTCTGTGAGTCTAATATGTTTTGGCTTATGATTTAAATTTTAAGTTTTCTAATTATATAGATCCTAGGAGTTTTTATAACCTATGTGCATCTTGTATTTTTTTTTCCTGGATAATTTATCTATGTATGAAGATTTGTAGAAATTAGTTTTTAATATAAAAGTAGAGTTTAAAAAAAAATCTACGTTTCTATATATAGTATGAATTTATGAAACCAGAAAAAAATAGTATGAATTTATGTATTTGTAGTTCATGGGATTAGCAAACTTGTGAATTTTGAGATAAATAAAACTAGCATACTCAAGATATATATATCGATATTTTTTAACCTTTGGTTACAAAAACCTAGCTTATGAATGAGCCAAATGGATTTTTTCTCTGAAAATAAAAAGTTGTGGAAAATACTTAGCTCTTTACCAATAAGAACTAAATCTTGTCTTTACCATCGTTAAAAATCAACAACTCATTATTTTTTAAAAGGAATATATATATATATATATATATATTTTGCATTTATCTCTAAGTTATCAAACATTAATTATTTAATAGTGGTGAGGACAAAATTTGATCCTCACAATTAAGTATTTCCTACCATTGTAATTGAGCAGCTCTAAAAGATTAGAAAAAAAAAATGTTTGAATTAAAGCTATTACAGAACACACCCTCCTTCCTTTCCTATCCCTATAATAAGAATGAATTTTGGTTTTGAATTATACCTAAAAGATCTTTTATATATATGAAAACATGTCAACTCTTTTACTAGTAAATCTAAGATTACTTACGTGATTCTTAGGAAAAATATTAAAAATTGTGTAAAAACATTGGTTTAATTTTCGTATGTTCATTTCTACACAACAAAACCTCGAACCAAAGATTAAAAATTTAAATGTGATAGGTTGTTTTTGCAATACTCTTGGAAATCTCTAACCATTTACTCTTATTTTGTTTGCAGATAAATTGAAAACGGAGATGGAGAAGAGATATGAGGATTTTTTAAGCTCCCAAATTAGTAACGATATTCCTCGAGGTGGAAACTACGAAATGGAGACATAA

mRNA sequence

ATGGCTTCCAAGAGAGTTTCAGTGATCTGGGCTGTGGGGTTTCTCTTTATTATGCTCTTAATGGCTTCTAATGTTGCTGCTAGGAAATTTCCTGATACTCATATCCCTCTTGGGGATGGCTTGAACGTTCAATTTGATGCATCTCCTTTGCTATACAAATTTGAAGTGGAGATGGAAAAGACATATCAGGATTTTCTAAGATCGCACATTAGTAATGATGATCCTCGAGATAAATTGAAAACGGAGATGGAGAAGAGATATGAGGATTTTTTAAGCTCCCAAATTAGTAACGATATTCCTCGAGGTGGAAACTACGAAATGGAGACATAA

Coding sequence (CDS)

ATGGCTTCCAAGAGAGTTTCAGTGATCTGGGCTGTGGGGTTTCTCTTTATTATGCTCTTAATGGCTTCTAATGTTGCTGCTAGGAAATTTCCTGATACTCATATCCCTCTTGGGGATGGCTTGAACGTTCAATTTGATGCATCTCCTTTGCTATACAAATTTGAAGTGGAGATGGAAAAGACATATCAGGATTTTCTAAGATCGCACATTAGTAATGATGATCCTCGAGATAAATTGAAAACGGAGATGGAGAAGAGATATGAGGATTTTTTAAGCTCCCAAATTAGTAACGATATTCCTCGAGGTGGAAACTACGAAATGGAGACATAA

Protein sequence

MASKRVSVIWAVGFLFIMLLMASNVAARKFPDTHIPLGDGLNVQFDASPLLYKFEVEMEKTYQDFLRSHISNDDPRDKLKTEMEKRYEDFLSSQISNDIPRGGNYEMET
Homology
[Close]
BLAST of Moc10g02480 vs. NCBI nr
Match: KAG6600181.1 (hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.0e-11
Identity = 39/76 (51.32%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 1  MASKRVSVIWAVGFLFIMLLMASNVAARKFPDTHIPLGDGLNVQFDASPLLYKFEVEMEK 60
          MAS  VSV W   F   MLLMASNV++RK  D +IP+ DG NV+  AS   Y+ E E+EK
Sbjct: 1  MASTNVSVSWRAVFFIAMLLMASNVSSRKLLDANIPVEDGFNVEIGASSFFYELEGELEK 60

Query: 61 TYQDFLRSHISNDDPR 77
           ++ F++SH  ND PR
Sbjct: 61 RFESFIKSHTDNDVPR 76

[Close]
BLAST of Moc10g02480 vs. NCBI nr
Match: KGN53134.1 (hypothetical protein Csa_015383 [Cucumis sativus])

HSP 1 Score: 78.2 bits (191), Expect = 4.9e-11
Identity = 48/109 (44.04%), Postives = 60/109 (55.05%), Query Frame = 0 

Query: 1   MASKRVSVIWAVGFLFIMLLMAS----NVAARKFPDTHIPLGDGLNVQFDASPLLYKFEV 60
           MASKRVS+I  V F  IMLL++S    NV+ARKF D + PL D  N+Q DAS L Y    
Sbjct: 1   MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFY---- 60

Query: 61  EMEKTYQDFLRSHISNDDPRDKLKTEMEKRYEDFLSSQISNDIPRGGNY 106
                                K+K E+++R+ED L +   NDIPRGGNY
Sbjct: 61  ---------------------KMKGELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of Moc10g02480 vs. NCBI nr
Match: KGN53135.1 (hypothetical protein Csa_014652 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-06
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 0 

Query: 1   MASKRVSVIWAVGFLFIMLLMAS----NVAARKFPDTHIP-LGDGLNVQFDASPLLYKFE 60
           MAS RVS+I  V F  IML ++S    N +ARKF D + P L D  ++Q  AS L Y   
Sbjct: 1   MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFY--- 60

Query: 61  VEMEKTYQDFLRSHISNDDPRDKLKTEMEKRYEDFLSSQISNDIPRGGNY 106
                                 KL+ E++KR+ED L +   NDIPRGGNY
Sbjct: 61  ----------------------KLEGELQKRFEDLLKTTTDNDIPRGGNY 85

[Close]
BLAST of Moc10g02480 vs. NCBI nr
Match: XP_031739611.1 (uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus])

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-04
Identity = 29/78 (37.18%), Postives = 38/78 (48.72%), Query Frame = 0 

Query: 28  RKFPDTHIPLGDGLNVQFDASPLLYKFEVEMEKTYQDFLRSHISNDDPRDKLKTEMEKRY 87
           +KF D + PL D  N+Q DAS L Y                         K+K E+++R+
Sbjct: 54  KKFLDVNTPLDDAFNLQMDASSLFY-------------------------KMKGELQRRF 106

Query: 88  EDFLSSQISNDIPRGGNY 106
           ED L +   NDIPRGGNY
Sbjct: 114 EDLLKATTDNDIPRGGNY 106

[Close]
BLAST of Moc10g02480 vs. ExPASy TrEMBL
Match: A0A0A0KW84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 48/109 (44.04%), Postives = 60/109 (55.05%), Query Frame = 0 

Query: 1   MASKRVSVIWAVGFLFIMLLMAS----NVAARKFPDTHIPLGDGLNVQFDASPLLYKFEV 60
           MASKRVS+I  V F  IMLL++S    NV+ARKF D + PL D  N+Q DAS L Y    
Sbjct: 1   MASKRVSMILNVVFFIIMLLISSNNNYNVSARKFLDVNTPLDDAFNLQMDASSLFY---- 60

Query: 61  EMEKTYQDFLRSHISNDDPRDKLKTEMEKRYEDFLSSQISNDIPRGGNY 106
                                K+K E+++R+ED L +   NDIPRGGNY
Sbjct: 61  ---------------------KMKGELQRRFEDLLKATTDNDIPRGGNY 84

[Close]
BLAST of Moc10g02480 vs. ExPASy TrEMBL
Match: A0A0A0KU24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 6.1e-07
Identity = 44/110 (40.00%), Postives = 56/110 (50.91%), Query Frame = 0 

Query: 1   MASKRVSVIWAVGFLFIMLLMAS----NVAARKFPDTHIP-LGDGLNVQFDASPLLYKFE 60
           MAS RVS+I  V F  IML ++S    N +ARKF D + P L D  ++Q  AS L Y   
Sbjct: 1   MASNRVSMILYVLFFIIMLSISSNNNYNASARKFLDVNFPLLDDAFDLQMGASSLFY--- 60

Query: 61  VEMEKTYQDFLRSHISNDDPRDKLKTEMEKRYEDFLSSQISNDIPRGGNY 106
                                 KL+ E++KR+ED L +   NDIPRGGNY
Sbjct: 61  ----------------------KLEGELQKRFEDLLKTTTDNDIPRGGNY 85

The following BLAST results are available for this feature:
BLAST of Moc10g02480 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6600181.11.0e-1151.32hypothetical protein SDJN03_05414, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN53134.14.9e-1144.04hypothetical protein Csa_015383 [Cucumis sativus][more]
KGN53135.11.3e-0640.00hypothetical protein Csa_014652 [Cucumis sativus][more]
XP_031739611.14.5e-0437.18uncharacterized protein LOC116403190 isoform X2 [Cucumis sativus][more]
BLAST of Moc10g02480 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc10g02480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KW842.4e-1144.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022210 PE=4 SV=1[more]
A0A0A0KU246.1e-0740.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G022220 PE=4 SV=1[more]
BLAST of Moc10g02480 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc10g02480.1Moc10g02480.1mRNA