Moc09g41270 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g41270
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	RNase H domain-containing protein
Location	chr9: 31428293 .. 31429830 (+)
RNA-Seq Expression	Moc09g41270
Synteny	Moc09g41270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGGAACTCACCATGGCTGACTTATAAAAGGAGCGAGCGGGCGTCTCTAGAAACTGGGAGCGGATATTGGAGACGAAGGAACTGGAACCTCAATTCTCGATTTCTCCAGAGCGACAGTAGAGAGAGACCTCCCAAAAAGGATTATTCTGAATTCCAAATGGTTTCTGGTTCTGGATTCGTCTCGAATGATATCGGGCTCGACCCATTGAATACTTATGGGCCAAGCCCGTTAGCTCAACTTATCCCAGGCCCAATAAGAATTCTTTCACATCGTCAGTCTGAACGATGCTCTTGGGCCTGTCCAAATGGCCCAGAATAGTGAGGGATTGTTTTTATTTTACCGGTTAAAGTATCATTTTATTCACGTTTGTAGCTTCGTTTCAATTTTATTATACACATCTTTTTAAAAGTTTCACCGTTAATACACTTTTTTTTCTCTCTCTGTGGCAGGGATTAAACTCTTTTCTTTCTATATACGAAAGTGAAAATTTAAACTCACAATATTTTAGTAGAACATATATGTTTTAATTAATTGGACTATATTCAAATTCGTACGTAGATATTGAATCCGAAAGTGGAAGGGGCCTAGCAAAATCCGTTTCTTTCTTTGGTTAGCGACTCACAATCGTCTTCTCACAAATGAGGAAAGGGTTCGTCGTCACCTTTCCGAGTCTGCTGTCTGCCCTCATTGCCCTGATTTAGTGGAGTCCTCGTTGCATATTCTCCGTGACTGCCCCTGTGCTCACGATTTGTGGCGTGGTCTGATCCCCTCGGGTCTCCCATCTTGTTTCTTTGCTGGTAACATTGCCTAGTGGATTCAATTTAATTTGTCGGTTCCTTTGGTTTCGCATTGGTCGTCTATTTATGCAACAGGGTGTTGGTTGCTTTGGAATTGGCGCAATAAATCTATCTTTCAACCACAATTCTCCTTTCGACCATGCCTGTCTTGATAGTTCATTGCACTGCCAGTAATTTTGTGAATTTATGGAACTGGGTTGTCCCTTTCCTTTCGAAGCCTTATCATTGTTGGTCTGCTGTTAGCTGGGAGGCCCCTCCGGCCAATTGTTGGAAGCTTAATACCTACTAGTGCAGGCGGCCTCATTCGAGATCTAAATGGGCAGGAGGGTAGTGGGTTTTATGCATAATCTAGGTCATGGTACGTCGTTTACAGCCGAATTGTGGGGTGTCTTTTTTGGGTTGAAGATTGTCTCGAATGCTGGTTGTAGGAATCTTCTTGTTGAGGTGGACTCTGAAATGGTGCGCAGTATCCTGTCTAAGGGATATCATTACTTGCCTTTGCTTCGTCCATTGGTGTCGAATATTAACCATCTTTTGTCGAGGGATTGGTTTGTCGACTTTTCGCACATCTATCGTGAAGCCAATTCTTGCACAGATTGGCTTGCTCGTCGGGCTTCTTCGACTACTGTGAGTTGTCATGTTTGTGAGCGACCATCGCCGGGTCTCTCTCCCTTGTTGATGGTTGATGTTATGGGGTCTCCATGCCCCGCCTTGTTCCTCTTTTTAGTTTCTTAG

mRNA sequence

ATGATGAGGAACTCACCATGGCTGACTTATAAAAGGAGCGAGCGGGCGTCTCTAGAAACTGGGAGCGGATATTGGAGACGAAGGAACTGGAACCTCAATTCTCGATTTCTCCAGAGCGACAGTAGAGAGAGACCTCCCAAAAAGGATTATTCTGAATTCCAAATGGTTTCTGGTTCTGGATTCGTCTCGAATGATATCGGGCTCGACCCATTGAATACTTATGGGCCAAGCCCGTTAGCTCAACTTATCCCAGGCCCAATAAGAATTCTTTCACATCGTCAGTCTGAACGATGCTCTTGGGCCTCGACTCACAATCGTCTTCTCACAAATGAGGAAAGGGTTCGTCGTCACCTTTCCGAGTCTGCTGTCTGCCCTCATTGCCCTGATTTAGTGGAGTCCTCGTTGCATATTCTCCGTGACTGCCCCTGTGCTCACGATTTGTGGCGTGGTCTGATCCCCTCGGGTCTCCCATCTTGTTTCTTTGCTGGTCATGGTACGTCGTTTACAGCCGAATTGTGGGGTGTCTTTTTTGGGTTGAAGATTGTCTCGAATGCTGGTTGTAGGAATCTTCTTGTTGAGGTGGACTCTGAAATGGTGCGCAGTATCCTGTCTAAGGGATATCATTACTTGCCTTTGCTTCGTCCATTGGTGTCGAATATTAACCATCTTTTGTCGAGGGATTGGTTTGTCGACTTTTCGCACATCTATCGTGAAGCCAATTCTTGCACAGATTGGCTTGCTCGTCGGGCTTCTTCGACTACTGTGAGTTGTCATGTTTGTGAGCGACCATCGCCGGGTCTCTCTCCCTTGTTGATGGTTGATGTTATGGGGTCTCCATGCCCCGCCTTGTTCCTCTTTTTAGTTTCTTAG

Coding sequence (CDS)

ATGATGAGGAACTCACCATGGCTGACTTATAAAAGGAGCGAGCGGGCGTCTCTAGAAACTGGGAGCGGATATTGGAGACGAAGGAACTGGAACCTCAATTCTCGATTTCTCCAGAGCGACAGTAGAGAGAGACCTCCCAAAAAGGATTATTCTGAATTCCAAATGGTTTCTGGTTCTGGATTCGTCTCGAATGATATCGGGCTCGACCCATTGAATACTTATGGGCCAAGCCCGTTAGCTCAACTTATCCCAGGCCCAATAAGAATTCTTTCACATCGTCAGTCTGAACGATGCTCTTGGGCCTCGACTCACAATCGTCTTCTCACAAATGAGGAAAGGGTTCGTCGTCACCTTTCCGAGTCTGCTGTCTGCCCTCATTGCCCTGATTTAGTGGAGTCCTCGTTGCATATTCTCCGTGACTGCCCCTGTGCTCACGATTTGTGGCGTGGTCTGATCCCCTCGGGTCTCCCATCTTGTTTCTTTGCTGGTCATGGTACGTCGTTTACAGCCGAATTGTGGGGTGTCTTTTTTGGGTTGAAGATTGTCTCGAATGCTGGTTGTAGGAATCTTCTTGTTGAGGTGGACTCTGAAATGGTGCGCAGTATCCTGTCTAAGGGATATCATTACTTGCCTTTGCTTCGTCCATTGGTGTCGAATATTAACCATCTTTTGTCGAGGGATTGGTTTGTCGACTTTTCGCACATCTATCGTGAAGCCAATTCTTGCACAGATTGGCTTGCTCGTCGGGCTTCTTCGACTACTGTGAGTTGTCATGTTTGTGAGCGACCATCGCCGGGTCTCTCTCCCTTGTTGATGGTTGATGTTATGGGGTCTCCATGCCCCGCCTTGTTCCTCTTTTTAGTTTCTTAG

Protein sequence

MMRNSPWLTYKRSERASLETGSGYWRRRNWNLNSRFLQSDSRERPPKKDYSEFQMVSGSGFVSNDIGLDPLNTYGPSPLAQLIPGPIRILSHRQSERCSWASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWRGLIPSGLPSCFFAGHGTSFTAELWGVFFGLKIVSNAGCRNLLVEVDSEMVRSILSKGYHYLPLLRPLVSNINHLLSRDWFVDFSHIYREANSCTDWLARRASSTTVSCHVCERPSPGLSPLLMVDVMGSPCPALFLFLVS

Homology

[Close]

BLAST of Moc09g41270 vs. NCBI nr
Match: XP_031376896.1 (uncharacterized protein LOC116192475 [Punica granatum])

HSP 1 Score: 112.5 bits (280), Expect = 6.3e-21
Identity = 78/307 (25.41%), Postives = 110/307 (35.83%), Query Frame = 0


Query: 100 WASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWRGLIPSGLPSC 159
           W   H +LLTN  RV RHL+ S +C  C    E+ LH+LRDCP     W  L+P  +   
Sbjct: 102 WLVAHEKLLTNSLRVSRHLAVSGLCDFCSSTAETILHVLRDCPGTRSAWYRLVPRNIRDR 161

Query: 160 FFA--------------------------------------------------------- 219
           FF+                                                         
Sbjct: 162 FFSEPLKPWLMLNLGSCDEKWSTLFGVACWLLWGWRNKGLFEQDFVRPRDEVRAIRATAH 221

Query: 220 ------------------------------------------------------------ 279
                                                                       
Sbjct: 222 NFEHARDLRSNTSQPRREWRWIQWRRPPPGWVKVNTDGASRGNPGIAGAGGLLRNDDGHW 281

Query: 280 --------GHGTSFTAELWGVFFGLKIVSNAGCRNLLVEVDSEMVRSILSKGYHYLPLLR 282
                   G  TS  AELWG   GL++  + G R++++E+DS++V+ +LS G  +   L 
Sbjct: 282 ICGFLHNVGFATSTIAELWGALVGLQLAWDRGYRHVVLELDSQVVQRLLSDGSTHNQCLE 341

[Close]

BLAST of Moc09g41270 vs. NCBI nr
Match: CAA7042576.1 (unnamed protein product [Microthlaspi erraticum])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-18
Identity = 78/255 (30.59%), Postives = 100/255 (39.22%), Query Frame = 0


Query: 100 WASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWRGLIP------ 159
           W   H  L+TN ER RRHLS S VC  C    E+ LH+LRDCP    +WR ++P      
Sbjct: 554 WLGVHQVLMTNSERQRRHLSTSGVCQVCRGGDETILHVLRDCPAMEGIWRRIVPVRKRDR 613

Query: 160 ------------------------------------------------------SGLPS- 219
                                                                 SGL S 
Sbjct: 614 VQFVKDQTREATAAHQSVNINSRTRATWIERLVHWVRPSAGWVKVNTDGASRGNSGLASA 673

Query: 220 ---------CFFAGHG------TSFTAELWGVFFGLKIVSNAGCRNLLVEVDSEMVRSIL 279
                    C+  G        T+  AELWGV++GL I  ++  + + +EVDSEMV   L
Sbjct: 674 GGVLRDELGCWCRGFALNIGICTAPLAELWGVYYGLCIAWDSKAQRVELEVDSEMVVGFL 733

[Close]

BLAST of Moc09g41270 vs. NCBI nr
Match: RYR73271.1 (hypothetical protein Ahy_A02g007623 [Arachis hypogaea])

HSP 1 Score: 103.2 bits (256), Expect = 3.8e-18
Identity = 70/220 (31.82%), Postives = 97/220 (44.09%), Query Frame = 0


Query: 100  WASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWR---------- 159
            W   HN LLTN ER RRH+S SA CP C    E  LH+LRDCP A  +W           
Sbjct: 933  WLVAHNVLLTNVERRRRHMSNSAQCPVCNAADEDILHVLRDCPFAKAVWNFFKAHDIITD 992

Query: 160  --------------------GLIPSGLPSC--------FFAGHGTSFTAELWGVFFGLKI 219
                                  I     SC         F G  +   AELWG+  GL I
Sbjct: 993  FFDMTIRDWLFANLSNETDWSCIFGVASSCLWFFRNKYIFEGSCSITQAELWGIVKGLHI 1052

Query: 220  VSNAGCRNLLVEVDSEMVRSILSKGYHYLPLLRPLVSNINHLLSRDWFVDFSHIYREANS 279
                   ++L+E DS M  + + +G       +PL+ +I+ L SR   V++ H  REAN+
Sbjct: 1053 TVANEFSHVLIESDSAMAINFIREGCTNSHPCKPLLDDISLLSSRIHKVEWKHTLREANT 1112

Query: 280  CTDWLARRASSTTVSCHVCERPSPGLSPLLMVDVMGSPCP 282
              D LA++     +  H+ + P P ++  L++D  GS  P
Sbjct: 1113 VADTLAKKGQHLPLGLHLFDTPPPDITNSLLLDSYGSLRP 1152

[Close]

BLAST of Moc09g41270 vs. NCBI nr
Match: KAF7815339.1 (reverse transcriptase [Senna tora])

HSP 1 Score: 98.2 bits (243), Expect = 1.2e-16
Identity = 59/197 (29.95%), Postives = 90/197 (45.69%), Query Frame = 0


Query: 100 WASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWR---GLIPSGL 159
           W+  H+ ++T+ +R+RR  ++S +C  C    +++LH +RDCPC   LWR   G +  G 
Sbjct: 18  WSLAHDSIMTDNQRMRRCFTDSDICKRCGQAAKTTLHAIRDCPCVSGLWRTRKGTL-DGT 77

Query: 160 PSC--------------------------------------FFAGH---GTSFTAELWGV 219
           PS                                        FA H   G     E+W +
Sbjct: 78  PSSKDFAQADKIRNMGLSNSSPSEVSTYDWLARNENGNWLFGFAKHLLKGCVDHVEIWSI 137

Query: 220 FFGLKIVSNAGCRNLLVEVDSEMVRSILSKGYHYLPLLRPLVSNINHLLSRDWFVDFSHI 253
           FFG+      G ++++VE D+  V +++  GY     LR ++S I  LL+RDW V   H+
Sbjct: 138 FFGIITGWEKGFKHVVVESDNRNVINLICNGYDGPHPLRNILSRIRELLNRDWHVKIKHV 197

[Close]

BLAST of Moc09g41270 vs. NCBI nr
Match: XP_031402735.1 (uncharacterized protein LOC116212324 [Punica granatum])

HSP 1 Score: 97.8 bits (242), Expect = 1.6e-16
Identity = 85/329 (25.84%), Postives = 119/329 (36.17%), Query Frame = 0


Query: 85   GPIRILSHRQSERCSWASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCA 144
            GP RI S        W + H+RLLTNE RV+R+L+ S++C  C   VE++LH+LRDC  +
Sbjct: 886  GPQRIRSF------LWLAGHDRLLTNEHRVKRNLASSSLCASCNIAVENTLHVLRDCSLS 945

Query: 145  HDLWRGLI---------------------------------------------------- 204
              +W+ LI                                                    
Sbjct: 946  CAVWKQLILRSMWQSFSSVPLNNWLVQNLSIKVKNQKGISWAVVFGVGCWLMWSWRNKSI 1005

Query: 205  ----------------------------------------------PS------------ 264
                                                          PS            
Sbjct: 1006 FDQTFSRPQDAHVSILRAAESFSVGWQDQVVVRRTVREWQLVGWNRPSRGWIKLNTDGAS 1065

Query: 265  -----------------GLPSCFFA---GHGTSFTAELWGVFFGLKIVSNAGCRNLLVEV 284
                             G+ +  FA   G  T+  AELWGV  GL++    G R +L+EV
Sbjct: 1066 KGNPGPAGAGGVLRKEDGVWTASFARNVGIATAVVAELWGVLSGLELAWELGYRLVLLEV 1125

[Close]

BLAST of Moc09g41270 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 5.5e-12
Identity = 49/145 (33.79%), Postives = 67/145 (46.21%), Query Frame = 0


Query: 137 ILRDCPCAHDLWRGLIPSGLPSCFFAGHGTSFTAELWGVFFGLKIVSNAGCRNLLVEVDS 196
           +LRDC  A   W G     +  C      ++  AELWGV++GL          + +EVDS
Sbjct: 480 VLRDCTGA---WCGGFSLNIGRC------SAPQAELWGVYYGLYFAWEKKVPRVELEVDS 539

Query: 197 EMVRSILSKGYHYLPLLRPLVSNINHLLSRDWFVDFSHIYREANSCTDWLARRASSTTVS 256
           E++   L  G      L  LV   +  L +DW V   H+YREAN   D LA  A S ++ 
Sbjct: 540 EVIVGFLKTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLG 599

Query: 257 CHVCERPSPGLSPLLMVDVMGSPCP 282
            H  +     +S LL  D +GS  P
Sbjct: 600 FHSFDLVPDAMSSLLREDTLGSTRP 615

HSP 2 Score: 59.7 bits (143), Expect = 6.3e-08
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 100 WASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWRGLIPSGLPSC 159
           W   +  ++T EER RRHLS S VC  C   VES LH+LRDCP    +W  ++P      
Sbjct: 305 WLVGNQAVMTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQG 364

Query: 160 FFA 163
           FF+
Sbjct: 365 FFS 367

[Close]

BLAST of Moc09g41270 vs. ExPASy TrEMBL
Match: A0A6P8C599 (uncharacterized protein LOC116192475 OS=Punica granatum OX=22663 GN=LOC116192475 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-21
Identity = 78/307 (25.41%), Postives = 110/307 (35.83%), Query Frame = 0


Query: 100 WASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWRGLIPSGLPSC 159
           W   H +LLTN  RV RHL+ S +C  C    E+ LH+LRDCP     W  L+P  +   
Sbjct: 102 WLVAHEKLLTNSLRVSRHLAVSGLCDFCSSTAETILHVLRDCPGTRSAWYRLVPRNIRDR 161

Query: 160 FFA--------------------------------------------------------- 219
           FF+                                                         
Sbjct: 162 FFSEPLKPWLMLNLGSCDEKWSTLFGVACWLLWGWRNKGLFEQDFVRPRDEVRAIRATAH 221

Query: 220 ------------------------------------------------------------ 279
                                                                       
Sbjct: 222 NFEHARDLRSNTSQPRREWRWIQWRRPPPGWVKVNTDGASRGNPGIAGAGGLLRNDDGHW 281

Query: 280 --------GHGTSFTAELWGVFFGLKIVSNAGCRNLLVEVDSEMVRSILSKGYHYLPLLR 282
                   G  TS  AELWG   GL++  + G R++++E+DS++V+ +LS G  +   L 
Sbjct: 282 ICGFLHNVGFATSTIAELWGALVGLQLAWDRGYRHVVLELDSQVVQRLLSDGSTHNQCLE 341

[Close]

BLAST of Moc09g41270 vs. ExPASy TrEMBL
Match: A0A6D2JTC3 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS29811 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.8e-19
Identity = 78/255 (30.59%), Postives = 100/255 (39.22%), Query Frame = 0


Query: 100 WASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWRGLIP------ 159
           W   H  L+TN ER RRHLS S VC  C    E+ LH+LRDCP    +WR ++P      
Sbjct: 554 WLGVHQVLMTNSERQRRHLSTSGVCQVCRGGDETILHVLRDCPAMEGIWRRIVPVRKRDR 613

Query: 160 ------------------------------------------------------SGLPS- 219
                                                                 SGL S 
Sbjct: 614 VQFVKDQTREATAAHQSVNINSRTRATWIERLVHWVRPSAGWVKVNTDGASRGNSGLASA 673

Query: 220 ---------CFFAGHG------TSFTAELWGVFFGLKIVSNAGCRNLLVEVDSEMVRSIL 279
                    C+  G        T+  AELWGV++GL I  ++  + + +EVDSEMV   L
Sbjct: 674 GGVLRDELGCWCRGFALNIGICTAPLAELWGVYYGLCIAWDSKAQRVELEVDSEMVVGFL 733

[Close]

BLAST of Moc09g41270 vs. ExPASy TrEMBL
Match: A0A445ECY0 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A02g007623 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 70/220 (31.82%), Postives = 97/220 (44.09%), Query Frame = 0


Query: 100  WASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWR---------- 159
            W   HN LLTN ER RRH+S SA CP C    E  LH+LRDCP A  +W           
Sbjct: 933  WLVAHNVLLTNVERRRRHMSNSAQCPVCNAADEDILHVLRDCPFAKAVWNFFKAHDIITD 992

Query: 160  --------------------GLIPSGLPSC--------FFAGHGTSFTAELWGVFFGLKI 219
                                  I     SC         F G  +   AELWG+  GL I
Sbjct: 993  FFDMTIRDWLFANLSNETDWSCIFGVASSCLWFFRNKYIFEGSCSITQAELWGIVKGLHI 1052

Query: 220  VSNAGCRNLLVEVDSEMVRSILSKGYHYLPLLRPLVSNINHLLSRDWFVDFSHIYREANS 279
                   ++L+E DS M  + + +G       +PL+ +I+ L SR   V++ H  REAN+
Sbjct: 1053 TVANEFSHVLIESDSAMAINFIREGCTNSHPCKPLLDDISLLSSRIHKVEWKHTLREANT 1112

Query: 280  CTDWLARRASSTTVSCHVCERPSPGLSPLLMVDVMGSPCP 282
              D LA++     +  H+ + P P ++  L++D  GS  P
Sbjct: 1113 VADTLAKKGQHLPLGLHLFDTPPPDITNSLLLDSYGSLRP 1152

[Close]

BLAST of Moc09g41270 vs. ExPASy TrEMBL
Match: A0A6P8E5K3 (uncharacterized protein LOC116212324 OS=Punica granatum OX=22663 GN=LOC116212324 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.7e-17
Identity = 85/329 (25.84%), Postives = 119/329 (36.17%), Query Frame = 0


Query: 85   GPIRILSHRQSERCSWASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCA 144
            GP RI S        W + H+RLLTNE RV+R+L+ S++C  C   VE++LH+LRDC  +
Sbjct: 886  GPQRIRSF------LWLAGHDRLLTNEHRVKRNLASSSLCASCNIAVENTLHVLRDCSLS 945

Query: 145  HDLWRGLI---------------------------------------------------- 204
              +W+ LI                                                    
Sbjct: 946  CAVWKQLILRSMWQSFSSVPLNNWLVQNLSIKVKNQKGISWAVVFGVGCWLMWSWRNKSI 1005

Query: 205  ----------------------------------------------PS------------ 264
                                                          PS            
Sbjct: 1006 FDQTFSRPQDAHVSILRAAESFSVGWQDQVVVRRTVREWQLVGWNRPSRGWIKLNTDGAS 1065

Query: 265  -----------------GLPSCFFA---GHGTSFTAELWGVFFGLKIVSNAGCRNLLVEV 284
                             G+ +  FA   G  T+  AELWGV  GL++    G R +L+EV
Sbjct: 1066 KGNPGPAGAGGVLRKEDGVWTASFARNVGIATAVVAELWGVLSGLELAWELGYRLVLLEV 1125

[Close]

BLAST of Moc09g41270 vs. ExPASy TrEMBL
Match: A0A2H5MVA9 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_272900 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-16
Identity = 67/204 (32.84%), Postives = 88/204 (43.14%), Query Frame = 0


Query: 100 WASTHNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWRGLIPSGLPSC 159
           W   H RL T +E  RRHL +S  C  C   VE  LH LRDC  A  +W  L+P+  P  
Sbjct: 143 WLLLHGRLKTKKELNRRHLIDSTQCDRCGGPVEDILHTLRDCVTAKRVWSHLLPNHHPHS 202

Query: 160 FF------------AGHGTSFTAELWGVFFGLKIVSNAGCRNLLVEVDSE-----MVRSI 219
           FF                 + + E W V FG+ +      RN  +          +   I
Sbjct: 203 FFLCPLSDWLQMNLMRKKNNTSQEYWRVCFGVAVWRLWFWRNNFLFNHGSWESGFIATDI 262

Query: 220 LSKGYHYLPLLRP-LVSNINHLLSRDWFVDFSHIYREANSCTDWLARRASSTTVSCHVCE 279
            ++    LP     LV  I  LL+RDW V   H+YREANS  D+LA  + +  +  HV  
Sbjct: 263 KARTKEILPNENAILVKTIRELLARDWIVHMEHVYREANSAADFLASYSLTKPLGLHVLP 322

Query: 280 RPSPGLSPLLMVDVMGSPCPALFL 286
            P P +  LL  D  G    +L L
Sbjct: 323 SPPPDIIGLLCNDAYGIAHSSLVL 346

[Close]

BLAST of Moc09g41270 vs. TAIR 10
Match: AT5G61090.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.6e-06
Identity = 30/106 (28.30%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 170 AELWGVFFGLKIVSNAGCRNLLVEVDS-EMVRSILSKGYHYLPLLRPLVSNINHLLSRDW 229
           A L  ++ GLK + ++G R + +E  S E++ ++ +K   +    + L+     ++ ++W
Sbjct: 548 AGLLAIYQGLKYLWDSGFRRIHLETTSFEIINALTTKSSLFCK-SKTLLGACKDMILKEW 607

Query: 230 FVDFSHIYREANSCTDWLARRASSTTVSCHVCERPSPGLSPLLMVD 275
             D  HI +E NSC +WLA+R+          E P  GL   L  D
Sbjct: 608 ECDIYHISKEQNSCAEWLAKRSEEQPQELVFFEYPPRGLMDFLEKD 652

[Close]

BLAST of Moc09g41270 vs. TAIR 10
Match: AT3G43940.1 (unknown protein; Has 24 Blast hits to 24 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-05
Identity = 19/40 (47.50%), Postives = 27/40 (67.50%), Query Frame = 0


Query: 103 THNRLLTNEERVRRHLSESAVCPHCPDLVESSLHILRDCP 143
           +H  ++TN ER RRH+ ES +C  C    E+ +H+LRDCP
Sbjct: 55  SHQVIMTNVERFRRHIRESEICQVCKAASETIIHLLRDCP 94

[Close]

BLAST of Moc09g41270 vs. TAIR 10
Match: AT5G42905.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 6.7e-05
Identity = 24/55 (43.64%), Postives = 30/55 (54.55%), Query Frame = 0


Query: 108 LTNEERVRRHLSESAVCPHCPDLVESSLHILRDCPCAHDLWRGLIPSGLPSCFFA 163
           +T+EER RRHLS S V       VES LH+ RDCP    +W   +P      FF+
Sbjct: 1   MTDEERHRRHLSASNVSQVYIGGVESVLHVFRDCPAQLGIWVRFVPRRRQQGFFS 55

The following BLAST results are available for this feature:

BLAST of Moc09g41270 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031376896.1	6.3e-21	25.41	uncharacterized protein LOC116192475 [Punica granatum]	[more]
CAA7042576.1	1.0e-18	30.59	unnamed protein product [Microthlaspi erraticum]	[more]
RYR73271.1	3.8e-18	31.82	hypothetical protein Ahy_A02g007623 [Arachis hypogaea]	[more]
KAF7815339.1	1.2e-16	29.95	reverse transcriptase [Senna tora]	[more]
XP_031402735.1	1.6e-16	25.84	uncharacterized protein LOC116212324 [Punica granatum]	[more]

BLAST of Moc09g41270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C2F6	5.5e-12	33.79	Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1...	[more]

BLAST of Moc09g41270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P8C599	3.0e-21	25.41	uncharacterized protein LOC116192475 OS=Punica granatum OX=22663 GN=LOC116192475...	[more]
A0A6D2JTC3	4.8e-19	30.59	Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS29811 ...	[more]
A0A445ECY0	1.8e-18	31.82	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_A02g007623 PE=4 SV=1	[more]
A0A6P8E5K3	7.7e-17	25.84	uncharacterized protein LOC116212324 OS=Punica granatum OX=22663 GN=LOC116212324...	[more]
A0A2H5MVA9	3.8e-16	32.84	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_272900 PE=4 SV=1	[more]

BLAST of Moc09g41270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61090.1	1.6e-06	28.30	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT3G43940.1	1.4e-05	47.50	unknown protein; Has 24 Blast hits to 24 proteins in 4 species: Archae - 0; Bact...	[more]
AT5G42905.1	6.7e-05	43.64	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 161..250 e-value: 1.0E-18 score: 67.4
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 153..252 score: 8.774375
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 152..257 e-value: 1.7E-12 score: 49.4
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 99..148 e-value: 2.1E-7 score: 31.6
None	No IPR available	PANTHER	PTHR47723:SF3	OS06G0683500 PROTEIN	coord: 163..253
None	No IPR available	PANTHER	PTHR47723	OS05G0353850 PROTEIN	coord: 163..253
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 163..248 e-value: 3.08685E-18 score: 76.9692
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 160..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g41270.1	Moc09g41270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity