Moc09g38120 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g38120
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr9: 29324251 .. 29325268 (+)
RNA-Seq Expression	Moc09g38120
Synteny	Moc09g38120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAAGTATGAGGGCCGAGGTGAACCTGGCCGAGGTCCGACCTACCGGGAAGCTCGGTGGGGGCCGATATGAACTACTGTCAGCGGCGTGATTATCGGGTGTAACCGTCGGTCCCGAGATTACCGGGTGTAACCGACGGCCCCGAGATTACCGGGTGAAACCGTCGCGAGAGTAGCGGGACTACCACCCATAAGTAGAGGGTCTCACTCCACGATCAGGTAGGATGATTTCTGACCTCGAACTAAATTGGGAATCCGACCTATACTGACTTGATCGTCGGAGTGCTCACCTTTTTGTGCAGGTCCGCCCAAGTATTCAGATCGGTCCGGAGGCCGAGTTCGAGCTGCAACCAGAAGTACACTGTTGTGCATATCCTTGCATAAACATTTGATATATATTAAATATTTGATTTATATAGCATTTTTTCTTAGGTAAAAATTTAAGTCCTATTTCCTTCCTATAATTCCTAACAAATCAAAATGAAAATCAAGAAGGGAAAGATGCACGTGAAATTTATTATTCTATTACTTTTATTTTGAGGGTAATTTTGTCATTTAAATACAAATGTCAGAACTTGCAGTCTCAAAATAAATGGTAATCATCTTCCTCTTTCCTGTTGCAAATTAAAGGAAAAAGAAAAAAGTTAGGAACATCAACTTAAAATCACAAAAGTCATAAACTAAACACAAATTTCTATAACTCGTTATGCAATGGAAACCGAAAGTCGAGGTACAGGTGAAGATCGGAAGGAAGCCACTGGGCTGCGATGGGCTCGGTCCCGACCCGTGGCACGGCCCACGGCCCTCCAGCGGCCCTTCGTCTTCAATCCACGGTTTCGCTCAGGCCCGCCAACGAAATTAGGGTTAGCTACCTATGAAATGTTCTGGAACAACCTGGCGACTATAAGTAGCGATCCAGCCTTAGAGGTAAGGACATCTAAAACTAGCTACATTTCACATTATCCTCCTGATAACTTAAGCATCGGAGCCCGTGTGACTAGAGTCGCACCGGTTTAG

mRNA sequence

ATGCTAAGTATGAGGGCCGAGGTGAACCTGGCCGAGGTCCGACCTACCGGGAAGCTCGGTCCGCCCAAGTATTCAGATCGGTCCGGAGGCCGAGTTCGAGCTGCAACCAGAAGTGAAGATCGGAAGGAAGCCACTGGGCTGCGATGGGCTCGGTCCCGACCCGTGGCACGGCCCACGGCCCTCCAGCGGCCCTTCGTCTTCAATCCACGGTTTCGCTCAGGCCCGCCAACGAAATTAGGGTTAGCTACCTATGAAATGTTCTGGAACAACCTGGCGACTATAAGTAGCGATCCAGCCTTAGAGGTAAGGACATCTAAAACTAGCTACATTTCACATTATCCTCCTGATAACTTAAGCATCGGAGCCCGTGTGACTAGAGTCGCACCGGTTTAG

Coding sequence (CDS)

ATGCTAAGTATGAGGGCCGAGGTGAACCTGGCCGAGGTCCGACCTACCGGGAAGCTCGGTCCGCCCAAGTATTCAGATCGGTCCGGAGGCCGAGTTCGAGCTGCAACCAGAAGTGAAGATCGGAAGGAAGCCACTGGGCTGCGATGGGCTCGGTCCCGACCCGTGGCACGGCCCACGGCCCTCCAGCGGCCCTTCGTCTTCAATCCACGGTTTCGCTCAGGCCCGCCAACGAAATTAGGGTTAGCTACCTATGAAATGTTCTGGAACAACCTGGCGACTATAAGTAGCGATCCAGCCTTAGAGGTAAGGACATCTAAAACTAGCTACATTTCACATTATCCTCCTGATAACTTAAGCATCGGAGCCCGTGTGACTAGAGTCGCACCGGTTTAG

Protein sequence

MLSMRAEVNLAEVRPTGKLGPPKYSDRSGGRVRAATRSEDRKEATGLRWARSRPVARPTALQRPFVFNPRFRSGPPTKLGLATYEMFWNNLATISSDPALEVRTSKTSYISHYPPDNLSIGARVTRVAPV

Homology

[Close]

BLAST of Moc09g38120 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 100 LEVRTSKTSYISHYPPDNLSIGARVTRVAPV 131
           LEVR SKTS ISHYPP NLSIGARVTRVAPV
Sbjct: 622 LEVRASKTSDISHYPPANLSIGARVTRVAPV 652

[Close]

BLAST of Moc09g38120 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 28/31 (90.32%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 100 LEVRTSKTSYISHYPPDNLSIGARVTRVAPV 131
           LEVR SKTS ISHYPP NLSIGARVTRVAPV
Sbjct: 622 LEVRASKTSDISHYPPANLSIGARVTRVAPV 652

The following BLAST results are available for this feature:

BLAST of Moc09g38120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158830.1	2.4e-04	90.32	uncharacterized protein LOC111025293 [Momordica charantia]	[more]

BLAST of Moc09g38120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g38120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DWY0	1.2e-04	90.32	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc09g38120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g38120.1	Moc09g38120.1	mRNA