Moc09g36500 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g36500
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
Location	chr9: 28132213 .. 28133655 (-)
RNA-Seq Expression	Moc09g36500
Synteny	Moc09g36500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACGGGCCTGATAGAAACCCTAATAATTTGGCGCCGGAGAATAAAACGGCGGCGAAATTAGGCGATCAGGTGGAAGGAATTAGTGGAAGTGAGAAACCTAACGTGGTCAGAGTTCCGAGAGTAAAAGTGGTTGCTCCTCCGCCGTTGACGGCTGAGCCCAAGGTGCCTTCCAAGTTTTCGCATCCGGCAATCCGGTGGCCGGTAACGTTCTTTCCCCCCATTTCTCTCATGCTCTGTTTCCTTCTCTTGAAATTCAAATTTTGTGTGTTGTGCACTGAATGAAAATTAACTCTCAGTTTTACGTCTCCCCATTTTTTATTTCGTTTTTCTAATTGTTAAATAACAAATTTTCATCTTCTGAGTTGGGCAAAGTCTTGATTTGGTTCCTATATTTTGAATTTTTTAATTTACTCCTGTTCCTTTATTTGCTTGGTTCATCTGGCACTCTCAAATTGCAGTACAAATATTATGAATAAATTTGTTAAAATATTCTCGTACATACTATTAATCAAGACGTCAATTTAAACATAATTCAACTGGTTAAAACATAAATAACCATATGCGATGTTAGAAATTCAAATCACTACCCCTACCCATCATTAATGAACTCATGAAAAAAGAAAAATACAAGGACCAAATATGCAAAAAGGATTTTTTTAAAGGTATATAGACCAAAGTTTATAAAAGTTAAAAGTATAGAAACTAAAATCAGATTTGAACGTATCTCATATCATATGTTTAAATTATATTTTTGTTCTTAAACTTCAAATAGATACATTTTGATTCATGAATTTGAATGTTATTCTATTTTGTTTGTTAAACTTTTGGCTCCTCGTAATTTTTTAAAGTTTATTCCGTTTCCAATTTTTTTAGTTATTAAACTTTTAAAATATGTATAGGAGTTCTAAAAAGAAAATTATTTTGATTACTTCTTTTATGTAAAATTAACTTGGTTATTAAATAGTTATTTCTGTTAATTATTATTATTATTATTATTTTGAGGAATTTTACTTTGATTTCTCTAGTTTCTGCATGTGCTTCCACCATCATAATTCATGGCTCTTGTTCTGCCAAACTAAAACAAATAAATATTTAGGTGTGCACTAATCAACATTCATCTCTGATTGACCACCATTAAATTTTTGACAAATAGATAAAATGAATTAAAAAAAATGAAATATATTTTTCTATTTTAAAAGAAAAAAGATGTCAAATTTTTAGTGACGGTCAACAAGAATATGAATGGATCCGTATGCCCTTAAATTTTATTAAAAAGAAAAAGATTGAAGTAAACTTTGGAACTATTTTCATGTGTTGATTTCATCTACTTTTCAGTTATATTCTTTAGGAGGATATCTCATCTTGAGGTGGGCTTGGACAAGATGGAAAGAGAGCCAATCTGATGGAGACGACAAAGGCAAAAAGAAAAAAGGATCTTAG

mRNA sequence

ATGTACGGGCCTGATAGAAACCCTAATAATTTGGCGCCGGAGAATAAAACGGCGGCGAAATTAGGCGATCAGGTGGAAGGAATTAGTGGAAGTGAGAAACCTAACGTGGTCAGAGTTCCGAGAGTAAAAGTGGTTGCTCCTCCGCCGTTGACGGCTGAGCCCAAGGTGCCTTCCAAGTTTTCGCATCCGGCAATCCGGTGGCCGTTATATTCTTTAGGAGGATATCTCATCTTGAGGTGGGCTTGGACAAGATGGAAAGAGAGCCAATCTGATGGAGACGACAAAGGCAAAAAGAAAAAAGGATCTTAG

Coding sequence (CDS)

ATGTACGGGCCTGATAGAAACCCTAATAATTTGGCGCCGGAGAATAAAACGGCGGCGAAATTAGGCGATCAGGTGGAAGGAATTAGTGGAAGTGAGAAACCTAACGTGGTCAGAGTTCCGAGAGTAAAAGTGGTTGCTCCTCCGCCGTTGACGGCTGAGCCCAAGGTGCCTTCCAAGTTTTCGCATCCGGCAATCCGGTGGCCGTTATATTCTTTAGGAGGATATCTCATCTTGAGGTGGGCTTGGACAAGATGGAAAGAGAGCCAATCTGATGGAGACGACAAAGGCAAAAAGAAAAAAGGATCTTAG

Protein sequence

MYGPDRNPNNLAPENKTAAKLGDQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLGGYLILRWAWTRWKESQSDGDDKGKKKKGS

Homology

[Close]

BLAST of Moc09g36500 vs. NCBI nr
Match: XP_022139262.1 (uncharacterized protein LOC111010218 [Momordica charantia])

HSP 1 Score: 211.8 bits (538), Expect = 2.7e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MYGPDRNPNNLAPENKTAAKLGDQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKF 60
           MYGPDRNPNNLAPENKTAAKLGDQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKF
Sbjct: 1   MYGPDRNPNNLAPENKTAAKLGDQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKF 60

Query: 61  SHPAIRWPLYSLGGYLILRWAWTRWKESQSDGDDKGKKKKGS 103
           SHPAIRWPLYSLGGYLILRWAWTRWKESQSDGDDKGKKKKGS
Sbjct: 61  SHPAIRWPLYSLGGYLILRWAWTRWKESQSDGDDKGKKKKGS 102

[Close]

BLAST of Moc09g36500 vs. NCBI nr
Match: XP_022957161.1 (uncharacterized protein LOC111458630 [Cucurbita moschata])

HSP 1 Score: 87.8 bits (216), Expect = 5.8e-14
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 20  KLGDQVEGIS--GSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLGGYLI 79
           KLGD  +  S     KPN+V +P  +V  PPPLTAE K P KFSHPAIRWPLY+LGG+LI
Sbjct: 42  KLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTAECKRPGKFSHPAIRWPLYALGGFLI 101

Query: 80  LRWAWTRWKESQSDGDDKGK 98
            RWA  +WK     G+D+GK
Sbjct: 102 ARWALKKWK----SGEDEGK 117

[Close]

BLAST of Moc09g36500 vs. NCBI nr
Match: XP_023553666.1 (uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 87.8 bits (216), Expect = 5.8e-14
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 20  KLGDQVEGIS--GSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLGGYLI 79
           KLGD  +  S    +KPN+V +P  +V  PPPLTAE K P KFSHPAIRWPLY+LGG+LI
Sbjct: 40  KLGDNQQQTSPLPPQKPNLVTLPGSQVPPPPPLTAECKRPGKFSHPAIRWPLYALGGFLI 99

Query: 80  LRWAWTRWKESQSDGDDKGK 98
            RWA  +WK     G+D+GK
Sbjct: 100 ARWALKKWK----SGEDEGK 115

[Close]

BLAST of Moc09g36500 vs. NCBI nr
Match: KAG6601203.1 (hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 20  KLGDQVEGIS--GSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLGGYLI 79
           KLGD  +  S     KPN+V +P  +V  PPPLTAE K P KFSHPAIRWPLY+LGG+LI
Sbjct: 42  KLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTAECKRPGKFSHPAIRWPLYALGGFLI 101

Query: 80  LRWAWTRWKESQSDGDDKGK 98
            RWA  +WK     G+D+GK
Sbjct: 102 ARWALKKWK----SGEDEGK 117

[Close]

BLAST of Moc09g36500 vs. NCBI nr
Match: KAG7031999.1 (hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-13
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 20  KLGDQVEGIS--GSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLGGYLI 79
           KLGD  +  S     KPN+V +P  +V  PPPLTAE K P KFSHPAIRWPLY+LGG+LI
Sbjct: 26  KLGDNQQQTSPLPPRKPNLVTLPGSEVPPPPPLTAECKRPGKFSHPAIRWPLYALGGFLI 85

Query: 80  LRWAWTRWKESQSDGDDKGK 98
            RWA  +WK     G+D+GK
Sbjct: 86  ARWALKKWK----SGEDEGK 101

[Close]

BLAST of Moc09g36500 vs. ExPASy TrEMBL
Match: A0A6J1CDG9 (uncharacterized protein LOC111010218 OS=Momordica charantia OX=3673 GN=LOC111010218 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MYGPDRNPNNLAPENKTAAKLGDQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKF 60
           MYGPDRNPNNLAPENKTAAKLGDQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKF
Sbjct: 1   MYGPDRNPNNLAPENKTAAKLGDQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKF 60

Query: 61  SHPAIRWPLYSLGGYLILRWAWTRWKESQSDGDDKGKKKKGS 103
           SHPAIRWPLYSLGGYLILRWAWTRWKESQSDGDDKGKKKKGS
Sbjct: 61  SHPAIRWPLYSLGGYLILRWAWTRWKESQSDGDDKGKKKKGS 102

[Close]

BLAST of Moc09g36500 vs. ExPASy TrEMBL
Match: A0A6J1GYG5 (uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC111458630 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 2.8e-14
Identity = 46/80 (57.50%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 20  KLGDQVEGIS--GSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLGGYLI 79
           KLGD  +  S     KPN+V +P  +V  PPPLTAE K P KFSHPAIRWPLY+LGG+LI
Sbjct: 42  KLGDNEQQTSPLPPRKPNLVTLPGSEVAPPPPLTAECKRPGKFSHPAIRWPLYALGGFLI 101

Query: 80  LRWAWTRWKESQSDGDDKGK 98
            RWA  +WK     G+D+GK
Sbjct: 102 ARWALKKWK----SGEDEGK 117

[Close]

BLAST of Moc09g36500 vs. ExPASy TrEMBL
Match: A0A6J1J8Z1 (uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.0e-13
Identity = 42/85 (49.41%), Postives = 54/85 (63.53%), Query Frame = 0


Query: 13 PENKTAAKLGDQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSL 72
          P N+  +   ++       +KPNVV +P  +V  PPPL AE K P KFSHPAIRW LY+L
Sbjct: 19 PRNRDKSGDNEEEPSPMPPQKPNVVTLPGSEVAPPPPLAAECKRPGKFSHPAIRWSLYAL 78

Query: 73 GGYLILRWAWTRWKESQSDGDDKGK 98
          GG++I RWA  RWK     G+D+GK
Sbjct: 79 GGFIIARWALKRWK----SGEDEGK 99

[Close]

BLAST of Moc09g36500 vs. ExPASy TrEMBL
Match: A0A1S3BGK5 (uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 4.5e-12
Identity = 42/85 (49.41%), Postives = 55/85 (64.71%), Query Frame = 0


Query: 15  NKTAAKLGDQ-VEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLG 74
           N    K+ DQ  E  +  EKP+VV +P   VV+PPP+ AE K P KFSHPA+ WPL +LG
Sbjct: 20  NNNRQKVVDQKKEETNPPEKPDVVTIPASGVVSPPPVKAEFKFPGKFSHPAVLWPLSALG 79

Query: 75  GYLILRWAWTRWKESQSDGDDKGKK 99
           G+LI+ WAW +W+      DD+ KK
Sbjct: 80  GFLIIWWAWQKWRPD----DDETKK 100

[Close]

BLAST of Moc09g36500 vs. ExPASy TrEMBL
Match: A0A6P3ZCG2 (uncharacterized protein LOC107413075 OS=Ziziphus jujuba OX=326968 GN=LOC107413075 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.2e-09
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = 0


Query: 23  DQVEGISGSEKPNVVRVPRVKVVAPPPLTAEPKVPSKFSHPAIRWPLYSLGGYLILRWAW 82
           D     S ++KP++V+ P+ ++VAPPP+  E +   K S+P I W +Y+LGG+L+LRW W
Sbjct: 56  DDERNQSETQKPDMVKFPKAQLVAPPPVAVESEEHGKTSNPVILWQVYALGGFLVLRWIW 115

Query: 83  TRWKESQSDGDDKGKKKKGS 103
            RW E +   D    KK+GS
Sbjct: 116 ARWNERKERKD----KKEGS 131

[Close]

BLAST of Moc09g36500 vs. TAIR 10
Match: AT3G52230.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast outer membrane, chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06
Identity = 27/73 (36.99%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 29  SGSEKPNVVRVPRVKVVAPPPLTAEP----KVPS--KFSHPAIRWPLYSLGGYLILRWAW 88
           +G ++P       V     PP +AEP      PS  + S+  I W +Y+LGG+L+L+WAW
Sbjct: 50  TGEKEPLKSTYETVTFPYNPPKSAEPIKFEAEPSSGRTSNSVILWQVYALGGFLVLKWAW 109

Query: 89  TRWKESQSDGDDK 96
            RW E     D K
Sbjct: 110 ARWNERNERSDKK 122

The following BLAST results are available for this feature:

BLAST of Moc09g36500 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139262.1	2.7e-51	100.00	uncharacterized protein LOC111010218 [Momordica charantia]	[more]
XP_022957161.1	5.8e-14	57.50	uncharacterized protein LOC111458630 [Cucurbita moschata]	[more]
XP_023553666.1	5.8e-14	57.50	uncharacterized protein LOC111811149 [Cucurbita pepo subsp. pepo]	[more]
KAG6601203.1	1.0e-13	57.50	hypothetical protein SDJN03_06436, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7031999.1	1.0e-13	57.50	hypothetical protein SDJN02_06041, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Moc09g36500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g36500 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CDG9	1.3e-51	100.00	uncharacterized protein LOC111010218 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1GYG5	2.8e-14	57.50	uncharacterized protein LOC111458630 OS=Cucurbita moschata OX=3662 GN=LOC1114586...	[more]
A0A6J1J8Z1	7.0e-13	49.41	uncharacterized protein LOC111483672 OS=Cucurbita maxima OX=3661 GN=LOC111483672...	[more]
A0A1S3BGK5	4.5e-12	49.41	uncharacterized protein LOC103489415 OS=Cucumis melo OX=3656 GN=LOC103489415 PE=...	[more]
A0A6P3ZCG2	1.2e-09	42.50	uncharacterized protein LOC107413075 OS=Ziziphus jujuba OX=326968 GN=LOC10741307...	[more]

BLAST of Moc09g36500 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52230.1	4.8e-06	36.99	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	PANTHER	PTHR36374	OS01G0969000 PROTEIN	coord: 10..100
None	No IPR available	PANTHER	PTHR36374:SF1	OS01G0969000 PROTEIN	coord: 10..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g36500.1	Moc09g36500.1	mRNA