Moc09g34120 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g34120
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	chr9: 26067085 .. 26067834 (+)
RNA-Seq Expression	Moc09g34120
Synteny	Moc09g34120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGAAACGAACGTGAGATTGAAGCTTGTGATAGAGTCGCACACAAAAAGAGTTGTTTATTGCGAAGCAGGGAAGAGCTTCGCCGACTTTCTTTTCGACCTACTTTCCCTCCCACTTGGGGCTGTAATTAGGCTGTTGAAAACGGAAGCCATGGTGGGATGCTTGGGAAATCTCTACCACAGCATAGAAACCTTTAACCAAACATATATACACTCAAACGAGGCCAAAAACGCAGTCTTGAAACCAAAACTCTCGTTCAACTCCTCCACTATGCCCACGCTTTTGCCTTCATATGCCGAGACTCCGCAAACCCAAACCCAAACCCAAATCCAAATCCCCTCACGTGGCCCATTTTATTTTGGTTCTGATGAAGAATTTACTATTCGAAGTCCAAGGTCAAGTAGACAGTCATTTACTTTTGCAGGAAATGATTCAACTGGATCAAAGTGGATATTCAAAACTAAACTAAAGGAGGATGGAACAATTGAACGTTACAAGGCAAGATTGGTCGCTCAAGGATACTCTCAGATAGAAGGAGTGGACTACGAAGAAACTTTTAGTCCTGTAATCAAGCCAACAACAATTCGGCTCATCCTTGCACTGGCAGTGACCTTCAACTGGCCCTTGCGACAACTAGATGTCAAAAATGCATTTCTCCATGGCTTTCTCAAGGAAGAAGTCTACATGTCTCAACCACCTGGAATTCAAGATCTAGAAAAACCACACTTCGTATGCAAGCTCAACTGA

mRNA sequence

ATGGGGGAAACGAACGTGAGATTGAAGCTTGTGATAGAGTCGCACACAAAAAGAGTTGTTTATTGCGAAGCAGGGAAGAGCTTCGCCGACTTTCTTTTCGACCTACTTTCCCTCCCACTTGGGGCTGTAATTAGGCTGTTGAAAACGGAAGCCATGGTGGGATGCTTGGGAAATCTCTACCACAGCATAGAAACCTTTAACCAAACATATATACACTCAAACGAGGCCAAAAACGCAGTCTTGAAACCAAAACTCTCGTTCAACTCCTCCACTATGCCCACGCTTTTGCCTTCATATGCCGAGACTCCGCAAACCCAAACCCAAACCCAAATCCAAATCCCCTCACGTGGCCCATTTTATTTTGGTTCTGATGAAGAATTTACTATTCGAAGTCCAAGGTCAAGTAGACAGTCATTTACTTTTGCAGGAAATGATTCAACTGGATCAAAGTGGATATTCAAAACTAAACTAAAGGAGGATGGAACAATTGAACGTTACAAGGCAAGATTGGTCGCTCAAGGATACTCTCAGATAGAAGGAGTGGACTACGAAGAAACTTTTAGTCCTGTAATCAAGCCAACAACAATTCGGCTCATCCTTGCACTGGCAGTGACCTTCAACTGGCCCTTGCGACAACTAGATGTCAAAAATGCATTTCTCCATGGCTTTCTCAAGGAAGAAGTCTACATGTCTCAACCACCTGGAATTCAAGATCTAGAAAAACCACACTTCGTATGCAAGCTCAACTGA

Coding sequence (CDS)

ATGGGGGAAACGAACGTGAGATTGAAGCTTGTGATAGAGTCGCACACAAAAAGAGTTGTTTATTGCGAAGCAGGGAAGAGCTTCGCCGACTTTCTTTTCGACCTACTTTCCCTCCCACTTGGGGCTGTAATTAGGCTGTTGAAAACGGAAGCCATGGTGGGATGCTTGGGAAATCTCTACCACAGCATAGAAACCTTTAACCAAACATATATACACTCAAACGAGGCCAAAAACGCAGTCTTGAAACCAAAACTCTCGTTCAACTCCTCCACTATGCCCACGCTTTTGCCTTCATATGCCGAGACTCCGCAAACCCAAACCCAAACCCAAATCCAAATCCCCTCACGTGGCCCATTTTATTTTGGTTCTGATGAAGAATTTACTATTCGAAGTCCAAGGTCAAGTAGACAGTCATTTACTTTTGCAGGAAATGATTCAACTGGATCAAAGTGGATATTCAAAACTAAACTAAAGGAGGATGGAACAATTGAACGTTACAAGGCAAGATTGGTCGCTCAAGGATACTCTCAGATAGAAGGAGTGGACTACGAAGAAACTTTTAGTCCTGTAATCAAGCCAACAACAATTCGGCTCATCCTTGCACTGGCAGTGACCTTCAACTGGCCCTTGCGACAACTAGATGTCAAAAATGCATTTCTCCATGGCTTTCTCAAGGAAGAAGTCTACATGTCTCAACCACCTGGAATTCAAGATCTAGAAAAACCACACTTCGTATGCAAGCTCAACTGA

Protein sequence

MGETNVRLKLVIESHTKRVVYCEAGKSFADFLFDLLSLPLGAVIRLLKTEAMVGCLGNLYHSIETFNQTYIHSNEAKNAVLKPKLSFNSSTMPTLLPSYAETPQTQTQTQIQIPSRGPFYFGSDEEFTIRSPRSSRQSFTFAGNDSTGSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN

Homology

[Close]

BLAST of Moc09g34120 vs. NCBI nr
Match: XP_022139306.1 (uncharacterized protein LOC111010253 isoform X2 [Momordica charantia])

HSP 1 Score: 497.7 bits (1280), Expect = 6.0e-137
Identity = 247/249 (99.20%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 1   MGETNVRLKLVIESHTKRVVYCEAGKSFADFLFDLLSLPLGAVIRLLKTEAMVGCLGNLY 60
           MGETNVRLKLVIESHT RVVYCEAGKSF DFLFDLLSLPLGAVIRLLKTEAMVGCLGNLY
Sbjct: 1   MGETNVRLKLVIESHTXRVVYCEAGKSFXDFLFDLLSLPLGAVIRLLKTEAMVGCLGNLY 60

Query: 61  HSIETFNQTYIHSNEAKNAVLKPKLSFNSSTMPTLLPSYAETPQTQTQTQIQIPSRGPFY 120
           HSIETFNQTYIHSNEAKNAVLKPKLSFNSSTMPTLLPSYAETPQTQTQTQIQIPSRGPFY
Sbjct: 61  HSIETFNQTYIHSNEAKNAVLKPKLSFNSSTMPTLLPSYAETPQTQTQTQIQIPSRGPFY 120

Query: 121 FGSDEEFTIRSPRSSRQSFTFAGNDSTGSKWIFKTKLKEDGTIERYKARLVAQGYSQIEG 180
           FGSDEEFTIRSPRSSRQSFTFAGNDSTGSKWIFKTKLKEDGTIERYKARLVAQGYSQIEG
Sbjct: 121 FGSDEEFTIRSPRSSRQSFTFAGNDSTGSKWIFKTKLKEDGTIERYKARLVAQGYSQIEG 180

Query: 181 VDYEETFSPVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLE 240
           VDYEETFSPVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLE
Sbjct: 181 VDYEETFSPVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLE 240

Query: 241 KPHFVCKLN 250
           KPHFVCKLN
Sbjct: 241 KPHFVCKLN 249

[Close]

BLAST of Moc09g34120 vs. NCBI nr
Match: RVX04530.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 164.9 bits (416), Expect = 9.2e-37
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 148 GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
           GSKW+FKTKLKEDGTI+RYKARLVA+G+SQI G+D+ ETFSPVIK TTIR+I +LAVT  
Sbjct: 776 GSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLG 835

Query: 208 WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
           W +RQLDVKNAFLHGFLKEEV+M QPPG  + + P+ VCKLN
Sbjct: 836 WKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLN 877

[Close]

BLAST of Moc09g34120 vs. NCBI nr
Match: RVW35654.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 164.9 bits (416), Expect = 9.2e-37
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 148 GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
           GSKW+FKTKLKEDGTI+RYKARLVA+G+SQI G+D+ ETFSPVIK TTIR+I +LAVT  
Sbjct: 631 GSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLG 690

Query: 208 WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
           W +RQLDVKNAFLHGFLKEEV+M QPPG  + + P+ VCKLN
Sbjct: 691 WKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLN 732

[Close]

BLAST of Moc09g34120 vs. NCBI nr
Match: RVW19921.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 164.9 bits (416), Expect = 9.2e-37
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 148  GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
            GSKW+FKTKLKEDGTI+RYKARLVA+G+SQI G+D+ ETFSPVIK TTIR+I +LAVT  
Sbjct: 953  GSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLG 1012

Query: 208  WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
            W +RQLDVKNAFLHGFLKEEV+M QPPG  + + P+ VCKLN
Sbjct: 1013 WKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLN 1054

[Close]

BLAST of Moc09g34120 vs. NCBI nr
Match: RVX04589.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 164.9 bits (416), Expect = 9.2e-37
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 148 GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
           GSKW+FKTKLKEDGTI+RYKARLVA+G+SQI G+D+ ETFSPVIK TTIR+I +LAVT  
Sbjct: 561 GSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLG 620

Query: 208 WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
           W +RQLDVKNAFLHGFLKEEV+M QPPG  + + P+ VCKLN
Sbjct: 621 WKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLN 662

[Close]

BLAST of Moc09g34120 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.1e-32
Identity = 62/101 (61.39%), Postives = 80/101 (79.21%), Query Frame = 0


Query: 148  GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
            G +WIF  K   DG++ RYKARLVA+GY+Q  G+DY ETFSPVIK T+IR++L +AV  +
Sbjct: 999  GCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRS 1058

Query: 208  WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKL 249
            WP+RQLDV NAFL G L ++VYMSQPPG  D ++P++VCKL
Sbjct: 1059 WPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKL 1099

[Close]

BLAST of Moc09g34120 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 9.2e-32
Identity = 76/180 (42.22%), Postives = 104/180 (57.78%), Query Frame = 0


Query: 69   TYIHSNEAKNAVLKPKLSFNSSTMPTLLPSYAETPQTQTQTQIQIPSRGPFYFGSDEEFT 128
            T+  +  AK+ + KP   ++ +T      S A   + +T  Q     R     GS+    
Sbjct: 909  THSMATRAKDGIRKPNQKYSYAT------SLAANSEPRTAIQAMKDDRWRQAMGSEINAQ 968

Query: 129  IRSPRSSRQSFTFAGNDSTGSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFS 188
            I +                G +WIF  K   DG++ RYKARLVA+GY+Q  G+DY ETFS
Sbjct: 969  IGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFS 1028

Query: 189  PVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKL 248
            PVIK T+IR++L +AV  +WP+RQLDV NAFL G L +EVYMSQPPG  D ++P +VC+L
Sbjct: 1029 PVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRL 1082

[Close]

BLAST of Moc09g34120 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.4e-26
Identity = 55/100 (55.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 150 KWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFNWP 209
           KW+FK K   D  + RYKARLV +G+ Q +G+D++E FSPV+K T+IR IL+LA + +  
Sbjct: 858 KWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLE 917

Query: 210 LRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
           + QLDVK AFLHG L+EE+YM QP G +   K H VCKLN
Sbjct: 918 VEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLN 957

[Close]

BLAST of Moc09g34120 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 103.2 bits (256), Expect = 4.3e-21
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 149  SKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFNW 208
            S+W+F  K  E G   RYKARLVA+G++Q   +DYEETF+PV + ++ R IL+L + +N 
Sbjct: 937  SRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNL 996

Query: 209  PLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
             + Q+DVK AFL+G LKEE+YM  P GI        VCKLN
Sbjct: 997  KVHQMDVKTAFLNGTLKEEIYMRLPQGISC--NSDNVCKLN 1035

[Close]

BLAST of Moc09g34120 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.8e-12
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 148 GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALA 204
           G KW+FKTKL  DGT++R KARLVA+G+ Q EG+ + ET+SPV++  TIR IL +A
Sbjct: 70  GCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Moc09g34120 vs. ExPASy TrEMBL
Match: A0A6J1CCA1 (uncharacterized protein LOC111010253 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111010253 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 2.9e-137
Identity = 247/249 (99.20%), Postives = 247/249 (99.20%), Query Frame = 0


Query: 1   MGETNVRLKLVIESHTKRVVYCEAGKSFADFLFDLLSLPLGAVIRLLKTEAMVGCLGNLY 60
           MGETNVRLKLVIESHT RVVYCEAGKSF DFLFDLLSLPLGAVIRLLKTEAMVGCLGNLY
Sbjct: 1   MGETNVRLKLVIESHTXRVVYCEAGKSFXDFLFDLLSLPLGAVIRLLKTEAMVGCLGNLY 60

Query: 61  HSIETFNQTYIHSNEAKNAVLKPKLSFNSSTMPTLLPSYAETPQTQTQTQIQIPSRGPFY 120
           HSIETFNQTYIHSNEAKNAVLKPKLSFNSSTMPTLLPSYAETPQTQTQTQIQIPSRGPFY
Sbjct: 61  HSIETFNQTYIHSNEAKNAVLKPKLSFNSSTMPTLLPSYAETPQTQTQTQIQIPSRGPFY 120

Query: 121 FGSDEEFTIRSPRSSRQSFTFAGNDSTGSKWIFKTKLKEDGTIERYKARLVAQGYSQIEG 180
           FGSDEEFTIRSPRSSRQSFTFAGNDSTGSKWIFKTKLKEDGTIERYKARLVAQGYSQIEG
Sbjct: 121 FGSDEEFTIRSPRSSRQSFTFAGNDSTGSKWIFKTKLKEDGTIERYKARLVAQGYSQIEG 180

Query: 181 VDYEETFSPVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLE 240
           VDYEETFSPVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLE
Sbjct: 181 VDYEETFSPVIKPTTIRLILALAVTFNWPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLE 240

Query: 241 KPHFVCKLN 250
           KPHFVCKLN
Sbjct: 241 KPHFVCKLN 249

[Close]

BLAST of Moc09g34120 vs. ExPASy TrEMBL
Match: A0A438J6E1 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3094 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.4e-37
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 148 GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
           GSKW+FKTKLKEDGTI+RYKARLVA+G+SQI G+D+ ETFSPVIK TTIR+I +LAVT  
Sbjct: 776 GSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLG 835

Query: 208 WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
           W +RQLDVKNAFLHGFLKEEV+M QPPG  + + P+ VCKLN
Sbjct: 836 WKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLN 877

[Close]

BLAST of Moc09g34120 vs. ExPASy TrEMBL
Match: A0A438J6K3 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_103 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.4e-37
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 148 GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
           GSKW+FKTKLKEDGTI+RYKARLVA+G+SQI G+D+ ETFSPVIK TTIR+I +LAVT  
Sbjct: 561 GSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLG 620

Query: 208 WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
           W +RQLDVKNAFLHGFLKEEV+M QPPG  + + P+ VCKLN
Sbjct: 621 WKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLN 662

[Close]

BLAST of Moc09g34120 vs. ExPASy TrEMBL
Match: A0A438C9J9 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_1040 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.4e-37
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 148  GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
            GSKW+FKTKLKEDGTI+RYKARLVA+G+SQI G+D+ ETFSPVIK TTIR+I +LAVT  
Sbjct: 953  GSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLG 1012

Query: 208  WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
            W +RQLDVKNAFLHGFLKEEV+M QPPG  + + P+ VCKLN
Sbjct: 1013 WKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLN 1054

[Close]

BLAST of Moc09g34120 vs. ExPASy TrEMBL
Match: A0A438DJK3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2473 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.4e-37
Identity = 76/102 (74.51%), Postives = 89/102 (87.25%), Query Frame = 0


Query: 148 GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
           GSKW+FKTKLKEDGTI+RYKARLVA+G+SQI G+D+ ETFSPVIK TTIR+I +LAVT  
Sbjct: 631 GSKWVFKTKLKEDGTIDRYKARLVARGFSQIPGLDFGETFSPVIKHTTIRMIFSLAVTLG 690

Query: 208 WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQDLEKPHFVCKLN 250
           W +RQLDVKNAFLHGFLKEEV+M QPPG  + + P+ VCKLN
Sbjct: 691 WKMRQLDVKNAFLHGFLKEEVFMEQPPGFINEDLPNHVCKLN 732

[Close]

BLAST of Moc09g34120 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 123.2 bits (308), Expect = 2.9e-28
Identity = 59/105 (56.19%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 148 GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALAVTFN 207
           G KW++K K   DGTIERYKARLVA+GY+Q EG+D+ ETFSPV K T+++LILA++  +N
Sbjct: 128 GCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYN 187

Query: 208 WPLRQLDVKNAFLHGFLKEEVYMSQPPGIQ----DLEKPHFVCKL 249
           + L QLD+ NAFL+G L EE+YM  PPG      D   P+ VC L
Sbjct: 188 FTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

[Close]

BLAST of Moc09g34120 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-13
Identity = 33/56 (58.93%), Postives = 44/56 (78.57%), Query Frame = 0


Query: 148 GSKWIFKTKLKEDGTIERYKARLVAQGYSQIEGVDYEETFSPVIKPTTIRLILALA 204
           G KW+FKTKL  DGT++R KARLVA+G+ Q EG+ + ET+SPV++  TIR IL +A
Sbjct: 70  GCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Moc09g34120 vs. TAIR 10
Match: AT3G09110.1 (Protein of unknown function (DUF674) )

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-10
Identity = 32/82 (39.02%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 8  LKLVIESHTKRVVYCEAGKSFADFLFDLLSLPLGAVIRLLK-----TEAMVGCLGNLYHS 67
          L+L+I+    RV+  EAGK F D L  LL+LP+G ++RLL+       ++VGCL NLY S
Sbjct: 12 LRLLIDEEKNRVILAEAGKDFVDVLCSLLTLPMGTIVRLLEKHQNPQSSVVGCLHNLYKS 71

Query: 68 IETFNQTYIHSNEAKNAVLKPK 85
          +   +     S   K+ +L P+
Sbjct: 72 VADMDVDNFESQACKHFLLHPR 93

[Close]

BLAST of Moc09g34120 vs. TAIR 10
Match: AT5G01130.1 (Protein of unknown function (DUF674) )

HSP 1 Score: 62.0 bits (149), Expect = 7.8e-10
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 3  ETNVRLKLVIESHTKRVVYCEAGKSFADFLFDLLSLPLGAVIRLLKTE-----AMVGCLG 62
          E  V L+L I+    +VV  EA K+F D LF LL+LP+G +IRLL+         VGC  
Sbjct: 7  EPKVSLRLFIDEEKNKVVLAEASKAFVDVLFSLLTLPMGTIIRLLEEHRESQPITVGCFS 66

Query: 63 NLYHSIETFNQTYIHSNEAKNAVLKPK 85
          NLY S+         ++  K+ +L P+
Sbjct: 67 NLYRSVAEMGIDNFKTDVCKHILLHPR 93

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BLAST of Moc09g34120 vs. TAIR 10
Match: AT5G43240.1 (Protein of unknown function (DUF674) )

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-09
Identity = 28/83 (33.73%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 6  VRLKLVIESHTKRVVYCEAGKSFADFLFDLLSLPLGAVIRLLK-----TEAMVGCLGNLY 65
          ++LKL+I+    +VV+ EAGK F D LF   +LP+G ++RLL+      +  +GC  N+Y
Sbjct: 10 IKLKLLIDEEKNKVVFVEAGKDFVDLLFSFFTLPMGTIVRLLEMYKKSQKIAIGCFSNIY 69

Query: 66 HSIETFNQTYIHSNEAKNAVLKP 84
           S+ +    +  +   K  +L P
Sbjct: 70 ASVVSMGIEHFLTEACKQMLLYP 92

The following BLAST results are available for this feature:

BLAST of Moc09g34120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139306.1	6.0e-137	99.20	uncharacterized protein LOC111010253 isoform X2 [Momordica charantia]	[more]
RVX04530.1	9.2e-37	74.51	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW35654.1	9.2e-37	74.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW19921.1	9.2e-37	74.51	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVX04589.1	9.2e-37	74.51	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Moc09g34120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	4.1e-32	61.39	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	9.2e-32	42.22	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	4.4e-26	55.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	4.3e-21	50.50	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92520	4.8e-12	58.93	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Moc09g34120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CCA1	2.9e-137	99.20	uncharacterized protein LOC111010253 isoform X2 OS=Momordica charantia OX=3673 G...	[more]
A0A438J6E1	4.4e-37	74.51	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438J6K3	4.4e-37	74.51	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438C9J9	4.4e-37	74.51	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438DJK3	4.4e-37	74.51	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of Moc09g34120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.9e-28	56.19	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	3.4e-13	58.93	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
AT3G09110.1	3.5e-10	39.02	Protein of unknown function (DUF674)	[more]
AT5G01130.1	7.8e-10	37.93	Protein of unknown function (DUF674)	[more]
AT5G43240.1	1.3e-09	33.73	Protein of unknown function (DUF674)	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 146..249 e-value: 3.8E-32 score: 111.8
IPR007750	Protein of unknown function DUF674	PFAM	PF05056	DUF674	coord: 3..85 e-value: 5.3E-21 score: 75.0
IPR007750	Protein of unknown function DUF674	PANTHER	PTHR33103	OS01G0153900 PROTEIN	coord: 3..102
None	No IPR available	PANTHER	PTHR33103:SF50	OS01G0154200 PROTEIN	coord: 3..102
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 150..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g34120.1	Moc09g34120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0046274	lignin catabolic process
cellular_component	GO:0048046	apoplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0052716	hydroquinone:oxygen oxidoreductase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding