Moc09g33230 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g33230
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Cytochrome c oxidase subunit 2
Location	chr9: 25227886 .. 25228344 (+)
RNA-Seq Expression	Moc09g33230
Synteny	Moc09g33230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAAACATTTATTGTTAGGGGGGCTGCCCGGGAACTCTTCGCGAAGTACCAACGCTTGGCGCTTCGTAATCAATATACAAAAGTTAACCATCTCGTATGGGTTCAATTGAGAGACATGCCCCACAGCCTCGCAAGAAGCTTCATAGTCAGGGGTGACACAGCTTGTTTGCCTTTCTTCTTTCTTTTCCGTACATTAGGGTCGTTCGGGCGGAAAACCGAGTTGCATACTTGCACCCGGAAACATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCACCCGGGGTGCGAGCCACCTGAGAAGCAAGCTATTACAGCGAGCTCGGGTAGGCTCAAGATCAGTATACTTAAAAAAAGAAATTTTCTGTTGGGTGCTTTCTTTCTTTTCACTTTTCTATTCGCTTGTTTGGTTCCTCGCCTGCGGGATGCTCGTTGGTTCTACGGTTGCCCGTGA

mRNA sequence

ATGCAAACATTTATTGTTAGGGGGGCTGCCCGGGAACTCTTCGCGAAGTACCAACGCTTGGCGCTTCGTAATCAATATACAAAAGTTAACCATCTCGTATGGGTTCAATTGAGAGACATGCCCCACAGCCTCGCAAGAAGCTTCATAGTCAGGGGTGACACAGCTTGTTTGCCTTTCTTCTTTCTTTTCCGTACATTAGGGTCGTTCGGGCGGAAAACCGAGTTGCATACTTGCACCCGGAAACATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCACCCGGGGTGCGAGCCACCTGAGAAGCAAGCTATTACAGCGAGCTCGGGTAGGCTCAAGATCAGTATACTTAAAAAAAGAAATTTTCTGTTGGGTGCTTTCTTTCTTTTCACTTTTCTATTCGCTTGTTTGGTTCCTCGCCTGCGGGATGCTCGTTGGTTCTACGGTTGCCCGTGA

Coding sequence (CDS)

ATGCAAACATTTATTGTTAGGGGGGCTGCCCGGGAACTCTTCGCGAAGTACCAACGCTTGGCGCTTCGTAATCAATATACAAAAGTTAACCATCTCGTATGGGTTCAATTGAGAGACATGCCCCACAGCCTCGCAAGAAGCTTCATAGTCAGGGGTGACACAGCTTGTTTGCCTTTCTTCTTTCTTTTCCGTACATTAGGGTCGTTCGGGCGGAAAACCGAGTTGCATACTTGCACCCGGAAACATAGGCCGACTGCTGAGCCCACTCTGGCTCAGCCGCACCACCCGGGGTGCGAGCCACCTGAGAAGCAAGCTATTACAGCGAGCTCGGGTAGGCTCAAGATCAGTATACTTAAAAAAAGAAATTTTCTGTTGGGTGCTTTCTTTCTTTTCACTTTTCTATTCGCTTGTTTGGTTCCTCGCCTGCGGGATGCTCGTTGGTTCTACGGTTGCCCGTGA

Protein sequence

MQTFIVRGAARELFAKYQRLALRNQYTKVNHLVWVQLRDMPHSLARSFIVRGDTACLPFFFLFRTLGSFGRKTELHTCTRKHRPTAEPTLAQPHHPGCEPPEKQAITASSGRLKISILKKRNFLLGAFFLFTFLFACLVPRLRDARWFYGCP

Homology

[Close]

BLAST of Moc09g33230 vs. NCBI nr
Match: GEY07292.1 (cytochrome c oxidase subunit 2-1, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 64.7 bits (156), Expect = 7.9e-07
Identity = 37/73 (50.68%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 37  LRDMPHSLARSFIVRGDTACLPFFFLFRTLGSFGRKTELHTCTRKHRPTAEPTLAQPHHP 96
           ++     +A+  IV G     P  FL  TL        L+ C  K RPTAEPTLAQPHHP
Sbjct: 71  VKGFXRDVAKEPIVLGGDRRNPVMFLM-TLSC------LYACAWKDRPTAEPTLAQPHHP 130

Query: 97  GCEPPEKQAITAS 110
           GCEPP+KQAIT S
Sbjct: 131 GCEPPKKQAITMS 136

[Close]

BLAST of Moc09g33230 vs. NCBI nr
Match: KZM89906.1 (hypothetical protein DCAR_022731 [Daucus carota subsp. sativus])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 75  LHTCTRKHRPTAEPTLAQPHHPGCEPPEKQAITAS 110
           L+ C RK RPTAEP LAQ HHPGCEPPEKQAITAS
Sbjct: 44  LYACARKDRPTAEPILAQTHHPGCEPPEKQAITAS 78

[Close]

BLAST of Moc09g33230 vs. NCBI nr
Match: CAB4071510.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 80  RKHRPTAEPTLAQPHHPGCEPPEKQAITAS 110
           RK RPTAEPTLAQPHHPGCEPPEKQAITAS
Sbjct: 148 RKDRPTAEPTLAQPHHPGCEPPEKQAITAS 177

[Close]

BLAST of Moc09g33230 vs. NCBI nr
Match: CAB4071508.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 83  RPTAEPTLAQPHHPGCEPPEKQAITAS 110
           RPTAEPTLAQPHHPGCEPPEKQAITAS
Sbjct: 187 RPTAEPTLAQPHHPGCEPPEKQAITAS 213

[Close]

BLAST of Moc09g33230 vs. NCBI nr
Match: CAB4076248.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 83  RPTAEPTLAQPHHPGCEPPEKQAITAS 110
           RPTAEPTLAQPHHPGCEPPEKQAITAS
Sbjct: 198 RPTAEPTLAQPHHPGCEPPEKQAITAS 224

[Close]

BLAST of Moc09g33230 vs. ExPASy TrEMBL
Match: A0A164V724 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022731 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-07
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0


Query: 75  LHTCTRKHRPTAEPTLAQPHHPGCEPPEKQAITAS 110
           L+ C RK RPTAEP LAQ HHPGCEPPEKQAITAS
Sbjct: 44  LYACARKDRPTAEPILAQTHHPGCEPPEKQAITAS 78

[Close]

BLAST of Moc09g33230 vs. ExPASy TrEMBL
Match: A0A6S7KLM7 (COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS485 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.5e-07
Identity = 29/30 (96.67%), Postives = 29/30 (96.67%), Query Frame = 0


Query: 80  RKHRPTAEPTLAQPHHPGCEPPEKQAITAS 110
           RK RPTAEPTLAQPHHPGCEPPEKQAITAS
Sbjct: 148 RKDRPTAEPTLAQPHHPGCEPPEKQAITAS 177

[Close]

BLAST of Moc09g33230 vs. ExPASy TrEMBL
Match: A0A6S7KVC5 (COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS486 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 83  RPTAEPTLAQPHHPGCEPPEKQAITAS 110
           RPTAEPTLAQPHHPGCEPPEKQAITAS
Sbjct: 187 RPTAEPTLAQPHHPGCEPPEKQAITAS 213

[Close]

BLAST of Moc09g33230 vs. ExPASy TrEMBL
Match: A0A6S7KNK6 (COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1346 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 83  RPTAEPTLAQPHHPGCEPPEKQAITAS 110
           RPTAEPTLAQPHHPGCEPPEKQAITAS
Sbjct: 133 RPTAEPTLAQPHHPGCEPPEKQAITAS 159

[Close]

BLAST of Moc09g33230 vs. ExPASy TrEMBL
Match: A0A6S7L7R5 (COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS4995 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.5e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 83  RPTAEPTLAQPHHPGCEPPEKQAITAS 110
           RPTAEPTLAQPHHPGCEPPEKQAITAS
Sbjct: 198 RPTAEPTLAQPHHPGCEPPEKQAITAS 224

The following BLAST results are available for this feature:

BLAST of Moc09g33230 vs. NCBI nr


Match Name	E-value	Identity	Description
GEY07292.1	7.9e-07	50.68	cytochrome c oxidase subunit 2-1, mitochondrial [Tanacetum cinerariifolium]	[more]
KZM89906.1	1.0e-06	82.86	hypothetical protein DCAR_022731 [Daucus carota subsp. sativus]	[more]
CAB4071510.1	1.3e-06	96.67	unnamed protein product [Lactuca saligna]	[more]
CAB4071508.1	1.1e-05	100.00	unnamed protein product [Lactuca saligna]	[more]
CAB4076248.1	1.1e-05	100.00	unnamed protein product [Lactuca saligna]	[more]

BLAST of Moc09g33230 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g33230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A164V724	5.0e-07	82.86	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_022731 ...	[more]
A0A6S7KLM7	6.5e-07	96.67	COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS485 ...	[more]
A0A6S7KVC5	5.5e-06	100.00	COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS486 ...	[more]
A0A6S7KNK6	5.5e-06	100.00	COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1346...	[more]
A0A6S7L7R5	5.5e-06	100.00	COX2_CUA domain-containing protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS4995...	[more]

BLAST of Moc09g33230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 80..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g33230.1	Moc09g33230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0004129	cytochrome-c oxidase activity