Moc09g31400 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g31400
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr9: 23734365 .. 23734655 (-)
RNA-Seq Expression	Moc09g31400
Synteny	Moc09g31400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGAAGATCAAAAAGCCGAGCAGGAGAAAACAAGGAAAGATATTGAGGAGTTGCGAGAAAAGTTAGATGCCATCCTCCTCGCGTTGGAAAAAGGCAAAGCGGCTGCAGATCCTGCTACATCTAGCAACCCTGTTCATGAGCCGCAAGAAACCCCGCCTTATCCACCTGGGTACGGTCCACCTCTTAGGCCAGTGGCAGAGGGTTTCATGCCACAATATACAACGTACAACCTTCTGTATGACGTCCCAGTTGGTCAGTATCCGCATCCCTTTGTTAAGGGAGCTTAG

mRNA sequence

ATGATGGAAGATCAAAAAGCCGAGCAGGAGAAAACAAGGAAAGATATTGAGGAGTTGCGAGAAAAGTTAGATGCCATCCTCCTCGCGTTGGAAAAAGGCAAAGCGGCTGCAGATCCTGCTACATCTAGCAACCCTGTTCATGAGCCGCAAGAAACCCCGCCTTATCCACCTGGGTACGGTCCACCTCTTAGGCCAGTGGCAGAGGGTTTCATGCCACAATATACAACGTACAACCTTCTGTATGACGTCCCAGTTGGTCAGTATCCGCATCCCTTTGTTAAGGGAGCTTAG

Coding sequence (CDS)

ATGATGGAAGATCAAAAAGCCGAGCAGGAGAAAACAAGGAAAGATATTGAGGAGTTGCGAGAAAAGTTAGATGCCATCCTCCTCGCGTTGGAAAAAGGCAAAGCGGCTGCAGATCCTGCTACATCTAGCAACCCTGTTCATGAGCCGCAAGAAACCCCGCCTTATCCACCTGGGTACGGTCCACCTCTTAGGCCAGTGGCAGAGGGTTTCATGCCACAATATACAACGTACAACCTTCTGTATGACGTCCCAGTTGGTCAGTATCCGCATCCCTTTGTTAAGGGAGCTTAG

Protein sequence

MMEDQKAEQEKTRKDIEELREKLDAILLALEKGKAAADPATSSNPVHEPQETPPYPPGYGPPLRPVAEGFMPQYTTYNLLYDVPVGQYPHPFVKGA

Homology

[Close]

BLAST of Moc09g31400 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 177.6 bits (449), Expect = 5.3e-41
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 2  MEDQKAEQEKTRKDIEELREKLDAILLALEKGKAAADPATSSNPVHEPQETPPYPPGYGP 61
          MEDQKAEQEKTRKDIEELREKLD I L LEKGKA ADPATSSNP+HEPQETPPYPPGYGP
Sbjct: 1  MEDQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGP 60

Query: 62 PLRPVAEGFMPQYTTYNLLYDVPVGQYPHPFVKGA 97
          PLRPVAEGFMPQYTTYN LYDVP+GQYPH FVKGA
Sbjct: 61 PLRPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGA 95

[Close]

BLAST of Moc09g31400 vs. NCBI nr
Match: XP_022149382.1 (uncharacterized protein LOC111017812 [Momordica charantia])

HSP 1 Score: 145.2 bits (365), Expect = 2.9e-31
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 2  MEDQKAEQEKTRKDIEELREKLDAILLALEKGKAAADPATSSNPVHEPQETPPYPPGYGP 61
          M+DQKAEQEK RKDIEELREKLD ILLALEKGK  ADP TSSNPVH+ QE PPYP GY P
Sbjct: 1  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDP 60

Query: 62 PLRPVAEGFMPQYTTYNLLYDVPVGQYPHPFVKG 96
          PLR VAEGFM Q TTYN LYD+ VGQYP PFVKG
Sbjct: 61 PLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKG 94

[Close]

BLAST of Moc09g31400 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 121.3 bits (303), Expect = 4.5e-24
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1  MMEDQKAEQEKTRKDIEELREKLDAILLALEKGKAAADPATSSNPVHEPQETPPYPPGY- 60
          M +D+K+EQEKTRKDIEELREKLDAILLALEKGK  A+   +SNP+HEP  TP +PPG+ 
Sbjct: 1  MEDDRKSEQEKTRKDIEELREKLDAILLALEKGKTIAE---TSNPIHEP-PTPQFPPGFE 60

Query: 61 ------GPPLRPVAEGFMPQYTTYNLLYDVPVGQYPHPFVKG 96
                GP  RP+ EGFM QYTTYN LYD+P GQ+P P V+G
Sbjct: 61 PSFRPAGPSFRPMTEGFMSQYTTYNPLYDIPAGQFPPPLVRG 98

[Close]

BLAST of Moc09g31400 vs. NCBI nr
Match: XP_022147190.1 (uncharacterized protein LOC111016201 [Momordica charantia])

HSP 1 Score: 103.6 bits (257), Expect = 9.7e-19
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MMEDQKAEQEKTRKDIEELREKLDAILLALEKGKAAADPATSSNPVHEPQETPPYP 57
           MMEDQKAEQEKTRKDIEELREKLD ILLALEKGK+AADPATSSNPVHEPQETPPYP
Sbjct: 481 MMEDQKAEQEKTRKDIEELREKLDVILLALEKGKSAADPATSSNPVHEPQETPPYP 536

[Close]

BLAST of Moc09g31400 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 55.5 bits (132), Expect = 3.0e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0


Query: 71 MPQYTTYNLLYDVPVGQYPHPFVKGA 97
          MPQYTTYN LYDVPVGQY HPFVKGA
Sbjct: 1  MPQYTTYNPLYDVPVGQYLHPFVKGA 26

[Close]

BLAST of Moc09g31400 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 2.6e-41
Identity = 87/95 (91.58%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 2  MEDQKAEQEKTRKDIEELREKLDAILLALEKGKAAADPATSSNPVHEPQETPPYPPGYGP 61
          MEDQKAEQEKTRKDIEELREKLD I L LEKGKA ADPATSSNP+HEPQETPPYPPGYGP
Sbjct: 1  MEDQKAEQEKTRKDIEELREKLDXIXLXLEKGKATADPATSSNPIHEPQETPPYPPGYGP 60

Query: 62 PLRPVAEGFMPQYTTYNLLYDVPVGQYPHPFVKGA 97
          PLRPVAEGFMPQYTTYN LYDVP+GQYPH FVKGA
Sbjct: 61 PLRPVAEGFMPQYTTYNPLYDVPIGQYPHTFVKGA 95

[Close]

BLAST of Moc09g31400 vs. ExPASy TrEMBL
Match: A0A6J1D7T3 (uncharacterized protein LOC111017812 OS=Momordica charantia OX=3673 GN=LOC111017812 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.4e-31
Identity = 76/94 (80.85%), Postives = 79/94 (84.04%), Query Frame = 0


Query: 2  MEDQKAEQEKTRKDIEELREKLDAILLALEKGKAAADPATSSNPVHEPQETPPYPPGYGP 61
          M+DQKAEQEK RKDIEELREKLD ILLALEKGK  ADP TSSNPVH+ QE PPYP GY P
Sbjct: 1  MKDQKAEQEKIRKDIEELREKLDVILLALEKGKTVADPTTSSNPVHDQQEIPPYPLGYDP 60

Query: 62 PLRPVAEGFMPQYTTYNLLYDVPVGQYPHPFVKG 96
          PLR VAEGFM Q TTYN LYD+ VGQYP PFVKG
Sbjct: 61 PLRLVAEGFMQQNTTYNPLYDILVGQYPPPFVKG 94

[Close]

BLAST of Moc09g31400 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 0


Query: 1  MMEDQKAEQEKTRKDIEELREKLDAILLALEKGKAAADPATSSNPVHEPQETPPYPPGY- 60
          M +D+K+EQEKTRKDIEELREKLDAILLALEKGK  A+   +SNP+HEP  TP +PPG+ 
Sbjct: 1  MEDDRKSEQEKTRKDIEELREKLDAILLALEKGKTIAE---TSNPIHEP-PTPQFPPGFE 60

Query: 61 ------GPPLRPVAEGFMPQYTTYNLLYDVPVGQYPHPFVKG 96
                GP  RP+ EGFM QYTTYN LYD+P GQ+P P V+G
Sbjct: 61 PSFRPAGPSFRPMTEGFMSQYTTYNPLYDIPAGQFPPPLVRG 98

[Close]

BLAST of Moc09g31400 vs. ExPASy TrEMBL
Match: A0A6J1CZG4 (uncharacterized protein LOC111016201 OS=Momordica charantia OX=3673 GN=LOC111016201 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.7e-19
Identity = 54/56 (96.43%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 1   MMEDQKAEQEKTRKDIEELREKLDAILLALEKGKAAADPATSSNPVHEPQETPPYP 57
           MMEDQKAEQEKTRKDIEELREKLD ILLALEKGK+AADPATSSNPVHEPQETPPYP
Sbjct: 481 MMEDQKAEQEKTRKDIEELREKLDVILLALEKGKSAADPATSSNPVHEPQETPPYP 536

[Close]

BLAST of Moc09g31400 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 0


Query: 71 MPQYTTYNLLYDVPVGQYPHPFVKGA 97
          MPQYTTYN LYDVPVGQY HPFVKGA
Sbjct: 1  MPQYTTYNPLYDVPVGQYLHPFVKGA 26

The following BLAST results are available for this feature:

BLAST of Moc09g31400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022157796.1	5.3e-41	91.58	LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]	[more]
XP_022149382.1	2.9e-31	80.85	uncharacterized protein LOC111017812 [Momordica charantia]	[more]
XP_022155098.1	4.5e-24	64.71	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_022147190.1	9.7e-19	96.43	uncharacterized protein LOC111016201 [Momordica charantia]	[more]
XP_022147189.1	3.0e-04	92.31	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]

BLAST of Moc09g31400 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g31400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZ90	2.6e-41	91.58	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]
A0A6J1D7T3	1.4e-31	80.85	uncharacterized protein LOC111017812 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DM29	2.2e-24	64.71	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A6J1CZG4	4.7e-19	96.43	uncharacterized protein LOC111016201 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1D099	1.5e-04	92.31	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]

BLAST of Moc09g31400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 2..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g31400.1	Moc09g31400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity