Moc09g31390 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g31390
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr9: 23733270 .. 23734325 (-)
RNA-Seq Expression	Moc09g31390
Synteny	Moc09g31390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCCACCCCCTACAGTCCTTAATCTAGGTGGTCTCCCAGCCAAGACAGACCCAGTCGGACAAAATGCCCCTAGTAACGAGAAGTTTGAAGTTCTGGAGGAAAGATTAAGAGCAATAGAGGGGACAGACGTTTTTGGCAACATCGATGCCTCACAATTGTTTTTGGTGTCTGGATTAGTCATCCCTCCAAAATTCAAGGTGCCAGAGTTTGAGAAGTACGATGGTTCTTCTTGTCCTAAGAATCATCTTATAATGTACTGTAGGAAGATGGCAGCGTACGTCCAAAATGACAAATTGTTGATACACTGCTTCCAAGATAGTTTATCTGGTCCGGCCTCTCATTGGTACATGCAGTTAGATAGCTCTCATTTTGGCTCGTGGAAGAATCTGGCCGACTCCTTCCTAAAACAATATAAGCATAACATAGATATGGCTCCAGATCGCTTAGATTTACAGAGGATGGAGAAGAAGAGTACAAAGAGCTTTAAGGAGTATGCTCAAAGGTGGAGGGACACGGCACCTCAAGTCCAACCTCCTTTAACAGATAAGGAGCTATCTGCCATGTTCATCAATACCCTAAAACATCATTTCTATGATCGGATGATAGGAAGCGCTTCCACAAATTTATTTGATATTATGACCATCGGAGAAAGGATCAAATATGGGGTTAGACATGGGCGAATAACCAGTATTGCCGATGAGCCATTGGCCGCAAAGAAGGCAAGTCATTCCAAGAAGAAGGAAGGTGAGGTGAAAATGGTGGGAGCAGACCGACACTCTTGGAAACAACAACCGTACGGTCGGACACCGCGATACACTCCGTATTATTACCCAACGCCATACGGGTATAATCAACCATTTGTGAATAATGCAACTTCACATTACTCCCCTTATGCTTACCAAAATTTTCGACCCCCAGCCAGTCATAATTTCCAACCTAGGAGTCAGCAGCATAATACATTCTATACTCAAGGGCAGCAGAATAATAGAGGGGCACATAAACAGACCCAGTTTGACCCAATCCCCATGACTTATACTGAGCTTCTGCCTTAG

mRNA sequence

ATGATGCCACCCCCTACAGTCCTTAATCTAGGTGGTCTCCCAGCCAAGACAGACCCAGTCGGACAAAATGCCCCTAGTAACGAGAAGTTTGAAGTTCTGGAGGAAAGATTAAGAGCAATAGAGGGGACAGACGTTTTTGGCAACATCGATGCCTCACAATTGTTTTTGGTGTCTGGATTAGTCATCCCTCCAAAATTCAAGGTGCCAGAGTTTGAGAAGTACGATGGTTCTTCTTGTCCTAAGAATCATCTTATAATGTACTGTAGGAAGATGGCAGCGTACGTCCAAAATGACAAATTGTTGATACACTGCTTCCAAGATAGTTTATCTGGTCCGGCCTCTCATTGGTACATGCAGTTAGATAGCTCTCATTTTGGCTCGTGGAAGAATCTGGCCGACTCCTTCCTAAAACAATATAAGCATAACATAGATATGGCTCCAGATCGCTTAGATTTACAGAGGATGGAGAAGAAGAGTACAAAGAGCTTTAAGGAGTATGCTCAAAGGTGGAGGGACACGGCACCTCAAGTCCAACCTCCTTTAACAGATAAGGAGCTATCTGCCATGTTCATCAATACCCTAAAACATCATTTCTATGATCGGATGATAGGAAGCGCTTCCACAAATTTATTTGATATTATGACCATCGGAGAAAGGATCAAATATGGGGTTAGACATGGGCGAATAACCAGTATTGCCGATGAGCCATTGGCCGCAAAGAAGGCAAGTCATTCCAAGAAGAAGGAAGGTGAGGTGAAAATGGTGGGAGCAGACCGACACTCTTGGAAACAACAACCGTACGGTCGGACACCGCGATACACTCCGTATTATTACCCAACGCCATACGGGTATAATCAACCATTTGTGAATAATGCAACTTCACATTACTCCCCTTATGCTTACCAAAATTTTCGACCCCCAGCCAGTCATAATTTCCAACCTAGGAGTCAGCAGCATAATACATTCTATACTCAAGGGCAGCAGAATAATAGAGGGGCACATAAACAGACCCAGTTTGACCCAATCCCCATGACTTATACTGAGCTTCTGCCTTAG

Coding sequence (CDS)

ATGATGCCACCCCCTACAGTCCTTAATCTAGGTGGTCTCCCAGCCAAGACAGACCCAGTCGGACAAAATGCCCCTAGTAACGAGAAGTTTGAAGTTCTGGAGGAAAGATTAAGAGCAATAGAGGGGACAGACGTTTTTGGCAACATCGATGCCTCACAATTGTTTTTGGTGTCTGGATTAGTCATCCCTCCAAAATTCAAGGTGCCAGAGTTTGAGAAGTACGATGGTTCTTCTTGTCCTAAGAATCATCTTATAATGTACTGTAGGAAGATGGCAGCGTACGTCCAAAATGACAAATTGTTGATACACTGCTTCCAAGATAGTTTATCTGGTCCGGCCTCTCATTGGTACATGCAGTTAGATAGCTCTCATTTTGGCTCGTGGAAGAATCTGGCCGACTCCTTCCTAAAACAATATAAGCATAACATAGATATGGCTCCAGATCGCTTAGATTTACAGAGGATGGAGAAGAAGAGTACAAAGAGCTTTAAGGAGTATGCTCAAAGGTGGAGGGACACGGCACCTCAAGTCCAACCTCCTTTAACAGATAAGGAGCTATCTGCCATGTTCATCAATACCCTAAAACATCATTTCTATGATCGGATGATAGGAAGCGCTTCCACAAATTTATTTGATATTATGACCATCGGAGAAAGGATCAAATATGGGGTTAGACATGGGCGAATAACCAGTATTGCCGATGAGCCATTGGCCGCAAAGAAGGCAAGTCATTCCAAGAAGAAGGAAGGTGAGGTGAAAATGGTGGGAGCAGACCGACACTCTTGGAAACAACAACCGTACGGTCGGACACCGCGATACACTCCGTATTATTACCCAACGCCATACGGGTATAATCAACCATTTGTGAATAATGCAACTTCACATTACTCCCCTTATGCTTACCAAAATTTTCGACCCCCAGCCAGTCATAATTTCCAACCTAGGAGTCAGCAGCATAATACATTCTATACTCAAGGGCAGCAGAATAATAGAGGGGCACATAAACAGACCCAGTTTGACCCAATCCCCATGACTTATACTGAGCTTCTGCCTTAG

Protein sequence

MMPPPTVLNLGGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGLVIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQLDSSHFGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPPLTDKELSAMFINTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAKKASHSKKKEGEVKMVGADRHSWKQQPYGRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYAYQNFRPPASHNFQPRSQQHNTFYTQGQQNNRGAHKQTQFDPIPMTYTELLP

Homology

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BLAST of Moc09g31390 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 655.6 bits (1690), Expect = 2.4e-184
Identity = 325/360 (90.28%), Postives = 331/360 (91.94%), Query Frame = 0


Query: 1   MMPPPTVLNLGGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGL 60
           MM PPTVLNLGGLPAKTD VGQNAPSNEKFEVLEERLRAIEGT VFGNIDASQL LVSGL
Sbjct: 1   MMSPPTVLNLGGLPAKTDLVGQNAPSNEKFEVLEERLRAIEGTYVFGNIDASQLCLVSGL 60

Query: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQL 120
           VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPAS WYMQL
Sbjct: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQL 120

Query: 121 DSSHFGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPP 180
           DSS+ GSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKST+SFKEYAQRWRDTA QVQPP
Sbjct: 121 DSSNVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPP 180

Query: 181 LTDKELSAMFINTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAK 240
           LTDKELSAMFINTLKH FYDRMIG+ASTN  DIMTIGERI+YGVRHGRITS  DEPLAAK
Sbjct: 181 LTDKELSAMFINTLKHPFYDRMIGNASTNFSDIMTIGERIEYGVRHGRITSTVDEPLAAK 240

Query: 241 KASHSKKKEGEVKMVGADRHSWKQQPYGRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYA 300
           KASHSKKKEGEV+MVGADRHSWKQQPY RTPRYTPYYYPTPYGYNQPFVNNATSHYSPY 
Sbjct: 241 KASHSKKKEGEVQMVGADRHSWKQQPYSRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYT 300

Query: 301 YQNFRP---------PASHNFQPRSQQHNTFYTQGQQNNRGAHKQTQFDPIPMTYTELLP 352
           +QNFRP         PAS NFQPR QQHNT YTQ QQ NRGA KQTQFDPIPMTYTELLP
Sbjct: 301 FQNFRPPASQNFQPTPASQNFQPRGQQHNTLYTQEQQTNRGARKQTQFDPIPMTYTELLP 360

[Close]

BLAST of Moc09g31390 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 647.5 bits (1669), Expect = 6.6e-182
Identity = 322/360 (89.44%), Postives = 328/360 (91.11%), Query Frame = 0


Query: 1   MMPPPTVLNLGGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGL 60
           MM PPTVLNLG L AKTDPVGQNAPSNEKFEVL+ERLRAIE TDVFGNIDASQL  VSGL
Sbjct: 41  MMSPPTVLNLGDLLAKTDPVGQNAPSNEKFEVLKERLRAIERTDVFGNIDASQLCSVSGL 100

Query: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQL 120
           VIPPK KVPEFEKY+GSSCPKNHL MYCRKMAAYVQNDKLLIHCFQDSLSGPAS WYMQL
Sbjct: 101 VIPPKLKVPEFEKYNGSSCPKNHLXMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQL 160

Query: 121 DSSHFGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPP 180
           DSSH GSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTA QVQPP
Sbjct: 161 DSSHVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAAQVQPP 220

Query: 181 LTDKELSAMFINTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAK 240
           L DKELSAMFINTLKH FYDRMIGSASTN  DIMTIGERI+YGVRHGRITS  DEPLAAK
Sbjct: 221 LIDKELSAMFINTLKHPFYDRMIGSASTNFSDIMTIGERIEYGVRHGRITSTTDEPLAAK 280

Query: 241 KASHSKKKEGEVKMVGADRHSWKQQPYGRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYA 300
           KASHSKKKEGEV+MVGADRHSWKQQPY RTP+Y+PYYYPTPYGYNQPFVNNATSHY PYA
Sbjct: 281 KASHSKKKEGEVQMVGADRHSWKQQPYRRTPQYSPYYYPTPYGYNQPFVNNATSHYYPYA 340

Query: 301 YQNFRPPA---------SHNFQPRSQQHNTFYTQGQQNNRGAHKQTQFDPIPMTYTELLP 352
            QNFRPPA         S NFQPR QQHNTFYTQGQQNNRGA KQTQFDPIPMTYTELLP
Sbjct: 341 SQNFRPPASQNFQLTPTSQNFQPRGQQHNTFYTQGQQNNRGARKQTQFDPIPMTYTELLP 400

[Close]

BLAST of Moc09g31390 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 550.8 bits (1418), Expect = 8.4e-153
Identity = 271/351 (77.21%), Postives = 292/351 (83.19%), Query Frame = 0


Query: 1   MMPPPTVLNLGGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGL 60
           ++ PPTVLNLGG  A  DP  Q APS+EK EVLEERLRA+EGTDVFGNIDASQL L SGL
Sbjct: 114 VIAPPTVLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGL 173

Query: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQL 120
           VIPPKFK+PEFEKY+GSSCPKNHLIMYCRKMAAY+QNDKLLIHCFQDSLSGP S WYM L
Sbjct: 174 VIPPKFKIPEFEKYBGSSCPKNHLIMYCRKMAAYIQNDKLLIHCFQDSLSGPXSXWYMHL 233

Query: 121 DSSHFGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPP 180
           DS H  SWKNLADSFLKQYKHNIDM  DRLDLQ MEKK+ +SFKEY QRWRDTA Q QPP
Sbjct: 234 DSXHVXSWKNLADSFLKQYKHNIDMXXDRLDLQXMEKKTXESFKEYXQRWRDTAAQXQPP 293

Query: 181 LTDKELSAMFINTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAK 240
            TDKELS+MFINTLKH FYDRMIGSAST+  DI+TIGERI+YGV HGRITS   E    K
Sbjct: 294 XTDKELSSMFINTLKHPFYDRMIGSASTSFSDILTIGERIEYGVXHGRITSTVGESSTXK 353

Query: 241 KASHSKKKEGEVKMVGADRHSWKQQPYGRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYA 300
             + SKKKEGEV+MVGADRH W+Q PYG+T  Y PYYYP+PYGYNQP+VN AT  Y+  A
Sbjct: 354 XXTSSKKKEGEVQMVGADRHVWRQPPYGKTXXYAPYYYPSPYGYNQPYVNXATFQYT--A 413

Query: 301 YQNFRPPASHNFQPRSQQHNTFYTQGQQNNRGAHKQTQFDPIPMTYTELLP 352
            QNFRPPAS  FQPR  Q NT YTQGQQNNR   KQ+QFDPIPMTYTELLP
Sbjct: 414 SQNFRPPASQGFQPRGYQQNTVYTQGQQNNRSTRKQSQFDPIPMTYTELLP 462

[Close]

BLAST of Moc09g31390 vs. NCBI nr
Match: XP_022157796.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia])

HSP 1 Score: 461.1 bits (1185), Expect = 8.7e-126
Identity = 230/258 (89.15%), Postives = 233/258 (90.31%), Query Frame = 0


Query: 1   MMPPPTVLNLGGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGL 60
           MM PPTV NLGG PAKTDPV QNA S EK EVLEERLRAIEGTDVFGNIDASQL LVSGL
Sbjct: 110 MMSPPTVXNLGGXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGL 169

Query: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQL 120
           VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM AYVQN KLLIHCFQDSL G AS WYMQL
Sbjct: 170 VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMXAYVQNXKLLIHCFQDSLXGXASRWYMQL 229

Query: 121 DSSHFGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPP 180
           DSSH GSWKNLADSFLKQYKHNIDMAPDRLDLQRMEK ST+SFKEYAQRWRDTA QVQPP
Sbjct: 230 DSSHVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKNSTESFKEYAQRWRDTAAQVQPP 289

Query: 181 LTDKELSAMFINTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAK 240
           LTDKELSAMFINTLKH FYDRMIGSASTN  DIMTIGERI+YGVRH RITS ADEPLAAK
Sbjct: 290 LTDKELSAMFINTLKHPFYDRMIGSASTNFSDIMTIGERIEYGVRHKRITSTADEPLAAK 349

Query: 241 KASHSKKKEGEVKMVGAD 259
           KASHSKKKEGE+  V  D
Sbjct: 350 KASHSKKKEGELTPVPVD 367

[Close]

BLAST of Moc09g31390 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 461.1 bits (1185), Expect = 8.7e-126
Identity = 230/259 (88.80%), Postives = 235/259 (90.73%), Query Frame = 0


Query: 11  GGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGLVIPPKFKVPE 70
           GGLPAKTDPVGQNAPSNEKFEVL+ERLRAIEGTDVFGNIDASQL LVS LVIPPKFKVPE
Sbjct: 62  GGLPAKTDPVGQNAPSNEKFEVLKERLRAIEGTDVFGNIDASQLCLVSRLVIPPKFKVPE 121

Query: 71  FEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQLDSSHFGSWKN 130
           FEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLS PAS WYMQLDSSH GSWKN
Sbjct: 122 FEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSSPASRWYMQLDSSHVGSWKN 181

Query: 131 LADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPPLTDKELSAMF 190
           LADSFLKQYKHNIDMAPDRLDLQRMEKKST+SFKEYAQRWRDTA QVQPPLTDKELS MF
Sbjct: 182 LADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLTDKELSXMF 241

Query: 191 INTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAKKASHSKKKEG 250
           INTLKH FYDRM+GSASTN  DIM IGERI+YGVRHGRITS ADEPLAAKK SHSKKKEG
Sbjct: 242 INTLKHPFYDRMVGSASTNFSDIMAIGERIEYGVRHGRITSTADEPLAAKKTSHSKKKEG 301

Query: 251 EVKMVGADRHSWKQQPYGR 270
           E+  V  D     Q PY R
Sbjct: 302 ELAHVPVDP---IQPPYPR 317

[Close]

BLAST of Moc09g31390 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 655.6 bits (1690), Expect = 1.2e-184
Identity = 325/360 (90.28%), Postives = 331/360 (91.94%), Query Frame = 0


Query: 1   MMPPPTVLNLGGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGL 60
           MM PPTVLNLGGLPAKTD VGQNAPSNEKFEVLEERLRAIEGT VFGNIDASQL LVSGL
Sbjct: 1   MMSPPTVLNLGGLPAKTDLVGQNAPSNEKFEVLEERLRAIEGTYVFGNIDASQLCLVSGL 60

Query: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQL 120
           VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPAS WYMQL
Sbjct: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQL 120

Query: 121 DSSHFGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPP 180
           DSS+ GSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKST+SFKEYAQRWRDTA QVQPP
Sbjct: 121 DSSNVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPP 180

Query: 181 LTDKELSAMFINTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAK 240
           LTDKELSAMFINTLKH FYDRMIG+ASTN  DIMTIGERI+YGVRHGRITS  DEPLAAK
Sbjct: 181 LTDKELSAMFINTLKHPFYDRMIGNASTNFSDIMTIGERIEYGVRHGRITSTVDEPLAAK 240

Query: 241 KASHSKKKEGEVKMVGADRHSWKQQPYGRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYA 300
           KASHSKKKEGEV+MVGADRHSWKQQPY RTPRYTPYYYPTPYGYNQPFVNNATSHYSPY 
Sbjct: 241 KASHSKKKEGEVQMVGADRHSWKQQPYSRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYT 300

Query: 301 YQNFRP---------PASHNFQPRSQQHNTFYTQGQQNNRGAHKQTQFDPIPMTYTELLP 352
           +QNFRP         PAS NFQPR QQHNT YTQ QQ NRGA KQTQFDPIPMTYTELLP
Sbjct: 301 FQNFRPPASQNFQPTPASQNFQPRGQQHNTLYTQEQQTNRGARKQTQFDPIPMTYTELLP 360

[Close]

BLAST of Moc09g31390 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 647.5 bits (1669), Expect = 3.2e-182
Identity = 322/360 (89.44%), Postives = 328/360 (91.11%), Query Frame = 0


Query: 1   MMPPPTVLNLGGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGL 60
           MM PPTVLNLG L AKTDPVGQNAPSNEKFEVL+ERLRAIE TDVFGNIDASQL  VSGL
Sbjct: 41  MMSPPTVLNLGDLLAKTDPVGQNAPSNEKFEVLKERLRAIERTDVFGNIDASQLCSVSGL 100

Query: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQL 120
           VIPPK KVPEFEKY+GSSCPKNHL MYCRKMAAYVQNDKLLIHCFQDSLSGPAS WYMQL
Sbjct: 101 VIPPKLKVPEFEKYNGSSCPKNHLXMYCRKMAAYVQNDKLLIHCFQDSLSGPASRWYMQL 160

Query: 121 DSSHFGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPP 180
           DSSH GSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTA QVQPP
Sbjct: 161 DSSHVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAAQVQPP 220

Query: 181 LTDKELSAMFINTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAK 240
           L DKELSAMFINTLKH FYDRMIGSASTN  DIMTIGERI+YGVRHGRITS  DEPLAAK
Sbjct: 221 LIDKELSAMFINTLKHPFYDRMIGSASTNFSDIMTIGERIEYGVRHGRITSTTDEPLAAK 280

Query: 241 KASHSKKKEGEVKMVGADRHSWKQQPYGRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYA 300
           KASHSKKKEGEV+MVGADRHSWKQQPY RTP+Y+PYYYPTPYGYNQPFVNNATSHY PYA
Sbjct: 281 KASHSKKKEGEVQMVGADRHSWKQQPYRRTPQYSPYYYPTPYGYNQPFVNNATSHYYPYA 340

Query: 301 YQNFRPPA---------SHNFQPRSQQHNTFYTQGQQNNRGAHKQTQFDPIPMTYTELLP 352
            QNFRPPA         S NFQPR QQHNTFYTQGQQNNRGA KQTQFDPIPMTYTELLP
Sbjct: 341 SQNFRPPASQNFQLTPTSQNFQPRGQQHNTFYTQGQQNNRGARKQTQFDPIPMTYTELLP 400

[Close]

BLAST of Moc09g31390 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.4e-153
Identity = 272/351 (77.49%), Postives = 292/351 (83.19%), Query Frame = 0


Query: 1   MMPPPTVLNLGGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGL 60
           ++ PPTVLNLGG  A  DP  Q APS+EK EVLEERLRA+EGTDVFGNIDASQL L SGL
Sbjct: 114 VIAPPTVLNLGGPQANKDPERQEAPSSEKLEVLEERLRAVEGTDVFGNIDASQLCLXSGL 173

Query: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQL 120
           VIPPKFK+PEFEKYDGSSCPKNHLIMYCRKMAAY+QNDKLLIHCFQDSLSGP S WYM L
Sbjct: 174 VIPPKFKIPEFEKYDGSSCPKNHLIMYCRKMAAYIQNDKLLIHCFQDSLSGPXSXWYMHL 233

Query: 121 DSSHFGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPP 180
           DS H  SWKNLADSFLKQYKHNIDM  DRLDLQ MEKK+ +SFKEY QRWRDTA Q QPP
Sbjct: 234 DSXHVXSWKNLADSFLKQYKHNIDMXXDRLDLQXMEKKTXESFKEYXQRWRDTAAQXQPP 293

Query: 181 LTDKELSAMFINTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAK 240
            TDKELS+MFINTLKH FYDRMIGSAST+  DI+TIGERI+YGV HGRITS   E    K
Sbjct: 294 XTDKELSSMFINTLKHPFYDRMIGSASTSFSDILTIGERIEYGVXHGRITSTVGESSTXK 353

Query: 241 KASHSKKKEGEVKMVGADRHSWKQQPYGRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYA 300
             + SKKKEGEV+MVGADRH W+Q PYG+T  Y PYYYP+PYGYNQP+VN AT  Y+  A
Sbjct: 354 XXTSSKKKEGEVQMVGADRHVWRQPPYGKTXXYAPYYYPSPYGYNQPYVNXATFQYT--A 413

Query: 301 YQNFRPPASHNFQPRSQQHNTFYTQGQQNNRGAHKQTQFDPIPMTYTELLP 352
            QNFRPPAS  FQPR  Q NT YTQGQQNNR   KQ+QFDPIPMTYTELLP
Sbjct: 414 SQNFRPPASQGFQPRGYQQNTVYTQGQQNNRSTRKQSQFDPIPMTYTELLP 462

[Close]

BLAST of Moc09g31390 vs. ExPASy TrEMBL
Match: A0A6J1CNY7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 4.2e-126
Identity = 230/259 (88.80%), Postives = 235/259 (90.73%), Query Frame = 0


Query: 11  GGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGLVIPPKFKVPE 70
           GGLPAKTDPVGQNAPSNEKFEVL+ERLRAIEGTDVFGNIDASQL LVS LVIPPKFKVPE
Sbjct: 62  GGLPAKTDPVGQNAPSNEKFEVLKERLRAIEGTDVFGNIDASQLCLVSRLVIPPKFKVPE 121

Query: 71  FEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQLDSSHFGSWKN 130
           FEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLS PAS WYMQLDSSH GSWKN
Sbjct: 122 FEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSSPASRWYMQLDSSHVGSWKN 181

Query: 131 LADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPPLTDKELSAMF 190
           LADSFLKQYKHNIDMAPDRLDLQRMEKKST+SFKEYAQRWRDTA QVQPPLTDKELS MF
Sbjct: 182 LADSFLKQYKHNIDMAPDRLDLQRMEKKSTESFKEYAQRWRDTAAQVQPPLTDKELSXMF 241

Query: 191 INTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAKKASHSKKKEG 250
           INTLKH FYDRM+GSASTN  DIM IGERI+YGVRHGRITS ADEPLAAKK SHSKKKEG
Sbjct: 242 INTLKHPFYDRMVGSASTNFSDIMAIGERIEYGVRHGRITSTADEPLAAKKTSHSKKKEG 301

Query: 251 EVKMVGADRHSWKQQPYGR 270
           E+  V  D     Q PY R
Sbjct: 302 ELAHVPVDP---IQPPYPR 317

[Close]

BLAST of Moc09g31390 vs. ExPASy TrEMBL
Match: A0A6J1DZ90 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 4.2e-126
Identity = 230/258 (89.15%), Postives = 233/258 (90.31%), Query Frame = 0


Query: 1   MMPPPTVLNLGGLPAKTDPVGQNAPSNEKFEVLEERLRAIEGTDVFGNIDASQLFLVSGL 60
           MM PPTV NLGG PAKTDPV QNA S EK EVLEERLRAIEGTDVFGNIDASQL LVSGL
Sbjct: 110 MMSPPTVXNLGGXPAKTDPVXQNAXSXEKXEVLEERLRAIEGTDVFGNIDASQLCLVSGL 169

Query: 61  VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMAAYVQNDKLLIHCFQDSLSGPASHWYMQL 120
           VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKM AYVQN KLLIHCFQDSL G AS WYMQL
Sbjct: 170 VIPPKFKVPEFEKYDGSSCPKNHLIMYCRKMXAYVQNXKLLIHCFQDSLXGXASRWYMQL 229

Query: 121 DSSHFGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKKSTKSFKEYAQRWRDTAPQVQPP 180
           DSSH GSWKNLADSFLKQYKHNIDMAPDRLDLQRMEK ST+SFKEYAQRWRDTA QVQPP
Sbjct: 230 DSSHVGSWKNLADSFLKQYKHNIDMAPDRLDLQRMEKNSTESFKEYAQRWRDTAAQVQPP 289

Query: 181 LTDKELSAMFINTLKHHFYDRMIGSASTNLFDIMTIGERIKYGVRHGRITSIADEPLAAK 240
           LTDKELSAMFINTLKH FYDRMIGSASTN  DIMTIGERI+YGVRH RITS ADEPLAAK
Sbjct: 290 LTDKELSAMFINTLKHPFYDRMIGSASTNFSDIMTIGERIEYGVRHKRITSTADEPLAAK 349

Query: 241 KASHSKKKEGEVKMVGAD 259
           KASHSKKKEGE+  V  D
Sbjct: 350 KASHSKKKEGELTPVPVD 367

The following BLAST results are available for this feature:

BLAST of Moc09g31390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158986.1	2.4e-184	90.28	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
XP_022147189.1	6.6e-182	89.44	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]
XP_022155098.1	8.4e-153	77.21	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_022157796.1	8.7e-126	89.15	LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]	[more]
XP_022143495.1	8.7e-126	88.80	LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]	[more]

BLAST of Moc09g31390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g31390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2J7	1.2e-184	90.28	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A6J1D099	3.2e-182	89.44	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A6J1DM29	2.4e-153	77.49	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A6J1CNY7	4.2e-126	88.80	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111013372 PE=4 SV=1	[more]
A0A6J1DZ90	4.2e-126	89.15	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111024415 PE=4 SV=1	[more]

BLAST of Moc09g31390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 108..195 e-value: 7.7E-12 score: 45.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR34491:SF19	GAG-PRO-LIKE PROTEIN	coord: 27..217
None	No IPR available	PANTHER	PTHR34491	A-TYPE INCLUSION PROTEIN, PUTATIVE-RELATED	coord: 27..217

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g31390.1	Moc09g31390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity