Moc09g31060 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g31060
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr9: 23452740 .. 23453472 (-)
RNA-Seq Expression	Moc09g31060
Synteny	Moc09g31060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCCACGCTGACCTTGACGTGATGATGTGTAGGGCGTTATCTGTGACCATAGGGGTCCGCGAAGAAATGGAACGTGCAACTCACGCCCCACTCCATTTCCTCCTAAAAGCAACTCCACAAGGCCTTCGTGGCCTAGTTTGCGGCACAATGGGAGACTCAACACTCAGCCCAGTATTTGCTCGCGATAAGGCAGAAGGCAGGGGAAAGCATGAGGGACTACGTAAGGAGGTTCCTCGCTGCGTAGATCACGGTAACTTACAAGGAGGAGTTCGCATGCTCGGTGTTCGCCTCGGGGGTTCGACACGAGCAGCTGAAGTGGTCACTCGCCAAGAAACCTGAGCTCACCATCAAGGCCAGCATAGAGCGAGCTAGGAAGTTCATATAGGCAAATGAGCTTATTCAATAAAGGGAGGAGCCGCCGAGGACCAGCTCCGCAAATGAGAGGCGAGGTCGGGATGGCTCTCAGAGGTCACCACAGCGACAGCGGTAATACGACTGCAACTCTCGACAGAAGCAGGACCTGAAGTGCGGACGACCTGAAAGGTATGACCGCTTTACACTTTTGAACGAGCCGATGGCTGAAATTCTCGCCAACATACAAGACTTGAAGCTCGACCTACTCATTGAGCCTAACCTTAGGCGTCGAGACCCCGAGAAGCGCAACCGATCAAAGTTCTACCATTTCCACAAGGACCACGACCATAACACCTCCGACTGCCACACCTGA

mRNA sequence

ATGGATTTCCACGCTGACCTTGACGTGATGATGTGTAGGGCGTTATCTGTGACCATAGGGGTCCGCGAAGAAATGGAACGTGCAACTCACGCCCCACTCCATTTCCTCCTAAAAGCAACTCCACAAGGCCTTCGTGGCCTAGTTTGCGGCACAATGGGAGACTCAACACTCAGCCCAGTATTTGCTCGCGATAAGGCAGAAGGCAGGGGAAAGCATGAGGGACTACGTAAGGAGGTTCCTCGCTGCGTAGATCACGGTAACTTACAAGGAGGAGTTCGCATGCTCGGTGTTCGCCTCGGGGGTTCGACACGAGCAGCTGAAGTGAAGCAGGACCTGAAGTGCGGACGACCTGAAAGGTATGACCGCTTTACACTTTTGAACGAGCCGATGGCTGAAATTCTCGCCAACATACAAGACTTGAAGCTCGACCTACTCATTGAGCCTAACCTTAGGCGTCGAGACCCCGAGAAGCGCAACCGATCAAAGTTCTACCATTTCCACAAGGACCACGACCATAACACCTCCGACTGCCACACCTGA

Coding sequence (CDS)

ATGGATTTCCACGCTGACCTTGACGTGATGATGTGTAGGGCGTTATCTGTGACCATAGGGGTCCGCGAAGAAATGGAACGTGCAACTCACGCCCCACTCCATTTCCTCCTAAAAGCAACTCCACAAGGCCTTCGTGGCCTAGTTTGCGGCACAATGGGAGACTCAACACTCAGCCCAGTATTTGCTCGCGATAAGGCAGAAGGCAGGGGAAAGCATGAGGGACTACGTAAGGAGGTTCCTCGCTGCGTAGATCACGGTAACTTACAAGGAGGAGTTCGCATGCTCGGTGTTCGCCTCGGGGGTTCGACACGAGCAGCTGAAGTGAAGCAGGACCTGAAGTGCGGACGACCTGAAAGGTATGACCGCTTTACACTTTTGAACGAGCCGATGGCTGAAATTCTCGCCAACATACAAGACTTGAAGCTCGACCTACTCATTGAGCCTAACCTTAGGCGTCGAGACCCCGAGAAGCGCAACCGATCAAAGTTCTACCATTTCCACAAGGACCACGACCATAACACCTCCGACTGCCACACCTGA

Protein sequence

MDFHADLDVMMCRALSVTIGVREEMERATHAPLHFLLKATPQGLRGLVCGTMGDSTLSPVFARDKAEGRGKHEGLRKEVPRCVDHGNLQGGVRMLGVRLGGSTRAAEVKQDLKCGRPERYDRFTLLNEPMAEILANIQDLKLDLLIEPNLRRRDPEKRNRSKFYHFHKDHDHNTSDCHT

Homology

[Close]

BLAST of Moc09g31060 vs. NCBI nr
Match: XP_022158651.1 (uncharacterized protein LOC111025110 [Momordica charantia])

HSP 1 Score: 98.6 bits (244), Expect = 5.8e-17
Identity = 50/75 (66.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 104 RAAEVKQDLKCGRPERYDRFTLLNEPMAEILANIQDLKLDLLIEPNLRRRDPEKRNRSKF 163
           R +  KQ  K GRPERYDRFT LN  +A+I ANIQD KL+LL EPN   RDPEK NR KF
Sbjct: 142 RNSRPKQKQKYGRPERYDRFTPLNVSVAKIFANIQDSKLNLLTEPNPMSRDPEKHNRLKF 201

Query: 164 YHFHKDHDHNTSDCH 179
            HFHKDH H+TSDC+
Sbjct: 202 CHFHKDHGHDTSDCY 216

[Close]

BLAST of Moc09g31060 vs. NCBI nr
Match: XP_022159035.1 (uncharacterized protein LOC111025477 [Momordica charantia])

HSP 1 Score: 67.4 bits (163), Expect = 1.4e-07
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 130 MAEILANIQDLKLDLLIEPNLRRRDPEKRNRSKFYHFHKDHDHNTSDCH 179
           MAEI ANI++ KLDLL EPN   RD EKR++SKFYHFHKDH H+ SDC+
Sbjct: 1   MAEIPANIKNSKLDLLTEPNPIGRDLEKRSQSKFYHFHKDHSHDISDCY 49

[Close]

BLAST of Moc09g31060 vs. NCBI nr
Match: XP_022158214.1 (uncharacterized protein LOC111024750 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 1.6e-06
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 102 STRAAEVKQDLKCGRPERYDRFTLLNEPMAEILANIQDLKLD-LLIEPNLRRRDPEKRNR 161
           S RA   + D    R   Y+R+T    P++EIL NI+D  ++ LL  P     DPEKRN+
Sbjct: 173 SNRADYRRLDSGHNRSRLYERYTPTTIPISEILTNIEDTGMEKLLKRPEKLIGDPEKRNK 232

Query: 162 SKFYHFHKDHDHNTSDC 178
            K+  FH+DHDHNTS C
Sbjct: 233 DKYCRFHRDHDHNTSSC 249

[Close]

BLAST of Moc09g31060 vs. NCBI nr
Match: XP_022159079.1 (uncharacterized protein LOC111025521 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-06
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 102 STRAAEVKQDLKCGRPERYDRFTLLNEPMAEILANIQDLKLD-LLIEPNLRRRDPEKRNR 161
           S++A   + D    R   Y+R+T    P +EIL NI++  ++ LL  P   R DPEKRN+
Sbjct: 170 SSQADYRRSDSSRNRSRPYERYTPTTIPSSEILTNIEETGMEKLLKRPKKLRGDPEKRNK 229

Query: 162 SKFYHFHKDHDHNTSDC 178
            K+  FH+DH HNTS+C
Sbjct: 230 DKYCRFHRDHGHNTSNC 246

[Close]

BLAST of Moc09g31060 vs. NCBI nr
Match: XP_022149419.1 (uncharacterized protein LOC111017849 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 4.6e-06
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 68  GRGKH-EGLRKEVPRCVDHGNLQGGVRMLGVRLGGSTRAAEVKQDLKCGRPERYDRFTLL 127
           GRG+  + + K  P+  D G+   G         G TR+          RP  Y+RFT +
Sbjct: 149 GRGRSGKDIEKADPKSKDKGSFSSGRAEYRRAENGPTRS----------RP--YERFTPI 208

Query: 128 NEPMAEILANIQDLKLD-LLIEPNLRRRDPEKRNRSKFYHFHKDHDHNTSDC 178
             P++EIL NI++  ++ LL  P   R  PE+R++ K+  FH++HDHNTSDC
Sbjct: 209 TIPISEILTNIEESGMEKLLKRPEKLRGAPERRSKDKYCRFHREHDHNTSDC 248

[Close]

BLAST of Moc09g31060 vs. ExPASy TrEMBL
Match: A0A6J1E1K0 (uncharacterized protein LOC111025110 OS=Momordica charantia OX=3673 GN=LOC111025110 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.8e-17
Identity = 50/75 (66.67%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 104 RAAEVKQDLKCGRPERYDRFTLLNEPMAEILANIQDLKLDLLIEPNLRRRDPEKRNRSKF 163
           R +  KQ  K GRPERYDRFT LN  +A+I ANIQD KL+LL EPN   RDPEK NR KF
Sbjct: 142 RNSRPKQKQKYGRPERYDRFTPLNVSVAKIFANIQDSKLNLLTEPNPMSRDPEKHNRLKF 201

Query: 164 YHFHKDHDHNTSDCH 179
            HFHKDH H+TSDC+
Sbjct: 202 CHFHKDHGHDTSDCY 216

[Close]

BLAST of Moc09g31060 vs. ExPASy TrEMBL
Match: A0A6J1DXI1 (uncharacterized protein LOC111025477 OS=Momordica charantia OX=3673 GN=LOC111025477 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.9e-08
Identity = 34/49 (69.39%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 130 MAEILANIQDLKLDLLIEPNLRRRDPEKRNRSKFYHFHKDHDHNTSDCH 179
           MAEI ANI++ KLDLL EPN   RD EKR++SKFYHFHKDH H+ SDC+
Sbjct: 1   MAEIPANIKNSKLDLLTEPNPIGRDLEKRSQSKFYHFHKDHSHDISDCY 49

[Close]

BLAST of Moc09g31060 vs. ExPASy TrEMBL
Match: A0A6J1DYR2 (uncharacterized protein LOC111024750 OS=Momordica charantia OX=3673 GN=LOC111024750 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.7e-07
Identity = 35/77 (45.45%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 102 STRAAEVKQDLKCGRPERYDRFTLLNEPMAEILANIQDLKLD-LLIEPNLRRRDPEKRNR 161
           S RA   + D    R   Y+R+T    P++EIL NI+D  ++ LL  P     DPEKRN+
Sbjct: 173 SNRADYRRLDSGHNRSRLYERYTPTTIPISEILTNIEDTGMEKLLKRPEKLIGDPEKRNK 232

Query: 162 SKFYHFHKDHDHNTSDC 178
            K+  FH+DHDHNTS C
Sbjct: 233 DKYCRFHRDHDHNTSSC 249

[Close]

BLAST of Moc09g31060 vs. ExPASy TrEMBL
Match: A0A6J1E1B3 (uncharacterized protein LOC111025521 OS=Momordica charantia OX=3673 GN=LOC111025521 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.7e-06
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 102 STRAAEVKQDLKCGRPERYDRFTLLNEPMAEILANIQDLKLD-LLIEPNLRRRDPEKRNR 161
           S++A   + D    R   Y+R+T    P +EIL NI++  ++ LL  P   R DPEKRN+
Sbjct: 170 SSQADYRRSDSSRNRSRPYERYTPTTIPSSEILTNIEETGMEKLLKRPKKLRGDPEKRNK 229

Query: 162 SKFYHFHKDHDHNTSDC 178
            K+  FH+DH HNTS+C
Sbjct: 230 DKYCRFHRDHGHNTSNC 246

[Close]

BLAST of Moc09g31060 vs. ExPASy TrEMBL
Match: A0A6J1D701 (uncharacterized protein LOC111017849 OS=Momordica charantia OX=3673 GN=LOC111017849 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.2e-06
Identity = 41/112 (36.61%), Postives = 61/112 (54.46%), Query Frame = 0


Query: 68  GRGKH-EGLRKEVPRCVDHGNLQGGVRMLGVRLGGSTRAAEVKQDLKCGRPERYDRFTLL 127
           GRG+  + + K  P+  D G+   G         G TR+          RP  Y+RFT +
Sbjct: 149 GRGRSGKDIEKADPKSKDKGSFSSGRAEYRRAENGPTRS----------RP--YERFTPI 208

Query: 128 NEPMAEILANIQDLKLD-LLIEPNLRRRDPEKRNRSKFYHFHKDHDHNTSDC 178
             P++EIL NI++  ++ LL  P   R  PE+R++ K+  FH++HDHNTSDC
Sbjct: 209 TIPISEILTNIEESGMEKLLKRPEKLRGAPERRSKDKYCRFHREHDHNTSDC 248

The following BLAST results are available for this feature:

BLAST of Moc09g31060 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158651.1	5.8e-17	66.67	uncharacterized protein LOC111025110 [Momordica charantia]	[more]
XP_022159035.1	1.4e-07	69.39	uncharacterized protein LOC111025477 [Momordica charantia]	[more]
XP_022158214.1	1.6e-06	45.45	uncharacterized protein LOC111024750 [Momordica charantia]	[more]
XP_022159079.1	3.5e-06	42.86	uncharacterized protein LOC111025521 [Momordica charantia]	[more]
XP_022149419.1	4.6e-06	36.61	uncharacterized protein LOC111017849 [Momordica charantia]	[more]

BLAST of Moc09g31060 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g31060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E1K0	2.8e-17	66.67	uncharacterized protein LOC111025110 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DXI1	6.9e-08	69.39	uncharacterized protein LOC111025477 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DYR2	7.7e-07	45.45	uncharacterized protein LOC111024750 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1E1B3	1.7e-06	42.86	uncharacterized protein LOC111025521 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1D701	2.2e-06	36.61	uncharacterized protein LOC111017849 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Moc09g31060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..179

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g31060.1	Moc09g31060.1	mRNA