Moc09g30750 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g30750
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr9: 23207048 .. 23217246 (+)
RNA-Seq ExpressionMoc09g30750
SyntenyMoc09g30750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGATTGATGATTCAACCCCTAACTCTGAAAGCAGAAGGAAGACTGTGCCCTCGGTTGTTCCAGAGAAAAGGATCATAGTGTCCGAGAACCGTGACATCCAGCAACATCTCCTTGCATGCGAGAGACAACTGGTAAGATGATATAGGTGTCTCGAGCTCTCCTTCCCACGAGCTGGAGGTTGAAAAATATTTAAGCGCATTGCAATCCTTGCAATGGAAATATCTCAAACATATTTCCGTCCAAAACCAAAAGCAGTATCTATCTACTCATATTTAACTCTAAAAAATGATTAGTAACCATTCCAACGTTTCTTAATGTTTCCAACAAAATCTTATATTAGTTTTTCTCATAGCTCAAATAGTTAGTTATTGTTATTATTTTTCTTTTTATAGTGCTGACATTGAAAACTATATAAAAAAGTTTACGTATCTACCCAATTTAAGATAAATAATATAATGATTTATGATAGAGAGAAAACTCTCCTCACCATTCAGAGCATTGTACTCCTTACCCTCACATGATCTTATAGTAAAATGACAAGTCTTAGCTATTCTTTTATCTTAATTATTTTATCAAAATTCATAATCTCATCAAAAATCTCTTTTAGTCTTTTAGAAAAAATGTCTGACTATTAATTCTCCAATTTTTCTCCCCCCCCTACACCATCTCACCTCATTCTTTTTCTCACTCTCAACTTATGCATCGCCCTAACGTCTTTCTTTTCTCCCTTCGTTTTTTTTTCTTCTAAATTAATGTAGTATAAAAAATACATATCCACAATTTAAAGTTACAAACACACATATATGTATATATTTATTTTTAATTTTCATAGTTTTAAATGATTGTTGAAAAATCACTTAACAAATATCATTTTTTTGCTCTATTCTATTATTTTGCTTGGCATCTCATGGTCTTCTAAGTTAAATAACGCTTCTGCAGTTTTTTATTCATAACCATTTTTACAAAGGATGTAAATGAAATACGTACTGAAAAAAAAAGATACAAATAAGTTAGAAAAAGAAGGAAGTGAGATGGCGTAGGGAGAGAGAAAAATGGGAGAATGACTCGTCAAACACTTCTTTAAAAAGACTAAAAGATATTTTGAAGATATTTTGATGAGATTATGGATTTTGATAGAATAATTAAAATAAAAGAATAGCTAACACTTATCATTTTACGATAGGAACACGTGAGGGTAAGAAGCACAATGTTTCTGAACGGTAAGGATTCTCCTTATGATAGTGTTTCTTTAGCATCTAAAAAGTTCTCCTAAACGCTATTAATTGTTAAAAGAAAATTAAAAAGTTTGAACTATTAATGAGATTTTGTTGGTAGGAGTTGGGCTAAATGCTATAAATAGCTTATAACGTTTTTCATAAGCAATTTTTTTAGAAGGTTTCTCATAAGCAATTATTGGTTGGGGGTTGGAAATTCTCTACTACGTGTCACAGTTTCAAACCCGACCACTAAATAAGTCTGAATACACAAGATTAGAACATGTTTTATGTTTCGTGATTTCTAGAGAGGATACCGTAGACAGTTACCGTTTAGTAGACTCATGATAATTGGTTCACATGTACACGCGAATCTTGATTTGAATTTGAGAATAAAACCAGTTCAGACCTTAACTAATTTGAACGTCCGAATGCTCATCTTTTTGCAGGTCAATTCTAATTGAGATTCGTGAAATGTTAATTGAGTGAGATTTTAAGAATAGTTAGGTTTAATTTATTGAAAATATGATATGACTTTTGACCCATTTTCTATATGCCATATTCATGTCATTATCTTTTAAGATGTAAGTAAATATGAAATTTAGTGAAATTTTTAAAATTTAAATTGAGTTTTCAACGTAAACGGAACAAAATAGAAAACGTATAAAAGTTCGAAAACAAAATGAAACTTTCAAAAATTCAAAATTTTTATAAATTGTTATTTAAATTTTATTTTAGTTTCATTACTTTCAAGTTTAAATTTTGAAAACCCAACTGAATGTGACTTGAAAACGTGTATTCTAATTTTTTTTCCATTATTTTTTTAATTTCTAGTTTATTTTATTTTATCTGTCAAAAGGCCACATCTTCAAACCTTTACATTTATTACAAACAACTAACCCCATGATGTTGGATTATAAAAAAAAAAAAAAAAAAAAAAAGCATCTAAAATATTTTAATGGGAAGTTTTTTTTAAACAACAACCAAGAGTCAATAAAGTCATTTAAAATACAAAATAATTTATGTCCCTTTCTCAAGTAGAGATTATATTGTAATTTAGAGTAACTGGTAAAGTGCTTGAAAATCAAAATTTTTCCACTATTTTGACAATTTAAATCAACCCTTTGAATAAGAACTAGTAGGTAAGAATTGTAAAAAAGTTTTCTTTTTGTTCAGATGTAAAGAGAGAATCAATTTTTTAAAATAATACTTAAAACTGGATACTACACTTAAAAGAGAAGAAATATTTTGATTTTTTTAAAAAACTAAATAGTGGTTAAATTTTTTTAACGTTTTTCAACATCTAAATATTATTATTATTCGGTTTAAATATTATTTTGTTCTCTATATACTTTCAGCTTTCTTCATTTTGGTCGATATGTATTTTTAAATTATTCATTTTCAACTTTAATGTGTTTATTCTAGTCGATGTAATTTCAAAACATCAGTTTTAGTTTCTGTGTTTTTGAAAAGCGACAATTTTAGTCTCTATTTAAATTTTTTTTAACACAAACTCTATAAACTATGAAACCCTCTATTATAATAGAAAAAACTATGATTGTATTTCTAGAAATTTATTTAGTATATTGTCGTGTTGAAATTGTGACGTAAACCATAAAAAAAAGATAAAAATAGTCACAATTTTTAAAAGTAGAACGATTGACAGTGACATCTTGAAAAAGTGGAGATTGACTTTTTCAGCCATTTTAGTGTGCAGCCAAGGTGGAAGTTGGAAAAGTTGAGGAAAATGTGGGGAAGAAGTGCGGCCCATAGAGGCACGTTTATTTGAAAATTCATACCTAACTACTATATTACTTTATAAATATATAATAATAATATTAATAATGAAAGGTGCTCCATATTATATATTGCACTACACTTTCCTCCTAATTTAATTGATTTTAATTTGTTTCGAGCAGCTGTTGTGGGTGGAATTCTTTGAATGATCATACGTCTATGTGACATCTATAGGCCATGCTAAGCTTACACTTTAATAAATCTTAATAAAATAAGGTAAACATGTGTATGTGGGTATTCGGACCACTAATCACATAAGATAACTGTTTGACTCTACTACATTTGATTACTATGAAAATACATGAAATTAATTTTTAAATTGGTGGTCATCGGTATGATGGAGAACTTTGAATTGGTAGGATTCCAATTCGAGCAAGTGCAAGGCTTGATCTCGATAAGTGAGAGAGATGAGAAGTTGGTGTGACGGAATCTAGAAGACCTCCGAGAGTTATTAATTTGCTCAATTCCAAATTTCCAACTAGCCAATAAATGAATGGCACACATTTAGAGGATAGATCATTAATGTTCTTGACAAATTAGAGGATCTAGTGGTGGCAGAGGCGATGATGAGCTTATAATGTAGCATTGTGGATGATTATTTAACTTTCCTATTTAAATTGTTCAAATAGATAAAATTTATTATCTTATGATATTTATTTCCAATCAAAAAATTGTGAATATGAATCTTCACCCTCCACATGATTTATTCGAAAAAGAAAATTATTTTATAACAAGCCGTTAGCTTTTACATTAAAGACAATTAGAGAATTAAATCAACAATAATATTTAAAAGTTTTACTAGTATCTTGAGTGTGTCTATATATATAAAGGAGGAAGATGATAATACTATTCTAATTAATTAATTGAGCTCAGAATAATTTACATACATTTACTCATTCTTGTCATCAAAATTAGGTAATTTATGACCTATGTTATTACTGAAAAATCGATAATCACAATAATTCCTCGAGAACACTCTTGGATTTTAAACCTGAAAAAGGCAATTTAGCACTCTGACCATCAAGTCATGTCTGTGTCAAGTAAGTAATATAAGTGTATATTTATAAATCTTTCCTTCACATACCTTCTTCATTTGCCCATATGGTATTTATAGATGAAGAAGGCAAAAAGATGACGGGACGGTTGAGTAGTTTGGCTCCTCATTTTGAATTAAAACGGTTCCCTCTGCATGAAAATAGGGAATTTGCATGTTTTTAGTGGGGGAGCGGTTTGATGGTTACGACATAAATAGTGGAGTAACCCGTTAATCTTGTTGTCCAAACCGGTCATGTGTCCAGAGTTCGGTCCCCCGACCTTGCGCTCAGTTGACTCCCCCTTTAATTAAAATGGAATGACGTATCTTCAAAATTGGGTTAAACAACCTAATTGATAAACATTTTTGTTTCTTGTTTTTTTCTTCTTCAATAAAAAAAATATTATTACATTTGGTAATTGTTTTATATTTATTGTTCCTTTTATTGAAAAAAGAAACATAAAATTTCTACACAATTTTGAAAACGTTTCTTTAAAAATGAAAAACGAAAAACGAAAAACGAAAGATAGAACTAAATACTTATATTTCTCTCTCATGAATTAAAAACAAAGACATACAAATAAGAAGCATAAATATTACTAAATCAATATCAGTTATGGAGAGGTGGGCATATTAGTTTTAGTGACTATCTTTTCTACTTTATCGTTAGAGAGATGACTATATAATTTGTCTTTGCTCCCGTGTGAATGAATGTACCAAATTTTCCTCCTAGTAGTTATCACAATCTACAATGTAATATGTTTAGGTTAAAAGTTAGGCCCCTTTTTCTTACTAGTATTCCAAAGTAGTTAATTTTGTCTTTTGTTACTTTTCAGGTCATTTATTTTGACATCGAAAAATATTCGGTTCTTTAACAGTGTTGACTAAATTTTGTCCTCGTCGTCATTGAAAATTTGACAACTCATTAATTTTTATAAAAAAGTCTCTGTTTTTGTATTTCTCTATCTTAGTTGTCAAATATTTAATGGTGGTAAGGACATGATTGCTCCTCACCATTAAGGAGCCAATTATTTTCCTTTTACATCATTGGTCTTCATCTTCATTAATTATTAAGCCATATTATTCTTAAAATACAAAACGCTAAATATATGTTTTTGTCTCTAATATTTTAGTATGTTTTTTTCAATTTAGTCTCTATTGTTTAAGAAGTTTTGATTCAATACGTCTGTTATGCGTTAACATTTTTCAATTTAGTCCTTCATCATTTGGGTGAATGTTAAATGAATTGCCGACAAAATTATATCACATAATACTTAGTGAGCTGGTGGAAATTAGGAGAAGAAAACTTGGAGTTTCTACTAGTTTATTAGAAATTTGGAGGGGGAATTAGAAACTATCATCTCTTAGATGACATTTTTCTTCCGGTGGATTTTCGCCTATTATGTCATATAGTGATACATTTTTCTTCCGGTGGATTTTCGCCTATTATGTCATATAAGTTTATCACTAGTCAATTTGAACATTTACCAACAGTAAGAGAATAACTTGAAAAATGTGTAAATAACTTGAAAAATGTTAAAACATAATTAAGAGGGGACCAAATTGAAAATTTTTAAACATTAAAGACTAAATTAAAATATTATGGGATAAAACATACGTGGCTAATAAAAAGAAACATTTGGTTTCACTATCTTTTATGTTGTAAGTGAGATAAGTGTGGTAGATGCATAGAGATTAGTAAGAAAAAAAAGTGTGTTTAGGAAAGAAAAATGTTAGTTTAAGAAATTAAATGTGTGGAGGGAAATTGGAGAGAGAAAGTTTGTAGGTGTAAGAAGTCAGTGAGAGTAAGTGTGTGTGTGTGTGTGTGTGTGTGAAGGGAGCTCGATTAGTGAGAAAAAATGTATGTAGAAAGAAATTAGTGAGAGAGAGTATGTATAGATAGATTTTTTTTAAAAAAAAGTGTATGTTATGACTTATGAGAAATTAGAAATGAAATATTTAATATAAAATACGTGTTAAAATATTTATAAATGACTAAAGCGAACATAGCTCGACGGTAATTGATATATATCTCCAACCAACCAAGATGTTGTGAGTTCAATCTCTCACCCGCACATGTTGCACTAAAAAAATATATTAATAATAAATAAAAACATGTATAAATTGTTGGAATTGAAGTAAGAATAAGATAAAAAGGATTGTTGGCACGACCGCGGTGCTAACTCAGTACCGTTCAAATAATTAAAAATAAATATAACGTTTTTTCAAAACTATAAAAGTGATTCAATACACTTTGTCATTCCCAACATAAATTACTCTCTTTGTTTATGAAAAAATCCTTTCATAAGTGTTTTTAGCTTTCATGAAAAGTGTCAACGGAATGGATAAGATAGTAATTGCCTTTTTTAAAGTTGAAAGGTTTGATTTTCATCCTTGCAACTATTGAACTTGAAGATAAAGTTTTTCCTGAGAGTGCTTTTTAAATTGTAATCAAATAAAAAAAAATTTGAAGTGGGAAAATACTTTTAACTATTTAAAAACACTTTTATCCTAGGTAAAGGAATTCTCAAATGTCAAAGCGAGCATAGCTTAACGATAATTGAAATATATCTCCAGAAAATTAATTTACTTAATTAATAATAATTATATTATGTGTGCATATATTATGATCAACATTCTAATATTATATGTCGATAGGAGCATAACTCAACTATTCAAGATATTACTTATCTCTTATTTGTTCAAAACTAAAGAAAAGAAAACCTAATATAATCTAATATTATAAATTTGACCTTAAGATCATAAATACCAAAAGAAAAAAAAAAGCTTTCTTAAGAAAATAAAAATGAAGAATTATGACTTGACCACAGACCGATTCATTTTTTTCGTGACACAATTTAGGACTCCTAATAAATAGAAACAACAAAAACTAATAACAGGTTTGAAAATTATTTTTCAAGGTTTTGAATAGAGAAAATAATTCAAATGGTTTGTCAAATGGTTTGTCAAACGGTTAGCAAACAACATCATAAAATATAAAAAAAACTACTTTTTTTTTCCCTGGTGAATTATTGTTAAAAATCATGGAATAGTGGAATATCTTGGAGATAATGACCAAACTACCCTCCACTCCTTGAGAGAGAAAAGGAGAATGTCAAGGTCAAGAAAGTATAATCTCATTGCCCCAAATAGTTGGGAAGAAATTATTGGAGAGAACTAGAATAATGTAGCTGACGTTTTAATAGGTATATATGGACAAGAGAGAATTTAAAAATTGTATTTGAAAGTAGATAAATCTTGAGTACGTCCGCCCTATATTGTGACTGCTATATTGAATAATTTTTCTATTGTGTAGTAGTGTCAAATTTCTCACAAAATGAACGTTCTCTATTTTAAATTAGAATTTAGGTTGTGGACGAAAAAATAAAATTTGAAGTTTAATCTTTAGTTTTCGCATCAGTATCAATTTGATTTGTAACTCATAAAATTTTACTAAAATAGTTTATTTTATAGTCCTTTAACATTATTTTTTATCTACTTTTTTAAGTACTAAAAATGGAGAGGTAGAGTTTTCTAGGAGAATCCAACCTTGGACTTTAAAAAAAAGTAATGGATTGGATTGGTTTCCAATGGCTACCACTAAGGGAATTGAACTTTTTTATGACATTACATTACAAGAAGTTAATTTAATTTAACGTTGTTTTATTATTTTTTAATAAAATATTTTTATACTATTTTTTAGTACAATATTGTTGAGATTGGTGGAGTTAAAACGACGTTGGAACGAGTTAGGGAAGAGTCGGGATCAAGCCGGGACGCGTCGGGATCGAAGCAGGATGAAAACAGGGGAGAAGCGAACGTTGCAGGCCACTCGAGCCGAGGAGGCAGTGCCGCGGTGCTGTCCAGATCGGGGCGTAGCACAGACTTTCTGTCTGTAGTGCCATGGCGCTGTTTCGATGTCTATATAAATGCAGTTTCGGGTTTAGGGTTTTCCAGCCGAAAAAGGGGTTATTGTCCAGCCGATTTTGAGCCCTTTTTCAGAGGGTTTCGTGGCAGTTTCAAGGGAGAGGCTCGAGCATTGGCAGAGGCATTGAGGCTCATCAAGATCAACACATTCGGAGTAATTAGATTTTGGTTATTGTGAGTTTTTCATTCATGTTCCTAAGTATTAATTGTGTAAAATATTTAGAAGCTAGAGGGCTTTTGATGAGACATCTAGGGATATTTTAGGGAGTGTTATTGTATCCGATCATAAACAATATTAGTGAATTACCCACATCTGAGTGGAAGACTGGACGTAGCTCTTAGTGGTGAACCAGTATAATTTGCTGTGTCGTTTACTTGTGTTTACTGTTTTCTTCATATTTGCATATTCTTCGTTGTGTTGGATATTTTTTGTGGAAGGGGAAATTATTTAGGTCATCAATTTCCCAACAAGTGGTATAAGAGCCGTAGGGTTGCAGTATCATGGGAGACAAATATCACGCACACCATTATATGAAGGGATTCTGCAGTTCATCGGGGAGAATTTCAGTTTTTTGAAGATCTTCTTACATGCAAGAAGATACACAAGACTTTAGGGGGGAGACCAGTAGGGATGGTAGATAAGGATTGAAATGAGATGGATGAGCAGGTCGTTGCGAACATCAGAATGTTGTTGTCGATGAATGTTTGTAGTCTGGTGGCGAAACAGACTACAGCGAAAGATTTGTTGAAGGCCTTGCAAAACAGGTATGAAAAACCTTCTGCCAATAGAAAGATACTTCTATGGACGAGGTATTTTAATATCCACATGGAGGAGGAAACCTCGGTGAATTCCCACATTAATGAACTCACCGATATCTTAAATAAGTTAGAAGGGATGGGTGTCAAGATTGACGAGAGGTGAAAGCTATGAGGTTGTTGACGTCTTTGCCTGACAGTTGGGAGACGATGAAGACCGCGATGTCGAATTCGTTAGGGGAAAATAGCTTGAAATTTACAGCTATTTGTGATGCCGTCTTATCTGAAGAAGTCCCAAGAAAATTAAGGAAAATGTCTGCATCTACTTCAGGGGTAGAAAACGAGGTTGATTCAGCTTTGGTAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTACAGTGGGAAGCAGCAGTGGAGATATAGTAGGGGTAGTGGGAGTTCCAGTGGAGAAGTGAAGTGTTTTTACTGCCACAAGAAGGGACACGTAAAATGTTTTTGCAGGAAGTTTAAAGATGATCTTGAGAAGGAGAACACTACTGCAAATGTTGTAACAGTAGGAGAACAGATTGAAGAGTTTCTGGCTTGTGTTCAGAGGAACATATTTGTAAACCAGTGGGTGGTAGACACTGTAGCATCAGCGCACGTTGCTTCAGACAAATGTTGGTTCTCATCTCTTACTGTAGGTGAATATAGTTCAGTGAAGATGGGGAATGTGAGTATCTCCAAGGTGAGAGGAATTGGAGATGTTTGTTTGAAGACAGGCGAAGGGGCCGAGTTGGTGCTACGAGGTGTCAGGTATATTCTTAGCTTCAGATTAATTCGTTATCCGCAGGGAAGCTAGATGACGATGGCTACAGCAGTGAGTTTAGTGGGGGGTTGTTGGAAGCTCAGGAGGGAATCCAAGGTGGTGGCAACAGGCCACAAGAGATCTTCTGTTTATGTATCAGAGTTTGGGGTTGCTAAGGGTTCACTGAGCAGACTATGCATAGAGTAGCTGCAGATGGTTGAGGACGAGACCTTAGAGGATCAGCAGCATTGATGCCCAGAATAGATCAGAAGAATCTGTCATCAGCTCAAGTAAAACAGTTGAGAAGTATAGAAAAGGGAAATGGGAATTTGATAGGCCATCGAGTTCATACCTCAGTTGTTAGACGTTCAGGCGAGCTGGTGAAGTCGCATAGGCGAATTAGTGCATTAAAGGGTATGGGTTCTGTTTCTAGTGTGGCGACAGACTTGGGTGGGAGCGCCAAGTCATCAGGAGAACCTTCCTTTATAAGTCATTGGATTCGATTGAGAAAGGAAGCGACGGGGACCACTTAGATCAAGTGGGAGTACGTGACTATGTCTCTAAGTCTGGGGGACAAGACCACGTAGAGCTGCCCAGTCTTGGGGTAGATTCAGACGATGCTTGGGTAGGGCCGAGCAATGTTGATCAGTTCGTTGATAGAGGAGTCAGAACTGTGCCTTGA

mRNA sequence

ATGATGATTGATGATTCAACCCCTAACTCTGAAAGCAGAAGGAAGACTGTGCCCTCGGTTGTTCCAGAGAAAAGGATCATAGTGTCCGAGAACCGTGACATCCAGCAACATCTCCTTGCATGCGAGAGACAACTGTACAATATTGTTGAGATTGGTGGAGTTAAAACGACGTTGGAACGAGTTAGGGAAGAGTCGGGATCAAGCCGGGACGCGTCGGGATCGAAGCAGGATGAAAACAGGGGAGAAGCGAACGTTGCAGGCCACTCGAGCCGAGGAGGCAGTGCCGCGGTGCTGTCCAGATCGGGGCGTAGCACAGACTTTCTGTCTGTAGTGCCATGGCGCTGTTTCGATGTCTATATAAATGCAGTTTCGGGTTTAGGGTTTTCCAGCCGAAAAAGGGGTTATTGTCCAGCCGATTTTGAGCCCTTTTTCAGAGGGTTTCGTGGCAGTTTCAAGGGAGAGGCTCGAGCATTGGCAGAGGCATTGAGGCTCATCAAGATCAACACATTCGGAGTAATTAGATTTTGGTTATTTCTGGTGGCGAAACAGACTACAGCGAAAGATTTGTTGAAGGCCTTGCAAAACAGTTGGGAGACGATGAAGACCGCGATGTCGAATTCGTTAGGGGAAAATAGCTTGAAATTTACAGCTATTTGTGATGCCGTCTTATCTGAAGAAGTCCCAAGAAAATTAAGGAAAATGTCTGCATCTACTTCAGGGGTAGAAAACGAGGTTGATTCAGCTTTGGTAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTACAGTGGGAAGCAGCAGTGGAGATATAGTAGGGGTAGTGGGAGTTCCAGTGGAGAAGTGAAGTGTTTTTACTGCCACAAGAAGGGACACGTAAAATGTTTTTGCAGGAAGTTTAAAGATGATCTTGAGAAGGAGAACACTACTGCAAATGTTGTAACATGTGGCGACAGACTTGGGTGGGAGCGCCAAGTCATCAGGAGAACCTTCCTTTATAAGTCATTGGATTCGATTGAGAAAGGAAGCGACGGGGACCACTTAGATCAAGTGGGAGTACGTGACTATGTCTCTAAGTCTGGGGGACAAGACCACGTAGAGCTGCCCAGTCTTGGGGTAGATTCAGACGATGCTTGGGTAGGGCCGAGCAATGTTGATCAGTTCGTTGATAGAGGAGTCAGAACTGTGCCTTGA

Coding sequence (CDS)

ATGATGATTGATGATTCAACCCCTAACTCTGAAAGCAGAAGGAAGACTGTGCCCTCGGTTGTTCCAGAGAAAAGGATCATAGTGTCCGAGAACCGTGACATCCAGCAACATCTCCTTGCATGCGAGAGACAACTGTACAATATTGTTGAGATTGGTGGAGTTAAAACGACGTTGGAACGAGTTAGGGAAGAGTCGGGATCAAGCCGGGACGCGTCGGGATCGAAGCAGGATGAAAACAGGGGAGAAGCGAACGTTGCAGGCCACTCGAGCCGAGGAGGCAGTGCCGCGGTGCTGTCCAGATCGGGGCGTAGCACAGACTTTCTGTCTGTAGTGCCATGGCGCTGTTTCGATGTCTATATAAATGCAGTTTCGGGTTTAGGGTTTTCCAGCCGAAAAAGGGGTTATTGTCCAGCCGATTTTGAGCCCTTTTTCAGAGGGTTTCGTGGCAGTTTCAAGGGAGAGGCTCGAGCATTGGCAGAGGCATTGAGGCTCATCAAGATCAACACATTCGGAGTAATTAGATTTTGGTTATTTCTGGTGGCGAAACAGACTACAGCGAAAGATTTGTTGAAGGCCTTGCAAAACAGTTGGGAGACGATGAAGACCGCGATGTCGAATTCGTTAGGGGAAAATAGCTTGAAATTTACAGCTATTTGTGATGCCGTCTTATCTGAAGAAGTCCCAAGAAAATTAAGGAAAATGTCTGCATCTACTTCAGGGGTAGAAAACGAGGTTGATTCAGCTTTGGTAGCTCAGAACAAAGGGAAGGCAAAGATGAGTTACAGTGGGAAGCAGCAGTGGAGATATAGTAGGGGTAGTGGGAGTTCCAGTGGAGAAGTGAAGTGTTTTTACTGCCACAAGAAGGGACACGTAAAATGTTTTTGCAGGAAGTTTAAAGATGATCTTGAGAAGGAGAACACTACTGCAAATGTTGTAACATGTGGCGACAGACTTGGGTGGGAGCGCCAAGTCATCAGGAGAACCTTCCTTTATAAGTCATTGGATTCGATTGAGAAAGGAAGCGACGGGGACCACTTAGATCAAGTGGGAGTACGTGACTATGTCTCTAAGTCTGGGGGACAAGACCACGTAGAGCTGCCCAGTCTTGGGGTAGATTCAGACGATGCTTGGGTAGGGCCGAGCAATGTTGATCAGTTCGTTGATAGAGGAGTCAGAACTGTGCCTTGA

Protein sequence

MMIDDSTPNSESRRKTVPSVVPEKRIIVSENRDIQQHLLACERQLYNIVEIGGVKTTLERVREESGSSRDASGSKQDENRGEANVAGHSSRGGSAAVLSRSGRSTDFLSVVPWRCFDVYINAVSGLGFSSRKRGYCPADFEPFFRGFRGSFKGEARALAEALRLIKINTFGVIRFWLFLVAKQTTAKDLLKALQNSWETMKTAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTSGVENEVDSALVAQNKGKAKMSYSGKQQWRYSRGSGSSSGEVKCFYCHKKGHVKCFCRKFKDDLEKENTTANVVTCGDRLGWERQVIRRTFLYKSLDSIEKGSDGDHLDQVGVRDYVSKSGGQDHVELPSLGVDSDDAWVGPSNVDQFVDRGVRTVP
Homology
[Close]
BLAST of Moc09g30750 vs. NCBI nr
Match: CAN75724.1 (hypothetical protein VITISV_040386 [Vitis vinifera])

HSP 1 Score: 72.4 bits (176), Expect = 9.8e-09
Identity = 48/159 (30.19%), Postives = 85/159 (53.46%), Query Frame = 0 

Query: 189 LLKALQNSWETMKTAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTSGVENEVDSA 248
           LL  L +SWET +T++SNS  + ++    +   +L+EE+ RK +  S+ +        + 
Sbjct: 113 LLGTLSDSWETFRTSLSNSAPDGTMNMDLVKSCILNEEMRRKSQGSSSQS--------NV 172

Query: 249 LVAQNKGKAKMSYSGKQQWRYSRGSGSSSGEVKCFYCHKKGHVKCFCRKFKDDLEKENTT 308
           L+ + +G++K S   K + R S+   +    V+C YCH KGH++ +CR+ K D+++   T
Sbjct: 173 LITEKRGRSK-SIGPKNRDR-SKSKTNKFANVECHYCHLKGHIRKYCRQLKKDMKQRKET 232

Query: 309 ANVVTCGDRLGWERQVIRRTFL--YKSLD--SIEKGSDG 344
           + V+  G  +       R+ F   Y S D  S+  G+DG
Sbjct: 233 SWVIDSGASI---HATYRKDFFTSYTSGDFGSVRMGNDG 258

[Close]
BLAST of Moc09g30750 vs. NCBI nr
Match: KAG5252555.1 (retrovirus-related polyprotein from transposon [Salix suchowensis])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-08
Identity = 51/154 (33.12%), Postives = 77/154 (50.00%), Query Frame = 0 

Query: 180 VAKQTTAKDLLKALQNSWETMKTAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTS 239
           +A +  A  LL +L +SWET+  ++SNS     +    + D +L+EE  RK         
Sbjct: 53  LADEMQALILLSSLPDSWETLVVSLSNSTPSGEITLKTVKDCILNEEKRRK--------- 112

Query: 240 GVENEVDSALVAQNKGKAKMSYS-GKQ---------QWRYSRGSGSSSGEVKCFYCHKKG 299
           G       ALV +++G+++  +S GKQ         +W+  RG   S    KC+YC K G
Sbjct: 113 GTSTSESHALVTESRGRSQSRFSHGKQDKESSNRKGKWK-PRGRSQSRKGFKCYYCDKPG 172

Query: 300 HVKCFCRKFK-------DDLEKENTTANVVTCGD 317
           H++  CRK+K       +D  +EN TA VV  GD
Sbjct: 173 HIQKDCRKYKRDQKGKDEDRNEENGTAAVVFDGD 196

[Close]
BLAST of Moc09g30750 vs. NCBI nr
Match: KAG5243437.1 (retrovirus-related polyprotein from transposon [Salix suchowensis])

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-08
Identity = 51/154 (33.12%), Postives = 77/154 (50.00%), Query Frame = 0 

Query: 180 VAKQTTAKDLLKALQNSWETMKTAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTS 239
           +A +  A  LL +L +SWET+  ++SNS     +    + D +L+EE  RK         
Sbjct: 53  LADEMQALILLSSLPDSWETLVVSLSNSTPSGEITLKTVKDCILNEEKRRK--------- 112

Query: 240 GVENEVDSALVAQNKGKAKMSYS-GKQ---------QWRYSRGSGSSSGEVKCFYCHKKG 299
           G       ALV +++G+++  +S GKQ         +W+  RG   S    KC+YC K G
Sbjct: 113 GTSTSESHALVTESRGRSQSRFSHGKQDRESSNRKGKWK-PRGRSQSRKGFKCYYCDKPG 172

Query: 300 HVKCFCRKFK-------DDLEKENTTANVVTCGD 317
           H++  CRK+K       +D  +EN TA VV  GD
Sbjct: 173 HIQKDCRKYKRDQKGKDEDRNEENGTAAVVFDGD 196

[Close]
BLAST of Moc09g30750 vs. NCBI nr
Match: KAG5233138.1 (RNA-directed DNA polymerase [Salix suchowensis])

HSP 1 Score: 71.2 bits (173), Expect = 2.2e-08
Identity = 50/154 (32.47%), Postives = 77/154 (50.00%), Query Frame = 0 

Query: 180 VAKQTTAKDLLKALQNSWETMKTAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTS 239
           +A +  A  LL +L +SWET+  ++SNS     +    + D +L+EE  RK         
Sbjct: 53  LADEMQALILLSSLPDSWETLVVSLSNSTPNGDITLKTVKDCILNEEKRRK--------- 112

Query: 240 GVENEVDSALVAQNKGKAKMSYS-GKQ---------QWRYSRGSGSSSGEVKCFYCHKKG 299
           G       ALV +++G+++  +S GKQ         +W+  RG   S    KC+YC K G
Sbjct: 113 GTSTSESHALVTESRGRSQSRFSHGKQDRESGNRKGKWK-PRGRSQSRKGFKCYYCDKPG 172

Query: 300 HVKCFCRKFK-------DDLEKENTTANVVTCGD 317
           H++  CRK+K       +D  +EN TA +V  GD
Sbjct: 173 HIQKDCRKYKRDQKGKDEDRNEENGTAAIVFDGD 196

[Close]
BLAST of Moc09g30750 vs. NCBI nr
Match: KAG5250570.1 (Retrovirus-related poly from transposon [Salix suchowensis])

HSP 1 Score: 70.5 bits (171), Expect = 3.7e-08
Identity = 49/145 (33.79%), Postives = 73/145 (50.34%), Query Frame = 0 

Query: 189 LLKALQNSWETMKTAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTSGVENEVDSA 248
           LL +L +SWET+  ++SNS     +    + D +L+EE  RK         G       A
Sbjct: 125 LLSSLPDSWETLVVSLSNSTPSGEITLKTVKDCILNEEKRRK---------GTSTSESHA 184

Query: 249 LVAQNKGKAKMSYS-GKQ---------QWRYSRGSGSSSGEVKCFYCHKKGHVKCFCRKF 308
           LV +++G+++  +S GKQ         +W+  RG   S    KC+YC K GH++  CRK+
Sbjct: 185 LVTESRGRSQSRFSHGKQDRESGNRKGKWK-PRGRSQSRKGFKCYYCDKPGHIQKDCRKY 244

Query: 309 K-------DDLEKENTTANVVTCGD 317
           K       +D  +EN TA VV  GD
Sbjct: 245 KRDQKGKDEDRNEENGTAAVVFDGD 259

[Close]
BLAST of Moc09g30750 vs. ExPASy TrEMBL
Match: A5AJ06 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_040386 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 4.8e-09
Identity = 48/159 (30.19%), Postives = 85/159 (53.46%), Query Frame = 0 

Query: 189 LLKALQNSWETMKTAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTSGVENEVDSA 248
           LL  L +SWET +T++SNS  + ++    +   +L+EE+ RK +  S+ +        + 
Sbjct: 113 LLGTLSDSWETFRTSLSNSAPDGTMNMDLVKSCILNEEMRRKSQGSSSQS--------NV 172

Query: 249 LVAQNKGKAKMSYSGKQQWRYSRGSGSSSGEVKCFYCHKKGHVKCFCRKFKDDLEKENTT 308
           L+ + +G++K S   K + R S+   +    V+C YCH KGH++ +CR+ K D+++   T
Sbjct: 173 LITEKRGRSK-SIGPKNRDR-SKSKTNKFANVECHYCHLKGHIRKYCRQLKKDMKQRKET 232

Query: 309 ANVVTCGDRLGWERQVIRRTFL--YKSLD--SIEKGSDG 344
           + V+  G  +       R+ F   Y S D  S+  G+DG
Sbjct: 233 SWVIDSGASI---HATYRKDFFTSYTSGDFGSVRMGNDG 258

[Close]
BLAST of Moc09g30750 vs. ExPASy TrEMBL
Match: A0A2N9I523 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47012 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.4e-08
Identity = 45/125 (36.00%), Postives = 69/125 (55.20%), Query Frame = 0 

Query: 189 LLKALQNSWETMKTAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTSGVENEVDSA 248
           +L +L NSWE M+ A+SNS G+  LK+  I D +L EEV R+    ++S+    N     
Sbjct: 125 VLASLPNSWEAMRIAVSNSAGKGKLKYNDIRDLILGEEVSRRDAGETSSSGYALN----- 184

Query: 249 LVAQNKGKAKMSYSGKQQWRYSRGSGSSSGEVKCFYCHKKGHVKCFCRKFKDDLEKENTT 308
           L  + +GK K    G+ + R  R       +++C+ C K GH++  CR+ K   + EN +
Sbjct: 185 LETRGRGKDKNYNRGRSKSRKGRSKSKPGRQLECWNCGKIGHIRKNCRELKK--KNENDS 242

Query: 309 ANVVT 314
           ANVVT
Sbjct: 245 ANVVT 242

[Close]
BLAST of Moc09g30750 vs. ExPASy TrEMBL
Match: A0A2N9IKI1 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-08
Identity = 44/125 (35.20%), Postives = 69/125 (55.20%), Query Frame = 0 

Query: 189 LLKALQNSWETMKTAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTSGVENEVDSA 248
           +L +L NSWE M+ A+SNS G+  LK+  I D +L EEV R+    ++S+    N     
Sbjct: 148 VLASLPNSWEAMRMAVSNSAGKGKLKYNDIRDLILGEEVRRRDAGETSSSGSALN----- 207

Query: 249 LVAQNKGKAKMSYSGKQQWRYSRGSGSSSGEVKCFYCHKKGHVKCFCRKFKDDLEKENTT 308
           L A+ +GK +    G+ + R  R       +++C+ C K GH++  C + K   + EN +
Sbjct: 208 LEARGRGKDRNYNRGRSKSRKGRSKSKPGRQLECWNCGKTGHIRKNCWELKK--KNENDS 265

Query: 309 ANVVT 314
           ANVVT
Sbjct: 268 ANVVT 265

[Close]
BLAST of Moc09g30750 vs. ExPASy TrEMBL
Match: A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-08
Identity = 60/185 (32.43%), Postives = 87/185 (47.03%), Query Frame = 0 

Query: 144 FRGFRGSFKGEARALAEALRLIK--INTFGVIRFWLFLVAKQTTAKDLLKALQNSWETMK 203
           FR    S   E   +AE L  IK  +N    ++        +  A  LL +L  SWET+ 
Sbjct: 317 FRKLVNSKYKEGTPIAEHLNEIKSIVNQLAAMK---ITFDDELQALLLLSSLPESWETLV 376

Query: 204 TAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTSGVENEVDSALVAQNKGKAKMSY 263
             +SNS  +  +  + +  ++L+EE  RK    S S          ALV +N+G+ +   
Sbjct: 377 VTVSNSTPDGVVTMSQVTSSLLNEETRRKSSGSSHS---------EALVIENRGRGRSKS 436

Query: 264 SGKQQWRYSRGSGS--SSGEVKCFYCHKKGHVKCFCRKF--------KDDLEKENTTANV 317
                   SRG  S  S  +V+C+YCHKKGH+K  CRK         K+  +K+N TA V
Sbjct: 437 KASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTA-V 488

[Close]
BLAST of Moc09g30750 vs. ExPASy TrEMBL
Match: A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-08
Identity = 60/185 (32.43%), Postives = 87/185 (47.03%), Query Frame = 0 

Query: 144 FRGFRGSFKGEARALAEALRLIK--INTFGVIRFWLFLVAKQTTAKDLLKALQNSWETMK 203
           FR    S   E   +AE L  IK  +N    ++        +  A  LL +L  SWET+ 
Sbjct: 81  FRKLVNSKYKEGTPIAEHLNEIKSIVNQLAAMK---ITFDDELQALLLLSSLPESWETLV 140

Query: 204 TAMSNSLGENSLKFTAICDAVLSEEVPRKLRKMSASTSGVENEVDSALVAQNKGKAKMSY 263
             +SNS  +  +  + +  ++L+EE  RK    S S          ALV +N+G+ +   
Sbjct: 141 VTVSNSTPDGVVTMSQVTSSLLNEETRRKSSGSSHS---------EALVIENRGRGRSKS 200

Query: 264 SGKQQWRYSRGSGS--SSGEVKCFYCHKKGHVKCFCRKF--------KDDLEKENTTANV 317
                   SRG  S  S  +V+C+YCHKKGH+K  CRK         K+  +K+N TA V
Sbjct: 201 KASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTA-V 252

The following BLAST results are available for this feature:
BLAST of Moc09g30750 vs. NCBI nr
Match NameE-valueIdentityDescription
CAN75724.19.8e-0930.19hypothetical protein VITISV_040386 [Vitis vinifera][more]
KAG5252555.11.7e-0833.12retrovirus-related polyprotein from transposon [Salix suchowensis][more]
KAG5243437.11.7e-0833.12retrovirus-related polyprotein from transposon [Salix suchowensis][more]
KAG5233138.12.2e-0832.47RNA-directed DNA polymerase [Salix suchowensis][more]
KAG5250570.13.7e-0833.79Retrovirus-related poly from transposon [Salix suchowensis][more]
BLAST of Moc09g30750 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g30750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A5AJ064.8e-0930.19Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI... [more]
A0A2N9I5231.4e-0836.00CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4701... [more]
A0A2N9IKI13.1e-0835.20Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS31378 PE=4 SV=1[more]
A0A438BTH63.1e-0832.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438HI913.1e-0832.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
BLAST of Moc09g30750 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..84
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..97
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 260..304

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g30750.1Moc09g30750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding