Moc09g30630 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g30630
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr9: 23070570 .. 23073712 (+)
RNA-Seq Expression	Moc09g30630
Synteny	Moc09g30630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGCAGCGCCATGGTGCTGCAGGGACAGCACACAGCGCCATGGCGCTACATTGTAGCGCTGTGGGGCTGCTGCTGCGGCTTTTTGCCGTAGAAGCGGCGTGGCTCTGCCCTTAGGCGCCAAGGCGCTGTCGCGGGTGTTTTTCGACGTGTTTCCATGGCTCTGGTTCGCGGTTCAAGGGCGGTTGCGGTCGTTTTCTTATTTTTGTATTATTTTGCTTTCTTAGGGTGCCAAAAACCGGTCCAACTTTGCTATTTAATTATTATATGCATTATGAATGTGTATTTTAATTAAAAGCATATTGCATATTGTATGTCATATAGTTTTAAAATCCCACCATAGGTTACATACATAATATGTATATTTGATATATAGTATGTATGTATAATCATGCATCATATAGTTATAAATGTTATAATGTATTAATGCATGTTTTATTTTCATGATTAATATAAGTGTTGTATTAATTAGATGAAAATAAAGTTGCATCGAGCATGAAATTACTTTAGTTAATATAATTGTTATATTAATGTATGCTTGCAATGAATGATAAAGAATTACATGCAAACATAGGGTCTAAATTTATTAACTTTAAAAGTGGTTTAAAATTAATTAGACCTTAGGTTATATCTTCTAATATGATTAGGGAATAGTCTTTTATTTTGTTTTAACTAGGTTTAAAATGAAATGATAATATACTAAATATAAAATATTGTTTATAAGGAACCCTGTCTAAGGGAGGTTCTGTTTAGGTTGAAGTGTTTAAGTTGACCATAAGGGAACACCTCTACTTGGGAACCGACCTGGGGGTTGAATTAGTCAATATTTTATATGCATGCAATAATGTTCTTAGTTTATTAAATCGTTTAATAAACTAAAACATTAATGTACGACTACCAATATAATAGTTATATTGGGCCGACTAAAAATTCACTTAGTTAATTTCACTTAGCCGGAATTTATCTAAGTAATATACTATAGTCTTAGAATACTAAGTGGGAGCAAAAGAGAATATGTAATATACTGGGTATATATTTGATACACAAAGTATAAATAACATACTTTTCTCTCTCTCACGTTCTCCTTTATATTCACACTGTGAGTTCTATGCTCTGCCTTGTATCGCCCTGGGCGTAGCTTCCTTACAGAAGGTGTTTGCATGGTTCAATATCGAGGTGAATGGAGATATTATTCATAGTAAGTGGGAGAAGGATGTATTACAACACATCCTGCGGTCTTCGTCATTGGTTTGCACCGTGAGGTTTCATACATGACATGCGTGTCGTCCTGGAGCGACCATCCCTACGGAGGGTTCATTGTATGGAATCAAAACCAAGGCAAACTCCAGAAATGGATAAGGGTCTCTTAGATTTTACTCCAATATTTTCCTTCCCTACAACGGGATTATTGGGGCGGACCTTTGAGGTTTGAAAATGGTAGGTCACACTTACGGGGAGTTGTTAAGTTAGTTAGCAATTCCCTAACCAAATGAACAATGACTAAAGATTGTAAGAATAAGAGTTATCCTATTATAAAATTTAGTTAAGAACGTCTCAATGCAGTGAAGGAGTAACTCTCTGCCCTACGGTGGCTCTTGCTCTAAATCACTGAAGCGTCGTTGCAAAACAATTTTGTTAGGATGCTTAATTACTTTTGTTAAAATTTGATTGGGTTTAAAGGCTAATGCATGAAACTAATATAGGTTTGTTTTTACTTTTAGCATGTCTACTTCTATTATTGCACTCCTAGCCGTGGAAAAACTTAACAGCGAGAATTAGAAACAATGGAAATCAAATCTAAACACTATACTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGGTTATCCTCAAGCTCCTACGTTTAATGCCACTGTGGCGATGCGCAACGTGTATGACAGATGGATCAAGGCCAATGATAAGGCTAAAGTCTACATGTTGGCGAGCATATTTAATGTGTTTGCTAAAAAGCACGAGGACACGGTCACTGCCAAGGAGATCGTGGACTCACTGCAGAGCATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTTATTTACAACTCCCGTATAAAGGAGGGCTCCTTAGTGCGAGAACACGTTCTGAACATGATGGTCCACTTCAACGTGACAGAGTTGAACGAGACTATCATAGACGAGCAGAGTCAAGTTAGCTTCATTCTGAAATCTCTTCCGAAGAGTTTCCTGCCATTCCGCAATAATGCGGTTATAAATAAGCTGAAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCGATCTCTTATGAAAAGTAAGGGACAAGAAGGGGAGGCAAATGTTTCCACCTCAAAGAGGTTCCACCGAGGTTCGCCTTCTAGAACCAAGTCTGCGCCGTCTTCTTCTGGAAGTAAGACTTTCAAGAAGAAGAAGGCTGCTGGTAAGAGGTTTAAATCTGACTCCACTGCTGCCGCTATCAAGAAAGGTAAGGCCAAGGCTGCAGACAAAGGAAAATGTTTCCACTGCAACCTAGACGGGCATTGGAAGCGCAATTGCCCGAAGTACCTGGCCGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTTTTAGAAATATGTTTAGTGAAGAATGATGATTCCGCCTGGATATTGGATTCAGGAGCCATTAATCACATTTGTTCTTCGTTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAGGTTGGAACGGGATATGTCGTCTCAGCTGTGGCAGTAGGGGAGCTAAAGTTGTTTACAAACAAGAATATGTATATATTATTAGATAATGTGTACGTAGTTTCTAAAATTAAAAGGAACTTAATTTTAGTTTCTTGTTTGTTAGAACATTTATATTCTATTTCTTTTAATTTAAATGAAGCGTTCATTTCAAGAAATGGTGTCAATATTTGTTCTGCTTTGCTTGAAAACAACTTGTATGTGCTAAGACCAACCATAACTGAAGCAGTTTTAAATACCGAGTTGTTTTAAAATGCTAAAACTCAAAATAAAACGCAAAAAGTTTCTCACAAAGAAAATACCTATCTTTGGCACTTAAGATTAAGTCACATTAATCTCAATAGGATTGGGATGTTGGTTAA

mRNA sequence

ATGCAGCAGCGCCATGGTGCTGCAGGGACAGCACACAGCGCCATGGCGCTACATTGTAGCGCTGTGGGGCTGCTGCTGCGGCTTTTTGCCAAGGTGTTTGCATGGTTCAATATCGAGGTGAATGGAGATATTATTCATAGTAAGTGGGAGAAGGATGTATTACAACACATCCTGCGGTCTTCGTCATTGGTTTGCACCGTGAGGTTCGTCTTGCAAGAGGGTTATCCTCAAGCTCCTACGTTTAATGCCACTGTGGCGATGCGCAACGTGTATGACAGATGGATCAAGGCCAATGATAAGGCTAAAGTCTACATGTTGGCGAGCATATTTAATGTGTTTGCTAAAAAGCACGAGGACACGGTCACTGCCAAGGAGATCGTGGACTCACTGCAGAGCATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTTATTTACAACTCCCGTATAAAGGAGGGCTCCTTAGTGCGAGAACACGTTCTGAACATGATGGTCCACTTCAACGTGACAGAGTTGAACGAGACTATCATAGACGAGCAGAGTCAAGTTAGCTTCATTCTGAAATCTCTTCCGAAGAGTTTCCTGCCATTCCGCAATAATGCGGTTATAAATAAGCTGAAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCGATCTCTTATGAAAAGTAAGGGACAAGAAGGGGAGGCAAATGTTTCCACCTCAAAGAGGTTCCACCGAGGTTCGCCTTCTAGAACCAAGTCTGCGCCGTCTTCTTCTGGAAGTAAGACTTTCAAGAAGAAGAAGGCTGCTGGTAAGAGGTTTAAATCTGACTCCACTGCTGCCGCTATCAAGAAAGGTAAGGCCAAGGCTGCAGACAAAGGAAAATGTTTCCACTGCAACCTAGACGGGCATTGGAAGCGCAATTGCCCGAAGTACCTGGCCGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTTTTAGAAATATGTTTAGTGAAGAATGATGATTCCGCCTGGATATTGGATTCAGGAGCCATTAATCACATTTGTTCTTCGTTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAGGTTGGAACGGGATATGTCGTCTCAGCTGTGGCAGATTGGGATGTTGGTTAA

Coding sequence (CDS)

ATGCAGCAGCGCCATGGTGCTGCAGGGACAGCACACAGCGCCATGGCGCTACATTGTAGCGCTGTGGGGCTGCTGCTGCGGCTTTTTGCCAAGGTGTTTGCATGGTTCAATATCGAGGTGAATGGAGATATTATTCATAGTAAGTGGGAGAAGGATGTATTACAACACATCCTGCGGTCTTCGTCATTGGTTTGCACCGTGAGGTTCGTCTTGCAAGAGGGTTATCCTCAAGCTCCTACGTTTAATGCCACTGTGGCGATGCGCAACGTGTATGACAGATGGATCAAGGCCAATGATAAGGCTAAAGTCTACATGTTGGCGAGCATATTTAATGTGTTTGCTAAAAAGCACGAGGACACGGTCACTGCCAAGGAGATCGTGGACTCACTGCAGAGCATGTTTGGACAACCGTCCTCACAGGCTCGACATGAAGCCCTTAAGTTTATTTACAACTCCCGTATAAAGGAGGGCTCCTTAGTGCGAGAACACGTTCTGAACATGATGGTCCACTTCAACGTGACAGAGTTGAACGAGACTATCATAGACGAGCAGAGTCAAGTTAGCTTCATTCTGAAATCTCTTCCGAAGAGTTTCCTGCCATTCCGCAATAATGCGGTTATAAATAAGCTGAAGTACACTCTTACCACGCTCTTAAACGAGCTGCAGACCTACCGATCTCTTATGAAAAGTAAGGGACAAGAAGGGGAGGCAAATGTTTCCACCTCAAAGAGGTTCCACCGAGGTTCGCCTTCTAGAACCAAGTCTGCGCCGTCTTCTTCTGGAAGTAAGACTTTCAAGAAGAAGAAGGCTGCTGGTAAGAGGTTTAAATCTGACTCCACTGCTGCCGCTATCAAGAAAGGTAAGGCCAAGGCTGCAGACAAAGGAAAATGTTTCCACTGCAACCTAGACGGGCATTGGAAGCGCAATTGCCCGAAGTACCTGGCCGAAAAGAAGAAAGCCAACGAAGGTAAATATGATTTACTTGTTTTAGAAATATGTTTAGTGAAGAATGATGATTCCGCCTGGATATTGGATTCAGGAGCCATTAATCACATTTGTTCTTCGTTTCAGGGAATTAGTTCCTGGAGGCAGCTTGACGCCGGAGAGATGACTCTCAAGGTTGGAACGGGATATGTCGTCTCAGCTGTGGCAGATTGGGATGTTGGTTAA

Protein sequence

MQQRHGAAGTAHSAMALHCSAVGLLLRLFAKVFAWFNIEVNGDIIHSKWEKDVLQHILRSSSLVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVTAKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIIDEQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTSKRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCNLDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISSWRQLDAGEMTLKVGTGYVVSAVADWDVG

Homology

[Close]

BLAST of Moc09g30630 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 7.0e-116
Identity = 223/323 (69.04%), Postives = 268/323 (82.97%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 30  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 89

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 90  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 149

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 150 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 209

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K KAKAA KG CFHCN
Sbjct: 210 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCN 269

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 270 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 329

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           WRQL+ GEMT++VGTG+VVSA+A
Sbjct: 330 WRQLETGEMTMRVGTGHVVSAIA 349

[Close]

BLAST of Moc09g30630 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 7.0e-116
Identity = 223/323 (69.04%), Postives = 268/323 (82.97%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K KAKAA KG CFHCN
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCN 270

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 271 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 330

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           WRQL+ GEMT++VGTG+VVSA+A
Sbjct: 331 WRQLETGEMTMRVGTGHVVSAIA 350

[Close]

BLAST of Moc09g30630 vs. NCBI nr
Match: KAA0047792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 7.0e-116
Identity = 223/323 (69.04%), Postives = 268/323 (82.97%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K KAKAA KG CFHCN
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCN 270

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 271 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 330

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           WRQL+ GEMT++VGTG+VVSA+A
Sbjct: 331 WRQLETGEMTMRVGTGHVVSAIA 350

[Close]

BLAST of Moc09g30630 vs. NCBI nr
Match: KAA0031826.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0032384.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0039313.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0043789.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0048789.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 428.3 bits (1100), Expect = 7.0e-116
Identity = 223/323 (69.04%), Postives = 268/323 (82.97%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K KAKAA KG CFHCN
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCN 270

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 271 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 330

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           WRQL+ GEMT++VGTG+VVSA+A
Sbjct: 331 WRQLETGEMTMRVGTGHVVSAIA 350

[Close]

BLAST of Moc09g30630 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 426.8 bits (1096), Expect = 2.0e-115
Identity = 222/323 (68.73%), Postives = 268/323 (82.97%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K KAKAA KG CFHCN
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCN 270

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 271 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 330

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           W+QL+ GEMT++VGTG+VVSA+A
Sbjct: 331 WQQLETGEMTMRVGTGHVVSAIA 350

[Close]

BLAST of Moc09g30630 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 3.4e-116
Identity = 223/323 (69.04%), Postives = 268/323 (82.97%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K KAKAA KG CFHCN
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCN 270

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 271 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 330

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           WRQL+ GEMT++VGTG+VVSA+A
Sbjct: 331 WRQLETGEMTMRVGTGHVVSAIA 350

[Close]

BLAST of Moc09g30630 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 3.4e-116
Identity = 223/323 (69.04%), Postives = 268/323 (82.97%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K KAKAA KG CFHCN
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCN 270

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 271 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 330

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           WRQL+ GEMT++VGTG+VVSA+A
Sbjct: 331 WRQLETGEMTMRVGTGHVVSAIA 350

[Close]

BLAST of Moc09g30630 vs. ExPASy TrEMBL
Match: A0A5A7TZD7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G001300 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 3.4e-116
Identity = 223/323 (69.04%), Postives = 268/323 (82.97%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 30  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 89

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 90  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 149

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 150 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 209

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K KAKAA KG CFHCN
Sbjct: 210 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCN 269

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 270 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 329

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           WRQL+ GEMT++VGTG+VVSA+A
Sbjct: 330 WRQLETGEMTMRVGTGHVVSAIA 349

[Close]

BLAST of Moc09g30630 vs. ExPASy TrEMBL
Match: A0A5A7UGV2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G002690 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 3.4e-116
Identity = 223/323 (69.04%), Postives = 268/323 (82.97%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K KAKAA KG CFHCN
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KAKAA-KGICFHCN 270

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 271 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 330

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           WRQL+ GEMT++VGTG+VVSA+A
Sbjct: 331 WRQLETGEMTMRVGTGHVVSAIA 350

[Close]

BLAST of Moc09g30630 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 9.8e-116
Identity = 222/323 (68.73%), Postives = 267/323 (82.66%), Query Frame = 0


Query: 63  LVCTVRFVLQEGYPQAPTFNATVAMRNVYDRWIKANDKAKVYMLASIFNVFAKKHEDTVT 122
           ++  +RFVL E  PQ P  NAT  +R  Y+RW KAN+KA+ Y+LAS+  V AKKHE  +T
Sbjct: 31  IIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEVLAKKHESMLT 90

Query: 123 AKEIVDSLQSMFGQPSSQARHEALKFIYNSRIKEGSLVREHVLNMMVHFNVTELNETIID 182
           A+EI+DSLQ MFGQ S Q +H+ALK+IYN+R+ EG+ VREHVLNMMVHFNV E+N  +ID
Sbjct: 91  AREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVID 150

Query: 183 EQSQVSFILKSLPKSFLPFRNNAVINKLKYTLTTLLNELQTYRSLMKSKGQEGEANVSTS 242
           E SQVSFIL+SLP+SFL FR+NAV+NK+ YTLTTLLNELQT+ SLMK KGQ+GEANV+TS
Sbjct: 151 EASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKGQKGEANVATS 210

Query: 243 -KRFHRGSPSRTKSAPSSSGSKTFKKKKAAGKRFKSDSTAAAIKKGKAKAADKGKCFHCN 302
            ++FHRGS S TKS PSSSG+K +KKKK  G+  K++  AA   K K KAA KG CFHCN
Sbjct: 211 TRKFHRGSTSGTKSMPSSSGNKKWKKKK-GGQGNKANLAAAKTTK-KTKAA-KGICFHCN 270

Query: 303 LDGHWKRNCPKYLAEKKKANEGKYDLLVLEICLVKNDDSAWILDSGAINHICSSFQGISS 362
            +GHWKRNCPKYLAEKKKA +GKYDLLVLE CLV+NDDSAWI+DSGA NH+CSSFQGISS
Sbjct: 271 QEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHVCSSFQGISS 330

Query: 363 WRQLDAGEMTLKVGTGYVVSAVA 385
           WRQL+ GEMT++VGTG+VVSA+A
Sbjct: 331 WRQLETGEMTMRVGTGHVVSAIA 350

The following BLAST results are available for this feature:

BLAST of Moc09g30630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048404.1	7.0e-116	69.04	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	7.0e-116	69.04	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0047792.1	7.0e-116	69.04	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0031826.1	7.0e-116	69.04	gag/pol protein [Cucumis melo var. makuwa] >KAA0032384.1 gag/pol protein [Cucumi...	[more]
KAA0044955.1	2.0e-115	68.73	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc09g30630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g30630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	3.4e-116	69.04	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5A7TWB9	3.4e-116	69.04	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5A7TZD7	3.4e-116	69.04	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G0013...	[more]
A0A5A7UGV2	3.4e-116	69.04	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00269...	[more]
A0A5D3CPJ6	9.8e-116	68.73	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]

BLAST of Moc09g30630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 296..312 e-value: 0.0053 score: 25.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 296..312 score: 9.30658
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 94..226 e-value: 3.0E-12 score: 46.5
None	No IPR available	GENE3D	4.10.60.10		coord: 261..325 e-value: 1.3E-6 score: 30.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 229..279
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 84..282
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 84..282
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 281..316

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g30630.1	Moc09g30630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding