Moc09g30540 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g30540
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr9: 22978342 .. 22979146 (-)
RNA-Seq Expression	Moc09g30540
Synteny	Moc09g30540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAACCAGCAAACTCGACCAATACGGCAGATCGAAGGACTCTAGCTGCCAGTGATTTCCACCAGAGGGAGGTCGGAGTCAGTGGTGTAGAGGGGCAAGGTCACGACGGCCTAGCAACAGAACCCCCTCCGCAAGTCGGCACAAATCACCGCGCCTGTCCTACCACCTGCGCACCCCCAAGGACATTCAAGGCCACCCGTGGCCGAGGTGGAACCTCTAAGAAGGGCGCCCGGGGTCTAGCCCCGGCCCCGACAAGTGAGAACTTGGACGCACTCCAGAGAGAAATGGAGGTATGCGCACGAAAATGCGGTCCATGGAGGAAATGTATAACGAAATGATATTGCTGCAGGCGCAGGGTCCCGATCTGAGAACCGAGTGACGCGCGTTGGCATACGCGAGCAAAGGGGGTTCCCACCTCGGCCCAGTCGAGGAGGAACATCCCGAAGGACAACGAGAGAGCGAGGACACACTCGCCAGAGAGGAGACCTCCGTGAACACCTCAACAGAAACAGAGGCTCATCTCTCCGAAAGGACAGTCACCATCATCCGCTCACACAGGAGCTCCAACCAGCAGGCTGAATCCTCTCGCAACCAGTAACTCCTGCAGGAGTGATTACAAGGGAGGAGTCCGACCAGCTGAGGGGCCAGCTCGACGCTCAGGTGGAGGCCTTAAAGGCCAAATGTGAGCAGAAGGAAGGTCCACTGAACGATGGCGACTTGGGAGAATCGCCCTTCACCTCGGACGTTTTGGAAGCACCGATCTCTCCGAAGTTCAAAGCTCCTACCCGTGAAACCTTATGA

mRNA sequence

ATGGTTCAACCAGCAAACTCGACCAATACGGCAGATCGAAGGACTCTAGCTGCCAGTGATTTCCACCAGAGGGAGGTCGGAGTCAGTGGTGTAGAGGGGCAAGGTCACGACGGCCTAGCAACAGAACCCCCTCCGCAAGTCGGCACAAATCACCGCGCCTGTCCTACCACCTGCGCACCCCCAAGGACATTCAAGGCCACCCGTGGCCGAGGTGGAACCTCTAAGAAGGGCGCCCGGGGTCTAGCCCCGGCCCCGACAAGCGCAGGGTCCCGATCTGAGAACCGAGTGACGCGCGTTGGCATACGCGAGCAAAGGGGGTTCCCACCTCGGCCCAGTCGAGGAGGAACATCCCGAAGGACAACGAGAGAGCGAGGACACACTCGCCAGAGAGGAGACCTCCGTGAACACCTCAACAGAAACAGAGGCTCATCTCTCCGAAAGGACAGAGTGATTACAAGGGAGGAGTCCGACCAGCTGAGGGGCCAGCTCGACGCTCAGGTGGAGGCCTTAAAGGCCAAATGTGAGCAGAAGGAAGGTCCACTGAACGATGGCGACTTGGGAGAATCGCCCTTCACCTCGGACGTTTTGGAAGCACCGATCTCTCCGAAGTTCAAAGCTCCTACCCGTGAAACCTTATGA

Coding sequence (CDS)

ATGGTTCAACCAGCAAACTCGACCAATACGGCAGATCGAAGGACTCTAGCTGCCAGTGATTTCCACCAGAGGGAGGTCGGAGTCAGTGGTGTAGAGGGGCAAGGTCACGACGGCCTAGCAACAGAACCCCCTCCGCAAGTCGGCACAAATCACCGCGCCTGTCCTACCACCTGCGCACCCCCAAGGACATTCAAGGCCACCCGTGGCCGAGGTGGAACCTCTAAGAAGGGCGCCCGGGGTCTAGCCCCGGCCCCGACAAGCGCAGGGTCCCGATCTGAGAACCGAGTGACGCGCGTTGGCATACGCGAGCAAAGGGGGTTCCCACCTCGGCCCAGTCGAGGAGGAACATCCCGAAGGACAACGAGAGAGCGAGGACACACTCGCCAGAGAGGAGACCTCCGTGAACACCTCAACAGAAACAGAGGCTCATCTCTCCGAAAGGACAGAGTGATTACAAGGGAGGAGTCCGACCAGCTGAGGGGCCAGCTCGACGCTCAGGTGGAGGCCTTAAAGGCCAAATGTGAGCAGAAGGAAGGTCCACTGAACGATGGCGACTTGGGAGAATCGCCCTTCACCTCGGACGTTTTGGAAGCACCGATCTCTCCGAAGTTCAAAGCTCCTACCCGTGAAACCTTATGA

Protein sequence

MVQPANSTNTADRRTLAASDFHQREVGVSGVEGQGHDGLATEPPPQVGTNHRACPTTCAPPRTFKATRGRGGTSKKGARGLAPAPTSAGSRSENRVTRVGIREQRGFPPRPSRGGTSRRTTRERGHTRQRGDLREHLNRNRGSSLRKDRVITREESDQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPISPKFKAPTRETL

Homology

[Close]

BLAST of Moc09g30540 vs. NCBI nr
Match: XP_022159327.1 (uncharacterized protein LOC111025738 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-33
Identity = 110/239 (46.03%), Postives = 134/239 (56.07%), Query Frame = 0


Query: 1   MVQPANSTNTADRRTLAASDFHQREVGVSGVEGQGHDGLATEPPPQVGTNHRACPTTCAP 60
           MVQP +STNT DRR L A+D HQREVG   VEGQ H+GL TEP      + R      +P
Sbjct: 1   MVQPVDSTNTGDRRALVANDGHQREVGAEVVEGQIHEGLGTEP---FCRSARITTPDLSP 60

Query: 61  --PRTFKATRGRGGTSKKGARGLAPAPT-----SAGSRSENRVTRVGIREQRGFPPRPSR 120
             P+ FKA RGRGG S++   G APAP+     +     E   T++   E+       + 
Sbjct: 61  AHPKPFKANRGRGGASRRTTLGAAPAPSRENFDALQKEMEAMRTQMLTMEEMYNEMVQAV 120

Query: 121 GGTSRRTTRERGHTRQRGDLREHLNRNRGSSLRKDR------------------------ 180
           G  SR  + +R    +RGDLR+HL+R R SSLRK R                        
Sbjct: 121 GAGSR--SEDRAARDERGDLRDHLSRKRSSSLRKGRSPSCSHKNSNQQAESSYNPVVPEG 180

Query: 181 VITREESDQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPISPKFKAPT 209
           VITREE DQL+ + DAQVE LKA+CE K    +DGDLGESPFTSD+LEA I  KFK PT
Sbjct: 181 VITREEFDQLKSKFDAQVETLKARCEVKGSTFDDGDLGESPFTSDILEALIPSKFKTPT 234

[Close]

BLAST of Moc09g30540 vs. NCBI nr
Match: XP_022151719.1 (uncharacterized protein LOC111019634 [Momordica charantia])

HSP 1 Score: 116.7 bits (291), Expect = 2.4e-22
Identity = 78/145 (53.79%), Postives = 87/145 (60.00%), Query Frame = 0


Query: 88  AGSRSENRVTRVGIREQRGFPPRPSRGGTSRRTTRERGHTRQRGDLREHLNRNRGSSLRK 147
           A SRSENRV R  + EQRG    P + G       E  +T QRGDLREHLNR R SSLRK
Sbjct: 21  ARSRSENRVARNDMHEQRGHHLGPVKKGHPEGGEDEE-YTHQRGDLREHLNRKRSSSLRK 80

Query: 148 ------------------------DRVITREESDQLRGQLDAQVEALKAKCEQKEGPLND 207
                                   + VITREE DQL+ + DAQVEALKAKCE+KE   +D
Sbjct: 81  GQSPSCSHRNSNQQAESSYNPITPEGVITREEFDQLKSKFDAQVEALKAKCEKKESSFDD 140

Query: 208 GDLGESPFTSDVLEAPISPKFKAPT 209
           GDLGESPFTSD+LEA I  KFK PT
Sbjct: 141 GDLGESPFTSDILEALIPLKFKTPT 164

[Close]

BLAST of Moc09g30540 vs. NCBI nr
Match: XP_022137317.1 (uncharacterized protein LOC111008813 [Momordica charantia])

HSP 1 Score: 114.4 bits (285), Expect = 1.2e-21
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 150 VITREESDQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPISPKFKAPT 209
           VITREE DQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPI PKFKAPT
Sbjct: 16  VITREEFDQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPIPPKFKAPT 74

[Close]

BLAST of Moc09g30540 vs. NCBI nr
Match: XP_022141796.1 (uncharacterized protein LOC111012081 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-20
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 150 VITREESDQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPISPKFKAPT 209
           +ITREE DQLRGQLDAQ EALKAKCEQKEGPLNDGDLGESPFTSDVLEAPI PKFKAPT
Sbjct: 1   MITREEFDQLRGQLDAQXEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPIPPKFKAPT 59

[Close]

BLAST of Moc09g30540 vs. NCBI nr
Match: XP_022152854.1 (uncharacterized protein LOC111020479 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 3.9e-20
Identity = 83/208 (39.90%), Postives = 96/208 (46.15%), Query Frame = 0


Query: 1   MVQPANSTNTADRRTLAASDFHQREVGVSGVEGQGHDGLATEPPPQVGTNHRACPTTCAP 60
           MVQPANSTNTADRR LAA+  HQREVG   VEGQGH+ L TEP              C  
Sbjct: 1   MVQPANSTNTADRRALAANHGHQREVGAEVVEGQGHEDLGTEP-------------LC-- 60

Query: 61  PRTFKATRGRGGTSKKGARGLAPAPTSAGSRSENRVTRVGIREQRGFPPRPSRGGTSRRT 120
                          + AR   P    A                    P+PS+  +S   
Sbjct: 61  ---------------RSARITTPVLPPA-------------------HPKPSKAESSYNP 120

Query: 121 TRERGHTRQRGDLREHLNRNRGSSLRKDRVITREESDQLRGQLDAQVEALKAKCEQKEGP 180
                                        VITREE DQL+ + DAQVEALKA+CE+KE  
Sbjct: 121 I-------------------------TPGVITREEFDQLKSKFDAQVEALKARCEKKESS 134

Query: 181 LNDGDLGESPFTSDVLEAPISPKFKAPT 209
            +DGDLGE  F+SD+LEA I PKFK PT
Sbjct: 181 FDDGDLGELSFSSDILEALIPPKFKTPT 134

[Close]

BLAST of Moc09g30540 vs. ExPASy TrEMBL
Match: A0A6J1DZJ1 (uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025738 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.7e-34
Identity = 110/239 (46.03%), Postives = 134/239 (56.07%), Query Frame = 0


Query: 1   MVQPANSTNTADRRTLAASDFHQREVGVSGVEGQGHDGLATEPPPQVGTNHRACPTTCAP 60
           MVQP +STNT DRR L A+D HQREVG   VEGQ H+GL TEP      + R      +P
Sbjct: 1   MVQPVDSTNTGDRRALVANDGHQREVGAEVVEGQIHEGLGTEP---FCRSARITTPDLSP 60

Query: 61  --PRTFKATRGRGGTSKKGARGLAPAPT-----SAGSRSENRVTRVGIREQRGFPPRPSR 120
             P+ FKA RGRGG S++   G APAP+     +     E   T++   E+       + 
Sbjct: 61  AHPKPFKANRGRGGASRRTTLGAAPAPSRENFDALQKEMEAMRTQMLTMEEMYNEMVQAV 120

Query: 121 GGTSRRTTRERGHTRQRGDLREHLNRNRGSSLRKDR------------------------ 180
           G  SR  + +R    +RGDLR+HL+R R SSLRK R                        
Sbjct: 121 GAGSR--SEDRAARDERGDLRDHLSRKRSSSLRKGRSPSCSHKNSNQQAESSYNPVVPEG 180

Query: 181 VITREESDQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPISPKFKAPT 209
           VITREE DQL+ + DAQVE LKA+CE K    +DGDLGESPFTSD+LEA I  KFK PT
Sbjct: 181 VITREEFDQLKSKFDAQVETLKARCEVKGSTFDDGDLGESPFTSDILEALIPSKFKTPT 234

[Close]

BLAST of Moc09g30540 vs. ExPASy TrEMBL
Match: A0A6J1DDW5 (uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019634 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-22
Identity = 78/145 (53.79%), Postives = 87/145 (60.00%), Query Frame = 0


Query: 88  AGSRSENRVTRVGIREQRGFPPRPSRGGTSRRTTRERGHTRQRGDLREHLNRNRGSSLRK 147
           A SRSENRV R  + EQRG    P + G       E  +T QRGDLREHLNR R SSLRK
Sbjct: 21  ARSRSENRVARNDMHEQRGHHLGPVKKGHPEGGEDEE-YTHQRGDLREHLNRKRSSSLRK 80

Query: 148 ------------------------DRVITREESDQLRGQLDAQVEALKAKCEQKEGPLND 207
                                   + VITREE DQL+ + DAQVEALKAKCE+KE   +D
Sbjct: 81  GQSPSCSHRNSNQQAESSYNPITPEGVITREEFDQLKSKFDAQVEALKAKCEKKESSFDD 140

Query: 208 GDLGESPFTSDVLEAPISPKFKAPT 209
           GDLGESPFTSD+LEA I  KFK PT
Sbjct: 141 GDLGESPFTSDILEALIPLKFKTPT 164

[Close]

BLAST of Moc09g30540 vs. ExPASy TrEMBL
Match: A0A6J1C7X5 (uncharacterized protein LOC111008813 OS=Momordica charantia OX=3673 GN=LOC111008813 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 57/59 (96.61%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 150 VITREESDQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPISPKFKAPT 209
           VITREE DQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPI PKFKAPT
Sbjct: 16  VITREEFDQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPIPPKFKAPT 74

[Close]

BLAST of Moc09g30540 vs. ExPASy TrEMBL
Match: A0A6J1CKB3 (uncharacterized protein LOC111012081 OS=Momordica charantia OX=3673 GN=LOC111012081 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-21
Identity = 55/59 (93.22%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 150 VITREESDQLRGQLDAQVEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPISPKFKAPT 209
           +ITREE DQLRGQLDAQ EALKAKCEQKEGPLNDGDLGESPFTSDVLEAPI PKFKAPT
Sbjct: 1   MITREEFDQLRGQLDAQXEALKAKCEQKEGPLNDGDLGESPFTSDVLEAPIPPKFKAPT 59

[Close]

BLAST of Moc09g30540 vs. ExPASy TrEMBL
Match: A0A6J1DHB3 (uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020479 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.9e-20
Identity = 83/208 (39.90%), Postives = 96/208 (46.15%), Query Frame = 0


Query: 1   MVQPANSTNTADRRTLAASDFHQREVGVSGVEGQGHDGLATEPPPQVGTNHRACPTTCAP 60
           MVQPANSTNTADRR LAA+  HQREVG   VEGQGH+ L TEP              C  
Sbjct: 1   MVQPANSTNTADRRALAANHGHQREVGAEVVEGQGHEDLGTEP-------------LC-- 60

Query: 61  PRTFKATRGRGGTSKKGARGLAPAPTSAGSRSENRVTRVGIREQRGFPPRPSRGGTSRRT 120
                          + AR   P    A                    P+PS+  +S   
Sbjct: 61  ---------------RSARITTPVLPPA-------------------HPKPSKAESSYNP 120

Query: 121 TRERGHTRQRGDLREHLNRNRGSSLRKDRVITREESDQLRGQLDAQVEALKAKCEQKEGP 180
                                        VITREE DQL+ + DAQVEALKA+CE+KE  
Sbjct: 121 I-------------------------TPGVITREEFDQLKSKFDAQVEALKARCEKKESS 134

Query: 181 LNDGDLGESPFTSDVLEAPISPKFKAPT 209
            +DGDLGE  F+SD+LEA I PKFK PT
Sbjct: 181 FDDGDLGELSFSSDILEALIPPKFKTPT 134

The following BLAST results are available for this feature:

BLAST of Moc09g30540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159327.1	1.8e-33	46.03	uncharacterized protein LOC111025738 [Momordica charantia]	[more]
XP_022151719.1	2.4e-22	53.79	uncharacterized protein LOC111019634 [Momordica charantia]	[more]
XP_022137317.1	1.2e-21	96.61	uncharacterized protein LOC111008813 [Momordica charantia]	[more]
XP_022141796.1	1.0e-20	93.22	uncharacterized protein LOC111012081 [Momordica charantia]	[more]
XP_022152854.1	3.9e-20	39.90	uncharacterized protein LOC111020479 [Momordica charantia]	[more]

BLAST of Moc09g30540 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g30540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DZJ1	8.7e-34	46.03	uncharacterized protein LOC111025738 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DDW5	1.2e-22	53.79	uncharacterized protein LOC111019634 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1C7X5	5.9e-22	96.61	uncharacterized protein LOC111008813 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A6J1CKB3	5.0e-21	93.22	uncharacterized protein LOC111012081 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1DHB3	1.9e-20	39.90	uncharacterized protein LOC111020479 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]

BLAST of Moc09g30540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 174..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..157
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..157

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g30540.1	Moc09g30540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
cellular_component	GO:0016020	membrane