Moc09g27780 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g27780
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Locationchr9: 20812811 .. 20816540 (+)
RNA-Seq ExpressionMoc09g27780
SyntenyMoc09g27780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAAATCTTGGCGCACTCTGTTGTTTTCTTGGACTTGAACTCACTCCATACAGCTCTGGTCTATTTCTCACTCAGACTAAATTCGCTTATGATGTTCGTTGGCGCTTCAGGATGCTCAATGCTAAGTCTTGTGTTTCACCTTGCACCTTAAAGGAGTCTAATGCTCTTTCTGCTAATTGCTCTCCCGCTGACTCTTTCTTATTTCGACAAATGGCGAATGCTCTCTCGTACCTCACCTTTTCTCTTGTATTGAATAAAATCTTTAAAAAATTTATTTGCTCTAATCCAATAAAGTGCCAGAAAGAGGAAAAATCTAAATATATATATATATATATAGTTTTTATCTTGACCATTTGCACTTCAATGAAGCAAAAGAAGCAAAAATAAGGATTGAAATCCATCAAGCAATGTGTTTGTTGAAATTTTTCTCCCTTGAATCTTAGAACATGAATAGGTTGTCAAGGATCTCACATTGAAAATGAACCTAACAAGAGTTTTATAATAGACATGTGCTACTCGTTTTATTGCGAATTGGTTTTGAGATGGAATTCATAAATATTAATACAAGTAGGATTCAAAGTTGGTTTTTCTTGACCCTCAACCTTTTTTCATTTAAAGAACAGAATAGTTTGGGTCTCGTTTGATAATCATTTCGTTTTTAGTTTTTGGTTTTTGATTTTTGGTCTTTACTTTTTAAAAAACAAGATTGTTTGATAACCAATTCAATTTTCTATTTTCTGTTTTTCAAAAACCATTTTGAAATTCAATGTACATCTAAAAAACACTAGTTTTCAAAAACAGGTTTCTGGTTTTTAAAATCTTATTTTTTCTTCTAAAACTCAACTTTTCTTTTTATTTCTCATATTTATCTCTAAAAAATTTCTTTCTCAATCTAAAATTTTTCTTTCTTAATTGCTCTCTACAAAATTTATTTTTCTCTCTAAAATTTTCATATTTTAAATATTTTTTATTATTTATCTCTGTCCAAATTTTTCATCCCTATGTATTTTTCTTTTTTTCTAACAGATCAGTTTCATTTATCTCTCTAAAAATTTAATATTTTCCGAACTTTTTTTATCCCTAACATTTTCTCTTTTGTAATTCTTCTTTCTTTTCCGAACTTAATTTTTCCTCTGAAAATTATATCTTCTTTTCTGGTTCAATTTTATTTTAATGTAATTTTTATTTATCTTGTATTTATTTATTTTCTCTAAAAATTATATTTTGAATCTTTTTTTTATCTTTAAATTTTTTCCACTATAATTTTTTCTCTTTCTTTCTAATTTCTTTTTTTTTTTCTTTAACATATCTTTTCCTCTCGGCTTTATTTTTTTCCTCTAAAAGTTTTCTCTTTTTGTTTTAACTTTTATTTCAATAATTTTTTCTAAATCTTTTTATTTATCTTCCAAAAGTTTATTAACATCTCTCTAAACTTATATTTTCTTGTCTCTACATCAGGGATGACAAAAATTTCTACAAAGTTGGACCCCGCTCCAAGAATAGGAAACGCATGTCTCGACCCTATTCACGATTCGATTTTTTAAATAATAAATATACATTTATTACACTTTTTTAATTTTAAATTCTAATAATAATTAAAATTAATTGTAAAACCAGCAATTTTTTTCAAGAACATCTCTTGGACCGAAGAACAAAGTGGAGACGGTGACTAAAAATTTTCACGAGCATGAGAATGGGAGAGAACATCATCACTTCCACCCACACCATTGTCATCTCTACTTCACTTAGAATTTTCTCTCTAATATTATATTCAATTTTCTAACTTTTTAAAAACATAAAACTAAAAATGGTTACCAAACATGTTTAATTTTCTATTTTAAAAATAAAAAATGGTTATCAAACATATATGGTTTTTGTTTTTTAAAGACATAAAACCAAAAACCAAAAACTAAAAACAAGAAAAACAAGAAAAACAAAAAATCAAAAACAGAAATGGTTATCAAACGGGCCCTTGATATTTCACATTTGATGATGTCCACAAGATGTCTAAAAAACTTAATTTCACGATTTTGGTCAATTTTGGTAAACCCAAAAGCTTTTTGTCTCAACCGTTTTGGTCAATTTAAACAGTTGAGACATTCTCTCTCTCCCTCTCCCTCTCCCTCGCCCTCGCCCTCGCCCTCGCCCTCCTGCTAAAGCTTACATACTCTGCTATAATACTCCAATTGGAGCAAAGAAAGGAAAACAGCTTAATTTTGTTCACACTCCGGAAGATGTTATTTTCTACCCAGCCTCCTTTATTGATTTTTTTTTTATAAGAAATGGGCTTAATTACAAGATTAGAAAGATTCATGGTTATATACAAACTAGCTTCTAAAGGTATAAGAACTGAAAGTTCACTCCCCCAAACTTGAAATGATGAATTGTCCTCAATGCAACTAAGGACAACTAGAATGTAATGTTGTAGCACGCCCCTAAACTTAAAGCGAAACTAGGATAAGAAGTACAAAAAGTGTTCGCTAAGCAGATAAGTATGTGTGTAGGGAAGACGAATGCTAAAATCTAATGGGATCTATAAGAGGTCCAGACTAGTTATACAAAGATAAAGCTGACTTTGGATAGATGGTCATTGAAATTCCTCCCTAAGGTCAGCGCTACTTGGGGCTAGTACTACTAGAGGGATTGCTAGGGCATGGGCAGACAAGCATGAACTAGAAGATGAACAAAAGCAAGCCGACAAATATTCCAGTGCTCCAGCATCAACAGAAAAGACTGTGCATTAGCAGGCTCTAGCATCAAGACTACACACAAATGATAGTTTAAGAGACAGATGTTGAGGACGCAAGATTGCTAAAGCTTTCTTTTTATCATTACTTTCAAGGGGGAATTCACATACTGAACTACAAAAAGAAAAATATGTAAAGAGTCGCTCGTGGGCTGATCTTTCTCTTTGAATCTATCATCTTATTTCCTCTCTTTGTCTCTAGGGCAGGCTCGTGTGAAATAGCTACAGCATACCTCTTCCCCTTAGTTGGGAAAATGAAAATTCTCTTTTTTACCTTTTTGTTTTTCTTGGAAGTGGTGGAGTTGCTCCCACTTGCTCGATTCGTACATTGGCTGATGACTTGAAAGGTTTTGTCTACATCACAGTCCAAAATAATAAAGTCAACAGGGAAAATAAATTTATCTACTTGCAGTAAAACATTCTCGATTTTTCCTTCAGGATATGTGATTGATCGGTCTGCTAACTGCAATGTGACTGTTGTTGGTCGTGCTTCTCCCATTCCTAGCTTTTTGAAGAAGGACAAGGGCATCAGGTTGATACTCGCCCCTAAATCGCATAACGTCTACCCTATCTTCTGTCCTCCAATGGAAACTGGTATGGTAAAGCTCCCAAGATCCTTCATCTTTTCCGGAATTTTGCTTGTAAGGATGGTGCTGCATTCCTTAGTCAATGACCTCGTTTCGTATTCTCCCAGCTTTTTTTTTTGTGAGAATGTCCTTAAGAAATCGCACATAAGTCGGCATTTGCTCTAATGCTTCCACTAACGGTATATTGACATGCAGCTGCTTCCGCACATCAAGGAACTTTCTAAATTGCACATCCTGCTATTTCTTTTGCAACCGCTTTGGGTATGGTGGTGTGTTTTCCAGCCATGTGCAAATATGATACTTCTACATTGGTTGCCCTAGCTTCTACTAAGTTGACCTCTTTGCTTCTGTTGCTGTGTAGTTCCACTACTATCTGCTCGCTACTGTTCATTAA

mRNA sequence

ATGACAAATCTTGGCGCACTCTGTTGTTTTCTTGGACTTGAACTCACTCCATACAGCTCTGGTCTATTTCTCACTCAGACTAAATTCGCTTATGATGTTCGTTGGCGCTTCAGGATGCTCAATGCTAAGTCTTGTGTTTCACCTTGCACCTTAAAGGAGTCTAATGCTCTTTCTGCTAATTGCTCTCCCGCTGACTCTTTCTTATTTCGACAAATGGCGAATGCTCTCTCTGGTGGAGTTGCTCCCACTTGCTCGATTCGTACATTGGCTGATGACTTGAAAGGATATGTGATTGATCGGTCTGCTAACTGCAATGTGACTGTTGTTGGTCGTGCTTCTCCCATTCCTAGCTTTTTGAAGAAGGACAAGGGCATCAGGTTGATACTCGCCCCTAAATCGCATAACGTCTACCCTATCTTCTGTCCTCCAATGGAAACTGGTATGGTAAAGCTCCCAAGATCCTTCATCTTTTCCGGAATTTTGCTTCTGCTTCCGCACATCAAGGAACTTTCTAAATTGCACATCCTGCTATTTCTTTTGCAACCGCTTTGGTTCCACTACTATCTGCTCGCTACTGTTCATTAA

Coding sequence (CDS)

ATGACAAATCTTGGCGCACTCTGTTGTTTTCTTGGACTTGAACTCACTCCATACAGCTCTGGTCTATTTCTCACTCAGACTAAATTCGCTTATGATGTTCGTTGGCGCTTCAGGATGCTCAATGCTAAGTCTTGTGTTTCACCTTGCACCTTAAAGGAGTCTAATGCTCTTTCTGCTAATTGCTCTCCCGCTGACTCTTTCTTATTTCGACAAATGGCGAATGCTCTCTCTGGTGGAGTTGCTCCCACTTGCTCGATTCGTACATTGGCTGATGACTTGAAAGGATATGTGATTGATCGGTCTGCTAACTGCAATGTGACTGTTGTTGGTCGTGCTTCTCCCATTCCTAGCTTTTTGAAGAAGGACAAGGGCATCAGGTTGATACTCGCCCCTAAATCGCATAACGTCTACCCTATCTTCTGTCCTCCAATGGAAACTGGTATGGTAAAGCTCCCAAGATCCTTCATCTTTTCCGGAATTTTGCTTCTGCTTCCGCACATCAAGGAACTTTCTAAATTGCACATCCTGCTATTTCTTTTGCAACCGCTTTGGTTCCACTACTATCTGCTCGCTACTGTTCATTAA

Protein sequence

MTNLGALCCFLGLELTPYSSGLFLTQTKFAYDVRWRFRMLNAKSCVSPCTLKESNALSANCSPADSFLFRQMANALSGGVAPTCSIRTLADDLKGYVIDRSANCNVTVVGRASPIPSFLKKDKGIRLILAPKSHNVYPIFCPPMETGMVKLPRSFIFSGILLLLPHIKELSKLHILLFLLQPLWFHYYLLATVH
Homology
[Close]
BLAST of Moc09g27780 vs. NCBI nr
Match: KAA0056500.1 (photosystem II CP47 reaction center protein-like [Cucumis melo var. makuwa] >TYK29022.1 photosystem II CP47 reaction center protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 7.7e-07
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 0 

Query: 95  GYVIDRSANCNVTVVGRASPIPSFLKKDKGIRLILAPKSHNVYPIFCPPMETGMVKLPRS 154
           G V+D SANC+ TVVG A PIP FLK D  I+LILAP+ H+ +P   P +E  +VKL  S
Sbjct: 22  GCVMDLSANCSATVVGFAFPIPDFLKIDGDIKLILAPRLHSAWPRSIPSIEHRIVKLLSS 81

Query: 155 FIF 158
             F
Sbjct: 82  SPF 84

[Close]
BLAST of Moc09g27780 vs. NCBI nr
Match: XP_022139699.1 (uncharacterized protein LOC111010547 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 1.3e-06
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 1  MTNLGALCCFLGLELTPYSSGLFLTQTKFAYDVRWRFRMLNAKSCVSPCTLKESNALSAN 60
          MT+LGAL  FLGLE++  ++GLF+ + K+  DV  RF ML+AK C +P +L  +  + A+
Sbjct: 1  MTDLGALKYFLGLEISYTNNGLFINEAKYTRDVLQRFGMLSAKPCTTPMSLSSTTDIGAS 60

Query: 61 CSPADSFLFRQMANAL 77
          CS  D   +R +  +L
Sbjct: 61 CSAEDIRNYRSLIGSL 76

[Close]
BLAST of Moc09g27780 vs. NCBI nr
Match: XP_022143496.1 (uncharacterized protein LOC111013373 [Momordica charantia])

HSP 1 Score: 61.6 bits (148), Expect = 8.5e-06
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0 

Query: 1   MTNLGALCCFLGLELTPYSSGLFLTQTKFAYDVRWRFRMLNAKSCVSPCTLKESNALSAN 60
           MT+LGAL  FLGLE++  S G+ + QTK+  D+  RF ML AKSC +P  L  +     +
Sbjct: 118 MTDLGALKYFLGLEISCSSQGILVHQTKYTRDILQRFGMLGAKSCATPLALVTAATTGPS 177

Query: 61  CSPADSFLFRQMANALS 78
           CS  D+  +R +  AL+
Sbjct: 178 CSINDAKNYRALIGALN 194

[Close]
BLAST of Moc09g27780 vs. NCBI nr
Match: XP_022152156.1 (uncharacterized protein LOC111019945 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-05
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 1   MTNLGALCCFLGLELTPYSSGLFLTQTKFAYDVRWRFRMLNAKSCVSPCTLKESNALSAN 60
           MT+LG L  FLGLE+T  S G+ + Q K+  D+  RF ML+AK C +P  L  S+ L   
Sbjct: 121 MTDLGNLHYFLGLEITYTSGGILVNQAKYTRDILKRFGMLSAKPCSTPLALVNSSDLGEP 180

Query: 61  CSPADSFLFRQMANA 76
           CS  D+  +R +  A
Sbjct: 181 CSTEDARNYRSLIGA 195

[Close]
BLAST of Moc09g27780 vs. NCBI nr
Match: XP_020272454.1 (uncharacterized protein LOC109847633 [Asparagus officinalis])

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-04
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 0 

Query: 1  MTNLGALCCFLGLELTPYSSGLFLTQTKFAYDVRWRFRMLNAKSCVSPCTLKESNALSAN 60
          MT+LG L  FLGLE+   ++G+F++Q+K+A D+  RF+M+N K   +P  + ES   +  
Sbjct: 21 MTDLGLLHYFLGLEVNQSANGIFISQSKYAADLLKRFKMMNCKPASTPMNVNESLKANDG 80

Query: 61 CSPADSFLFRQMANALS 78
             A S  FR M   L+
Sbjct: 81 TGSASSKYFRSMIGGLN 97

[Close]
BLAST of Moc09g27780 vs. ExPASy TrEMBL
Match: A0A5D3DZH8 (Photosystem II CP47 reaction center protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001330 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-07
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 0 

Query: 95  GYVIDRSANCNVTVVGRASPIPSFLKKDKGIRLILAPKSHNVYPIFCPPMETGMVKLPRS 154
           G V+D SANC+ TVVG A PIP FLK D  I+LILAP+ H+ +P   P +E  +VKL  S
Sbjct: 22  GCVMDLSANCSATVVGFAFPIPDFLKIDGDIKLILAPRLHSAWPRSIPSIEHRIVKLLSS 81

Query: 155 FIF 158
             F
Sbjct: 82  SPF 84

[Close]
BLAST of Moc09g27780 vs. ExPASy TrEMBL
Match: A0A6J1CDR7 (uncharacterized protein LOC111010547 OS=Momordica charantia OX=3673 GN=LOC111010547 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 6.4e-07
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 0 

Query: 1  MTNLGALCCFLGLELTPYSSGLFLTQTKFAYDVRWRFRMLNAKSCVSPCTLKESNALSAN 60
          MT+LGAL  FLGLE++  ++GLF+ + K+  DV  RF ML+AK C +P +L  +  + A+
Sbjct: 1  MTDLGALKYFLGLEISYTNNGLFINEAKYTRDVLQRFGMLSAKPCTTPMSLSSTTDIGAS 60

Query: 61 CSPADSFLFRQMANAL 77
          CS  D   +R +  +L
Sbjct: 61 CSAEDIRNYRSLIGSL 76

[Close]
BLAST of Moc09g27780 vs. ExPASy TrEMBL
Match: A0A6J1CQE8 (uncharacterized protein LOC111013373 OS=Momordica charantia OX=3673 GN=LOC111013373 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-06
Identity = 33/77 (42.86%), Postives = 47/77 (61.04%), Query Frame = 0 

Query: 1   MTNLGALCCFLGLELTPYSSGLFLTQTKFAYDVRWRFRMLNAKSCVSPCTLKESNALSAN 60
           MT+LGAL  FLGLE++  S G+ + QTK+  D+  RF ML AKSC +P  L  +     +
Sbjct: 118 MTDLGALKYFLGLEISCSSQGILVHQTKYTRDILQRFGMLGAKSCATPLALVTAATTGPS 177

Query: 61  CSPADSFLFRQMANALS 78
           CS  D+  +R +  AL+
Sbjct: 178 CSINDAKNYRALIGALN 194

[Close]
BLAST of Moc09g27780 vs. ExPASy TrEMBL
Match: A0A6J1DGS4 (uncharacterized protein LOC111019945 OS=Momordica charantia OX=3673 GN=LOC111019945 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = 0 

Query: 1   MTNLGALCCFLGLELTPYSSGLFLTQTKFAYDVRWRFRMLNAKSCVSPCTLKESNALSAN 60
           MT+LG L  FLGLE+T  S G+ + Q K+  D+  RF ML+AK C +P  L  S+ L   
Sbjct: 121 MTDLGNLHYFLGLEITYTSGGILVNQAKYTRDILKRFGMLSAKPCSTPLALVNSSDLGEP 180

Query: 61  CSPADSFLFRQMANA 76
           CS  D+  +R +  A
Sbjct: 181 CSTEDARNYRSLIGA 195

[Close]
BLAST of Moc09g27780 vs. ExPASy TrEMBL
Match: A0A392PAT4 (Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0029996 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 0 

Query: 95  GYVIDRSANCNVTVVGRASPIPSFLKKDKGIRLILAPKSHNVYPIFCPPMETGMVKLPRS 154
           G+ + RS   NV +V   SP  SF + + GI+L LAP+S +  PI+ PP+  G+VKLP S
Sbjct: 45  GWTLVRSTRMNVILVSLTSPQFSFFRMESGIKLTLAPRSSSDLPIYTPPIVHGIVKLPGS 104

[Close]
BLAST of Moc09g27780 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 7.7e-05
Identity = 28/76 (36.84%), Postives = 44/76 (57.89%), Query Frame = 0 

Query: 1   MTNLGALCCFLGLELTPYSSGLFLTQTKFAYDVRWRFRMLNAKSCVSPCTLKESNALSAN 60
           M +LG +  FLG+++  + SGLFL+QTK+A  +     ML+ K   +P  LK ++++S  
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTA 92

Query: 61  CSPADSFLFRQMANAL 77
             P D   FR +  AL
Sbjct: 93  KYP-DPSDFRSIVGAL 107

The following BLAST results are available for this feature:
BLAST of Moc09g27780 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0056500.17.7e-0753.97photosystem II CP47 reaction center protein-like [Cucumis melo var. makuwa] >TYK... [more]
XP_022139699.11.3e-0642.11uncharacterized protein LOC111010547 [Momordica charantia][more]
XP_022143496.18.5e-0642.86uncharacterized protein LOC111013373 [Momordica charantia][more]
XP_022152156.14.2e-0542.67uncharacterized protein LOC111019945 [Momordica charantia][more]
XP_020272454.11.6e-0438.96uncharacterized protein LOC109847633 [Asparagus officinalis][more]
BLAST of Moc09g27780 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g27780 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DZH83.7e-0753.97Photosystem II CP47 reaction center protein-like OS=Cucumis melo var. makuwa OX=... [more]
A0A6J1CDR76.4e-0742.11uncharacterized protein LOC111010547 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A6J1CQE84.1e-0642.86uncharacterized protein LOC111013373 OS=Momordica charantia OX=3673 GN=LOC111013... [more]
A0A6J1DGS42.0e-0542.67uncharacterized protein LOC111019945 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A392PAT41.0e-0445.00Uncharacterized protein (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0029996... [more]
BLAST of Moc09g27780 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00810.17.7e-0536.84DNA/RNA polymerases superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g27780.1Moc09g27780.1mRNA