Moc09g27450 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g27450
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionIntegrase catalytic domain-containing protein
Locationchr9: 20548421 .. 20549125 (-)
RNA-Seq ExpressionMoc09g27450
SyntenyMoc09g27450
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAATCTCGTGGCGAAATAAATGACTGCGAAAGCATTGTTGTAGTCTTTGCAAGCCAGGTATGGAAAACTTTATGCCGATACAAAAATATTCTCTGGGTGAAGTATTTCAACATCCACATGGAGGAGGAAACTTTGATGAATTCCCACATTGGTGTTGCGAGATGTCAATATATTCCTAACTTCAGATTTAATTTGTTATCTGTAGGGAAGCCAGATGATGATGGCTACAGCAGTGAGTTTGTTTGGGGTTGCTGGAAGCTCAAGAGGAAATCTGGGGTAGTGGTGATAGGTCACAAGAGATCTTCTGTTTATGTGTCTGAGTTTGCGGTTTCCAAGGGATCTGAGAGACAGAGAATGCACAGGGCTATAGATGGTTCAGGGCGAGATTTGAAAGAATCAGCAGAATTGTCAGTCAGGATAGATCAGGAGAATCTACCATCAGTTCAAGTACAACACTTGGAAAGTAGAAGAAAGGGAAAGGGGAACAACTCAGTGAGGTGTTTAGTAGACTGTCGGGATAATACCCTGGTTGTCAGACGGATGAGCGAGCTAATGAAGTCGCATAGGCGAGAGAGTGCATCAAGGAGGAAGACTACAATTGGTATTGAAGTTAAGGGTAATGTCTCTAGTGTAGCAACAAACTGGGTGGGAGTGCCAAGTCATCAGGGGAATCTTTCTTCAGAGGTTGTTGGGTTCGATTGA

mRNA sequence

ATGCAATCTCGTGGCGAAATAAATGACTGCGAAAGCATTGTTGTAGTCTTTGCAAGCCAGGTATGGAAAACTTTATGCCGATACAAAAATATTCTCTGGGTGAAGTATTTCAACATCCACATGGAGGAGGAAACTTTGATGAATTCCCACATTGGTGTTGCGAGATGTCAATATATTCCTAACTTCAGATTTAATTTGTTATCTGTAGGGAAGCCAGATGATGATGGCTACAGCAGTGAGTTTGTTTGGGGTTGCTGGAAGCTCAAGAGGAAATCTGGGGTAGTGGTGATAGGTCACAAGAGATCTTCTGTTTATGTGTCTGAGTTTGCGGTTTCCAAGGGATCTGAGAGACAGAGAATGCACAGGGCTATAGATGGTTCAGGGCGAGATTTGAAAGAATCAGCAGAATTGTCAGTCAGGATAGATCAGGAGAATCTACCATCAGTTCAAGTACAACACTTGGAAAGTAGAAGAAAGGGAAAGGGGAACAACTCAGTGAGGTGTTTAGTAGACTGTCGGGATAATACCCTGGTTGTCAGACGGATGAGCGAGCTAATGAAGTCGCATAGGCGAGAGAGTGCATCAAGGAGGAAGACTACAATTGGTATTGAAGTTAAGGGTAATGTCTCTAGTGTAGCAACAAACTGGGTGGGAGTGCCAAGTCATCAGGGGAATCTTTCTTCAGAGGTTGTTGGGTTCGATTGA

Coding sequence (CDS)

ATGCAATCTCGTGGCGAAATAAATGACTGCGAAAGCATTGTTGTAGTCTTTGCAAGCCAGGTATGGAAAACTTTATGCCGATACAAAAATATTCTCTGGGTGAAGTATTTCAACATCCACATGGAGGAGGAAACTTTGATGAATTCCCACATTGGTGTTGCGAGATGTCAATATATTCCTAACTTCAGATTTAATTTGTTATCTGTAGGGAAGCCAGATGATGATGGCTACAGCAGTGAGTTTGTTTGGGGTTGCTGGAAGCTCAAGAGGAAATCTGGGGTAGTGGTGATAGGTCACAAGAGATCTTCTGTTTATGTGTCTGAGTTTGCGGTTTCCAAGGGATCTGAGAGACAGAGAATGCACAGGGCTATAGATGGTTCAGGGCGAGATTTGAAAGAATCAGCAGAATTGTCAGTCAGGATAGATCAGGAGAATCTACCATCAGTTCAAGTACAACACTTGGAAAGTAGAAGAAAGGGAAAGGGGAACAACTCAGTGAGGTGTTTAGTAGACTGTCGGGATAATACCCTGGTTGTCAGACGGATGAGCGAGCTAATGAAGTCGCATAGGCGAGAGAGTGCATCAAGGAGGAAGACTACAATTGGTATTGAAGTTAAGGGTAATGTCTCTAGTGTAGCAACAAACTGGGTGGGAGTGCCAAGTCATCAGGGGAATCTTTCTTCAGAGGTTGTTGGGTTCGATTGA

Protein sequence

MQSRGEINDCESIVVVFASQVWKTLCRYKNILWVKYFNIHMEEETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSERQRMHRAIDGSGRDLKESAELSVRIDQENLPSVQVQHLESRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRESASRRKTTIGIEVKGNVSSVATNWVGVPSHQGNLSSEVVGFD
Homology
BLAST of Moc09g27450 vs. NCBI nr
Match: XP_022152155.1 (cinnamoyl-CoA reductase-like SNL6 [Momordica charantia])

HSP 1 Score: 92.0 bits (227), Expect = 7.1e-15
Identity = 63/135 (46.67%), Postives = 79/135 (58.52%), Query Frame = 0

Query: 94  VVVIGHKRSSVYVSEFAVSKGSERQRMHRAID-GSGRDLKESAELSVRIDQENLPSVQVQ 153
           VV  GHKRS VYVSEF V+KGS RQ MH+ +  GS R L+  A L  + DQ+NLPS QV+
Sbjct: 2   VVATGHKRSYVYVSEFEVAKGSLRQTMHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVK 61

Query: 154 HLESRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRESASRRKTTIGIEVKGNVSSV 213
            L S +KG  N     L+  R +T  VR + EL+KSHRR SA        ++  G++SSV
Sbjct: 62  QLRSTKKGNEN-----LIGHRVHTSAVRCLGELVKSHRRISA--------LKGTGSISSV 121

Query: 214 ATNWVGVPSHQGNLS 228
           AT   G     G  S
Sbjct: 122 ATYLSGSAKSSGESS 123

BLAST of Moc09g27450 vs. NCBI nr
Match: XP_022157059.1 (uncharacterized protein LOC111023870 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 1.8e-10
Identity = 66/172 (38.37%), Postives = 76/172 (44.19%), Query Frame = 0

Query: 57  QYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSSVYVSEFAVSKGSE 116
           +YIP+FRFNLLSVGK                                    E     GS 
Sbjct: 31  RYIPSFRFNLLSVGK-----------------------------------LETMAIAGSL 90

Query: 117 RQRMHR-AIDGSGRDLKESAELSVRIDQENLPSVQVQHLESRRKGKGNNSVRCLVDCRDN 176
           RQ MHR A D SGRDLK    L  R DQ+NLPS  V+ L S  KG  N     L+  + +
Sbjct: 91  RQTMHRVATDSSGRDLKGPTTLMARTDQKNLPSAHVKQLRSTEKGNEN-----LIGHQVH 150

Query: 177 TLVVRRMSELMKSHRRESASRRKTTIGIEVKGNVSSVATNWVGVPSHQGNLS 228
           T  VRR  EL+KSHRR SA         +  G VSSV T+  G     G  S
Sbjct: 151 TSAVRRSGELVKSHRRISA--------FKGTGFVSSVVTDLGGSAKSSGESS 154

BLAST of Moc09g27450 vs. NCBI nr
Match: KAG8385976.1 (hypothetical protein BUALT_Bualt03G0101100 [Buddleja alternifolia])

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-06
Identity = 33/94 (35.11%), Postives = 56/94 (59.57%), Query Frame = 0

Query: 38  NIHMEEETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVI 97
           NI++E +T     + +   ++IP+ RFN++S GK DDDGY S F  G WKL + S +   
Sbjct: 215 NINLETDT--GCRLILRDVRHIPDIRFNIISTGKLDDDGYVSNFGEGKWKLTKGSLITAK 274

Query: 98  GHKRSSVYVSEFAVSKGSERQRMHRAIDGSGRDL 132
           G K++S+Y+ +  +S G     ++ A++ S  +L
Sbjct: 275 GKKKNSLYLMQAKLSNG----EVNAAVNNSSIEL 302

BLAST of Moc09g27450 vs. NCBI nr
Match: PNX95528.1 (putative gag/pol polyprotein [Trifolium pratense])

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-06
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 44  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSS 103
           ET   + + +   ++IP  RFNLLSVG+ D++GY + F    WKLK+ S VV  G K S+
Sbjct: 345 ETSNETTLVLKGVKHIPELRFNLLSVGELDNEGYDNSFSENEWKLKKGSMVVAKGKKNSN 404

Query: 104 VYVSEFAVSK 114
           +YV +  VSK
Sbjct: 405 LYVVQLGVSK 414

BLAST of Moc09g27450 vs. NCBI nr
Match: KAG8376937.1 (hypothetical protein BUALT_Bualt09G0116000 [Buddleja alternifolia])

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-06
Identity = 33/94 (35.11%), Postives = 55/94 (58.51%), Query Frame = 0

Query: 38  NIHMEEETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVI 97
           NI++E +T     + +   ++IPN R N++S GK DDDGY S F  G WKL + S +   
Sbjct: 193 NINLETDT--GCRLILRDVRHIPNIRLNIISTGKLDDDGYVSNFGEGKWKLTKVSLITAK 252

Query: 98  GHKRSSVYVSEFAVSKGSERQRMHRAIDGSGRDL 132
           G K++S+Y+ +  +S G     ++ A++ S  +L
Sbjct: 253 GKKKNSLYLMQAKLSNG----EVNAAVNNSSIEL 280

BLAST of Moc09g27450 vs. ExPASy TrEMBL
Match: A0A6J1DD48 (cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.4e-15
Identity = 63/135 (46.67%), Postives = 79/135 (58.52%), Query Frame = 0

Query: 94  VVVIGHKRSSVYVSEFAVSKGSERQRMHRAID-GSGRDLKESAELSVRIDQENLPSVQVQ 153
           VV  GHKRS VYVSEF V+KGS RQ MH+ +  GS R L+  A L  + DQ+NLPS QV+
Sbjct: 2   VVATGHKRSYVYVSEFEVAKGSLRQTMHKVVAYGSRRYLRRPAALMAKTDQKNLPSPQVK 61

Query: 154 HLESRRKGKGNNSVRCLVDCRDNTLVVRRMSELMKSHRRESASRRKTTIGIEVKGNVSSV 213
            L S +KG  N     L+  R +T  VR + EL+KSHRR SA        ++  G++SSV
Sbjct: 62  QLRSTKKGNEN-----LIGHRVHTSAVRCLGELVKSHRRISA--------LKGTGSISSV 121

Query: 214 ATNWVGVPSHQGNLS 228
           AT   G     G  S
Sbjct: 122 ATYLSGSAKSSGESS 123

BLAST of Moc09g27450 vs. ExPASy TrEMBL
Match: A0A2K3MXK1 (Putative gag/pol polyprotein OS=Trifolium pratense OX=57577 GN=L195_g018721 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 44  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSS 103
           ET   + + +   ++IP  RFNLLSVG+ D++GY + F    WKLK+ S VV  G K S+
Sbjct: 345 ETSNETTLVLKGVKHIPELRFNLLSVGELDNEGYDNSFSENEWKLKKGSMVVAKGKKNSN 404

Query: 104 VYVSEFAVSK 114
           +YV +  VSK
Sbjct: 405 LYVVQLGVSK 414

BLAST of Moc09g27450 vs. ExPASy TrEMBL
Match: A0A4Y1QXT8 (gag_pre-integrs domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_005502 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 29/98 (29.59%), Postives = 53/98 (54.08%), Query Frame = 0

Query: 44  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSS 103
           ET  + H+ +   +++PN   NL+S G  DD+GY++ F  G WKL + S ++  G K ++
Sbjct: 148 ETNTSCHLVLKDVRHVPNMHLNLISTGLLDDEGYTNVFAKGKWKLSKNSLILAQGKKENT 207

Query: 104 VYVSEFAVSKGSERQRMHRAIDGSGRDLKESAELSVRI 142
           +Y++   VS G        +I+   + L   +E  ++I
Sbjct: 208 IYMTHVKVSNGYVNALAENSIELWHKRLDHMSEKGLQI 245

BLAST of Moc09g27450 vs. ExPASy TrEMBL
Match: A0A4Y1QYG0 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_005862 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 44  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSS 103
           ET  + H+ +   +++P+ R NL+S G  DD+GY++ F  G WKL + S V+  G K ++
Sbjct: 349 ETNTSCHLVLKDVRHVPDMRLNLISTGLLDDEGYTNVFAEGKWKLSKNSLVLARGKKENT 408

Query: 104 VYVSEFAVSKG 115
           +Y++   VS G
Sbjct: 409 LYMTHAKVSNG 419

BLAST of Moc09g27450 vs. ExPASy TrEMBL
Match: A0A4Y1R5B0 (Integrase catalytic domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_009010 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.4e-05
Identity = 26/71 (36.62%), Postives = 44/71 (61.97%), Query Frame = 0

Query: 44  ETLMNSHIGVARCQYIPNFRFNLLSVGKPDDDGYSSEFVWGCWKLKRKSGVVVIGHKRSS 103
           ET  + H+ +   +++P+ R NL+S G  DD+GY++ F  G WKL + S V+  G K ++
Sbjct: 334 ETNTSCHLVLKDVRHVPDMRLNLISTGLLDDEGYTNVFAEGKWKLSKNSLVLARGKKENT 393

Query: 104 VYVSEFAVSKG 115
           +Y++   VS G
Sbjct: 394 LYMTHAKVSNG 404

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022152155.17.1e-1546.67cinnamoyl-CoA reductase-like SNL6 [Momordica charantia][more]
XP_022157059.11.8e-1038.37uncharacterized protein LOC111023870 [Momordica charantia][more]
KAG8385976.13.5e-0635.11hypothetical protein BUALT_Bualt03G0101100 [Buddleja alternifolia][more]
PNX95528.13.5e-0644.29putative gag/pol polyprotein [Trifolium pratense][more]
KAG8376937.14.6e-0635.11hypothetical protein BUALT_Bualt09G0116000 [Buddleja alternifolia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DD483.4e-1546.67cinnamoyl-CoA reductase-like SNL6 OS=Momordica charantia OX=3673 GN=LOC111019944... [more]
A0A2K3MXK11.7e-0644.29Putative gag/pol polyprotein OS=Trifolium pratense OX=57577 GN=L195_g018721 PE=4... [more]
A0A4Y1QXT81.1e-0529.59gag_pre-integrs domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_0055... [more]
A0A4Y1QYG01.4e-0536.62Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_005862 PE=4 SV=1[more]
A0A4Y1R5B01.4e-0536.62Integrase catalytic domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g27450.1Moc09g27450.1mRNA