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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCTAGAATCAAATACAAGGCGAATAGGAAAAGTGTATTGAAGCTGGAACTCGCAGTAAGCTCTGGGTCGAGCGGCAACTTCAAGGAGGCCACTGAAACCATCCCATCGAAGGCCTCTGATGAACAGAGCCCCGCCCAGCAAAGCCCCACCAGCTCGGAACATACTTCGGCTGACGCTGAGTTTCCGCCACCGCCTTCTCTTGTCGTCAGCCTTCGGGTAAATGTCCCTTACCCTACTACCTCCTCCTCTCAGACGCAGCCTGACAAGCCCTTACCTGCCAGCGAAGGCCCAGAAAAACTCACCGCTCATCCTCCTCTCACTGAAAACCCTCCCGCATTACTAACAATCCACCCCCTCCACCCACCCTTCCATAGACTCCATAACCCTCGACCACCCCTTCCTCAACTTCCACCATCCCTCCATCTATCCTCATAGAAGAAATCAATCCTCCCCTCGAAATCCACACCTCCTAATGGACCAGCTTCGCGAACTCGAAAGAGCAACTGACCAGCCCAATCTGTCCCAAGCCCCAACCCGGCTCAAAAAAGGAAAACACCAAAAGTGCCTCCCCCACCCCTGTCAAAGCAAAAGCCACAAAATTCGATTATGCATCTGAAGGGAAGTGTCGCACCCGGATGGTCTCATTTTCCCAAATTCCTCCAACATCGAGCTCCTTCTAGCGCATCACGGTGGTCCCTGCTGGCCAGGCGGCGATCCAGAAGTTCGTTGATCCAGAGGCGAGAGCGAGCTATAGAGTGATAAAGACAAGGGACTTGTACCCTGGAAAAAGGGTTTTTGGAGGCGGAGATGCCCCAACTTGTGAAGGATAG mRNA sequence ATGCCTAGAATCAAATACAAGGCGAATAGGAAAAGTGTATTGAAGCTGGAACTCGCAGTAAGCTCTGGGTCGAGCGGCAACTTCAAGGAGGCCACTGAAACCATCCCATCGAAGGCCTCTGATGAACAGAGCCCCGCCCAGCAAAGCCCCACCAGCTCGGAACATACTTCGGCTGACGCTGAGTTTCCGCCACCGCCTTCTCTTGTCGTCAGCCTTCGGCGCATCACGGTGGTCCCTGCTGGCCAGGCGGCGATCCAGAAGTTCGTTGATCCAGAGGCGAGAGCGAGCTATAGAGTGATAAAGACAAGGGACTTGTACCCTGGAAAAAGGGTTTTTGGAGGCGGAGATGCCCCAACTTGTGAAGGATAG Coding sequence (CDS) ATGCCTAGAATCAAATACAAGGCGAATAGGAAAAGTGTATTGAAGCTGGAACTCGCAGTAAGCTCTGGGTCGAGCGGCAACTTCAAGGAGGCCACTGAAACCATCCCATCGAAGGCCTCTGATGAACAGAGCCCCGCCCAGCAAAGCCCCACCAGCTCGGAACATACTTCGGCTGACGCTGAGTTTCCGCCACCGCCTTCTCTTGTCGTCAGCCTTCGGCGCATCACGGTGGTCCCTGCTGGCCAGGCGGCGATCCAGAAGTTCGTTGATCCAGAGGCGAGAGCGAGCTATAGAGTGATAAAGACAAGGGACTTGTACCCTGGAAAAAGGGTTTTTGGAGGCGGAGATGCCCCAACTTGTGAAGGATAG Protein sequence MPRIKYKANRKSVLKLELAVSSGSSGNFKEATETIPSKASDEQSPAQQSPTSSEHTSADAEFPPPPSLVVSLRRITVVPAGQAAIQKFVDPEARASYRVIKTRDLYPGKRVFGGGDAPTCEG
Homology
BLAST of Moc09g17440 vs. NCBI nr
Match: XP_022154805.1 (extensin-like [Momordica charantia]) HSP 1 Score: 79.3 bits (194), Expect = 2.5e-11 Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0 Query: 1 MPRIKYKANRKSVLKLELAVSSGSSGNFKEATETIPSKASDEQSPAQQSPTSSEHTSADA 60 MPRIK++ANRK LKLEL+ SSGS+G+FKEA ETIPS+A +E QSPTSSEHT +A Sbjct: 1 MPRIKHRANRKRTLKLELSASSGSNGDFKEAAETIPSEAIEE-----QSPTSSEHTPTEA 60
Query: 61 EFPPPPSLVVS 72 E PPP V S Sbjct: 61 EILPPPPPVAS 66
BLAST of Moc09g17440 vs. ExPASy TrEMBL
Match: A0A6J1DKP0 (extensin-like OS=Momordica charantia OX=3673 GN=LOC111021971 PE=4 SV=1) HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11 Identity = 46/71 (64.79%), Postives = 54/71 (76.06%), Query Frame = 0 Query: 1 MPRIKYKANRKSVLKLELAVSSGSSGNFKEATETIPSKASDEQSPAQQSPTSSEHTSADA 60 MPRIK++ANRK LKLEL+ SSGS+G+FKEA ETIPS+A +E QSPTSSEHT +A Sbjct: 1 MPRIKHRANRKRTLKLELSASSGSNGDFKEAAETIPSEAIEE-----QSPTSSEHTPTEA 60
Query: 61 EFPPPPSLVVS 72 E PPP V S Sbjct: 61 EILPPPPPVAS 66
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022154805.1 | 2.5e-11 | 64.79 | extensin-like [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DKP0 | 1.2e-11 | 64.79 | extensin-like OS=Momordica charantia OX=3673 GN=LOC111021971 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 21..67 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 21..58 |
Relationships
The following mRNA feature(s) are a part of this gene:
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