Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCAAATTATGTGAGGTTCCTGAAAGAGATACTCACAAAGAAGAGAACGCTGGGAGAGTATGAAACTGTAGCAATGACTAAAGCTTGCAGCACCATACTCACGAGCAAGATTCCTGCAAAGATGAAAGATCCTGGGAGTTTTACCATACCAGTTTCAATTGGAGGACAACATATAGGACTTGCCTTATGTGATCTAGGCGCCAGCATCAAGCTCTGTCATTATTAATTTACAACAAGTTGGGCATTGGAAAAGCAAGACCCACAATAGTGACATTGCAGCTGGCAGATCGATCCATTACGCATCCAGACGGAAAAATTGAAGACTTTTAGTACAAGTAGATAAATTTATTTTCCCTACTAACATCATTATTTTAGATTTTGATGTAGATAAGGAGGTTCCTATTATTCTTGGAAGACCATTCCTCGTAACTGGGAGAGTGTTGGTAGATGTCCACAAAAGAGAGCTGACAATGAGTGTGCAGGATCAAGATGCGAAATTTTCAGTGCATCGCTCTATGAAATTTCCTACCGAATCATAAGAGCGCTCAATATTAAAGATATTGGATGAAGCATTAATGGAGGAGTTGGAAGCAGAAGCCATGTTGGAGCATCTAGAAGCAGTTGACACTGAAAGTCTTACCGATGCATTTGAAGAGGAACTAGAAGATGTCCAGTCAGAATGCATAAATGCCAATGAAGGATTTGTGAAGAGAATGTATGAGTCCTTAGACCTCACAAACTCGCAGCTTAGATTACTAAAGCCATCTATTGAAGAGCCGCCAATGCTGGAGCTTAAAGCATTGCCGCAGCATCTGAAACATGCTTACCTGGGTTCATCAGAGACATTGGCAATTATCATAGCAGCAGACTTACCCTTGGAAAAGGAGTAG
mRNA sequence
ATGCCAAATTATGTGAGGTTCCTGAAAGAGATACTCACAAAGAAGAGAACGCTGGGAGAGTATGAAACTGTAGCAATGACTAAAGCTTGCAGCACCATACTCACGAGCAAGATTCCTGCAAAGATGAAAGATCCTGGGAGTTTTACCATACCAGTTTCAATTGGAGGACAACATATAGGACTTGCCTTATGTGATCTAGGCGCCAGCATCAAGCTCTATAAGGAGGTTCCTATTATTCTTGGAAGACCATTCCTCGTAACTGGGAGAGTGTTGGTAGATGTCCACAAAAGAGAGCTGACAATGAGTATATTGGATGAAGCATTAATGGAGGAGTTGGAAGCAGAAGCCATGTTGGAGCATCTAGAAGCAGTTGACACTGAAAGTCTTACCGATGCATTTGAAGAGGAACTAGAAGATGTCCAGTCAGAATGCATAAATGCCAATGAAGGATTTGTGAAGAGAATGTATGAGTCCTTAGACCTCACAAACTCGCAGCTTAGATTACTAAAGCCATCTATTGAAGAGCCGCCAATGCTGGAGCTTAAAGCATTGCCGCAGCATCTGAAACATGCTTACCTGGGTTCATCAGAGACATTGGCAATTATCATAGCAGCAGACTTACCCTTGGAAAAGGAGTAG
Coding sequence (CDS)
ATGCCAAATTATGTGAGGTTCCTGAAAGAGATACTCACAAAGAAGAGAACGCTGGGAGAGTATGAAACTGTAGCAATGACTAAAGCTTGCAGCACCATACTCACGAGCAAGATTCCTGCAAAGATGAAAGATCCTGGGAGTTTTACCATACCAGTTTCAATTGGAGGACAACATATAGGACTTGCCTTATGTGATCTAGGCGCCAGCATCAAGCTCTATAAGGAGGTTCCTATTATTCTTGGAAGACCATTCCTCGTAACTGGGAGAGTGTTGGTAGATGTCCACAAAAGAGAGCTGACAATGAGTATATTGGATGAAGCATTAATGGAGGAGTTGGAAGCAGAAGCCATGTTGGAGCATCTAGAAGCAGTTGACACTGAAAGTCTTACCGATGCATTTGAAGAGGAACTAGAAGATGTCCAGTCAGAATGCATAAATGCCAATGAAGGATTTGTGAAGAGAATGTATGAGTCCTTAGACCTCACAAACTCGCAGCTTAGATTACTAAAGCCATCTATTGAAGAGCCGCCAATGCTGGAGCTTAAAGCATTGCCGCAGCATCTGAAACATGCTTACCTGGGTTCATCAGAGACATTGGCAATTATCATAGCAGCAGACTTACCCTTGGAAAAGGAGTAG
Protein sequence
MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIGLALCDLGASIKLYKEVPIILGRPFLVTGRVLVDVHKRELTMSILDEALMEELEAEAMLEHLEAVDTESLTDAFEEELEDVQSECINANEGFVKRMYESLDLTNSQLRLLKPSIEEPPMLELKALPQHLKHAYLGSSETLAIIIAADLPLEKE
Homology
BLAST of Moc09g17430 vs. NCBI nr
Match:
XP_022144016.1 (uncharacterized protein LOC111013805 [Momordica charantia])
HSP 1 Score: 216.9 bits (551), Expect = 1.7e-52
Identity = 132/246 (53.66%), Postives = 144/246 (58.54%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
MPNYVRFLKEILTKKR LGEYE VAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQ IG
Sbjct: 162 MPNYVRFLKEILTKKRMLGEYEIVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQQIG 221
Query: 61 LALCDLGASIKLY----------------------------------------------- 120
L LCD+GASI +
Sbjct: 222 LTLCDMGASINIMPLSIYNKLGIREARPTTVTLQLADRSITHPEGKIEDVSVQVEKFSFP 281
Query: 121 -----------KEVPIILGRPFLVTGRVLVDVHKRELTM--------------------- 162
KEVPIILGRPFL TGR LVDV+K ELTM
Sbjct: 282 ADFIILDYDAAKEVPIILGRPFLATGRALVDVNKGELTMHVQDQEVKFSVHNSMKFSAES 341
BLAST of Moc09g17430 vs. NCBI nr
Match:
XP_022157452.1 (uncharacterized protein LOC111024147 [Momordica charantia])
HSP 1 Score: 190.7 bits (483), Expect = 1.3e-44
Identity = 121/232 (52.16%), Postives = 142/232 (61.21%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
MP YV+F K++LTK+R LGE+ETV +TK C TILTSKIP KMKD GSFTIPVSIGG IG
Sbjct: 129 MPTYVKF-KDVLTKERRLGEFETVCLTKECRTILTSKIPQKMKDSGSFTIPVSIGGHKIG 188
Query: 61 LALCDLGASIKL--------------------YKEVPIILGRPFLVTGRVLVDVHKRELT 120
ALCDLGASI L ++EVPIILGRPFL G LVDVHK +T
Sbjct: 189 QALCDLGASINLVPLTVYQKLGMGAVKPMTVTHEEVPIILGRPFLAKGNALVDVHKGVVT 248
Query: 121 MSILDEALMEELEAEAMLEHLEAVDTESLTDAFEEELEDVQSECINANEGFVKRMYESLD 180
M + LE EAML+ E E + +E+ + S R +E L
Sbjct: 249 MR------NKNLELEAMLQKAEDFYYEVFSIDGGKEITNSWS-----------RTHEDLK 308
Query: 181 LTNSQLRLLKPSIEEPPMLELKALPQHLKHAYLGSSETLAIIIAADLPLEKE 213
L + LKPS+EEPP LELKALPQHLK+AYLG + TL IIIAA+L KE
Sbjct: 309 LEEVNQKQLKPSVEEPPKLELKALPQHLKYAYLGVANTLPIIIAANLLKNKE 342
BLAST of Moc09g17430 vs. NCBI nr
Match:
XP_024028757.1 (uncharacterized protein LOC112093792 [Morus notabilis])
HSP 1 Score: 182.2 bits (461), Expect = 4.7e-42
Identity = 120/292 (41.10%), Postives = 157/292 (53.77%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
MP+YV+F+K+ILTKKR LGE+ETVA+T+ CS IL +++P K+KDPGSFTIP SIG Q+IG
Sbjct: 363 MPSYVKFMKDILTKKRRLGEFETVALTEECSAILKNRLPPKLKDPGSFTIPCSIGDQYIG 422
Query: 61 LALCDLGASIKLY----------------------------------------------- 120
ALCDLGASI L
Sbjct: 423 KALCDLGASINLMPMSIFRKLGIGEVSPTTVTLQLADRSYAHPEGKIEDVLVRVDKFIFP 482
Query: 121 -----------KEVPIILGRPFLVTGRVLVDVHKRELTMSILDEAL-------------M 180
KEVPIILGRPFL TG+ L+DV K ELTM + D+ + +
Sbjct: 483 ADFIVLDYEADKEVPIILGRPFLATGKTLIDVQKGELTMRVHDQQVTFNVFKAMRFTDEV 542
Query: 181 EELEAEAMLEHLEAVDTESL--------TDAFEEEL-EDVQSECINANEG-----FVKRM 208
EE A +L+ L A + E D + E+ ED + ++ EG +R
Sbjct: 543 EECSAMNVLDSLVAAEFEKTCAEKLMTEEDLIDSEINEDNNDKQVSRLEGRHAATKSRRH 602
BLAST of Moc09g17430 vs. NCBI nr
Match:
XP_024022362.1 (uncharacterized protein LOC112091881 [Morus notabilis])
HSP 1 Score: 179.9 bits (455), Expect = 2.3e-41
Identity = 120/292 (41.10%), Postives = 156/292 (53.42%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
MP+YV+F+K IL+KKR LGE+ETVA+T+ CS IL +++P K+KDPGSFTIP SIG Q+IG
Sbjct: 133 MPSYVKFMKVILSKKRRLGEFETVALTEECSAILKNRLPPKLKDPGSFTIPCSIGDQYIG 192
Query: 61 LALCDLGASIKLY----------------------------------------------- 120
ALCDLGASI L
Sbjct: 193 KALCDLGASINLMPMSIFRKLGIGEARPTTVTLQLADRSYAHPEGKIEDVLVRVDKFIFP 252
Query: 121 -----------KEVPIILGRPFLVTGRVLVDVHKRELTMSILDEAL-------------M 180
KEVPIILGRPFL TGR L+DV K ELTM + D+ + +
Sbjct: 253 ADFIVLDYEADKEVPIILGRPFLATGRTLIDVQKGELTMRVHDQQVAFNVFKAMRFTDEV 312
Query: 181 EELEAEAMLEHLEAVDTESL--------TDAFEEEL-EDVQSECINANEG-----FVKRM 208
EE A +L+ L A + E D + E+ ED + ++ EG +R
Sbjct: 313 EECSAMNILDSLVAAEFEKTCAEKLMTEEDVIDSEINEDNNDKQVSWLEGRHAATKSRRH 372
BLAST of Moc09g17430 vs. NCBI nr
Match:
XP_017227899.1 (PREDICTED: uncharacterized protein LOC108203467 [Daucus carota subsp. sativus])
HSP 1 Score: 179.1 bits (453), Expect = 4.0e-41
Identity = 117/296 (39.53%), Postives = 155/296 (52.36%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
MPNYV+F+K+ILTKKR LGE+ETVA+TK CS+ L K+P KMKDPGSFTIP +IG + G
Sbjct: 161 MPNYVKFMKDILTKKRRLGEFETVALTKECSSFLQHKLPTKMKDPGSFTIPCTIGDSYCG 220
Query: 61 LALCDLGASIKLY----------------------------------------------- 120
+ALCDLGASI L
Sbjct: 221 MALCDLGASINLMPMSVFRKLGIGEVRPTTVTLQLADRSLAHPEGKIEDVLVKVDKFIFP 280
Query: 121 -----------KEVPIILGRPFLVTGRVLVDVHKRELTMSILDEAL-------------M 180
+EVPIILGRPFL TGR L+DV ELTM + DE + +
Sbjct: 281 ADFIVLDYEADREVPIILGRPFLATGRTLIDVQNGELTMRVQDEKVTFNVFKAMKYSDDV 340
Query: 181 EELEAEAMLEHL--EAVDTESLTDAFEEELEDVQSE---------CINANEGFVKR--MY 213
E+ A + + L + +D+ S D E+ + +V E + AN + +
Sbjct: 341 EDCSAITIFDELISDKLDSNSSHDPLEQLILNVSQEEDDNVELLAWLEANSQVTRTSGRF 400
BLAST of Moc09g17430 vs. ExPASy TrEMBL
Match:
A0A6J1CS22 (uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013805 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 8.4e-53
Identity = 132/246 (53.66%), Postives = 144/246 (58.54%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
MPNYVRFLKEILTKKR LGEYE VAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQ IG
Sbjct: 162 MPNYVRFLKEILTKKRMLGEYEIVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQQIG 221
Query: 61 LALCDLGASIKLY----------------------------------------------- 120
L LCD+GASI +
Sbjct: 222 LTLCDMGASINIMPLSIYNKLGIREARPTTVTLQLADRSITHPEGKIEDVSVQVEKFSFP 281
Query: 121 -----------KEVPIILGRPFLVTGRVLVDVHKRELTM--------------------- 162
KEVPIILGRPFL TGR LVDV+K ELTM
Sbjct: 282 ADFIILDYDAAKEVPIILGRPFLATGRALVDVNKGELTMHVQDQEVKFSVHNSMKFSAES 341
BLAST of Moc09g17430 vs. ExPASy TrEMBL
Match:
A0A6J1DUI2 (uncharacterized protein LOC111024147 OS=Momordica charantia OX=3673 GN=LOC111024147 PE=4 SV=1)
HSP 1 Score: 190.7 bits (483), Expect = 6.4e-45
Identity = 121/232 (52.16%), Postives = 142/232 (61.21%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
MP YV+F K++LTK+R LGE+ETV +TK C TILTSKIP KMKD GSFTIPVSIGG IG
Sbjct: 129 MPTYVKF-KDVLTKERRLGEFETVCLTKECRTILTSKIPQKMKDSGSFTIPVSIGGHKIG 188
Query: 61 LALCDLGASIKL--------------------YKEVPIILGRPFLVTGRVLVDVHKRELT 120
ALCDLGASI L ++EVPIILGRPFL G LVDVHK +T
Sbjct: 189 QALCDLGASINLVPLTVYQKLGMGAVKPMTVTHEEVPIILGRPFLAKGNALVDVHKGVVT 248
Query: 121 MSILDEALMEELEAEAMLEHLEAVDTESLTDAFEEELEDVQSECINANEGFVKRMYESLD 180
M + LE EAML+ E E + +E+ + S R +E L
Sbjct: 249 MR------NKNLELEAMLQKAEDFYYEVFSIDGGKEITNSWS-----------RTHEDLK 308
Query: 181 LTNSQLRLLKPSIEEPPMLELKALPQHLKHAYLGSSETLAIIIAADLPLEKE 213
L + LKPS+EEPP LELKALPQHLK+AYLG + TL IIIAA+L KE
Sbjct: 309 LEEVNQKQLKPSVEEPPKLELKALPQHLKYAYLGVANTLPIIIAANLLKNKE 342
BLAST of Moc09g17430 vs. ExPASy TrEMBL
Match:
A0A6J1DXL0 (uncharacterized protein LOC111025437 OS=Momordica charantia OX=3673 GN=LOC111025437 PE=4 SV=1)
HSP 1 Score: 176.0 bits (445), Expect = 1.6e-40
Identity = 107/162 (66.05%), Postives = 110/162 (67.90%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
M NYVRFLKEILTKKR LGEYETVAM KACS ILTSKIPAKMKDP SFTIPVSIGGQ IG
Sbjct: 1 MLNYVRFLKEILTKKRKLGEYETVAMIKACSNILTSKIPAKMKDPRSFTIPVSIGGQKIG 60
Query: 61 LALCDLGASI---------KLYKEVPIILGRPFLVTGRVLVDVHKRELTM---------- 120
LALCDLGASI KL KEV IILGRPFL T RVLVDVHK LTM
Sbjct: 61 LALCDLGASINLMPLSIYNKLDKEVSIILGRPFLATRRVLVDVHKEGLTMRVQDQEVKFS 120
Query: 121 -----------------SILDEALMEELEAEAMLEHLEAVDT 127
ILDEALMEELE EAML+HL V++
Sbjct: 121 VYDSMKFPTESKECSVLKILDEALMEELEIEAMLKHLXFVES 162
BLAST of Moc09g17430 vs. ExPASy TrEMBL
Match:
A0A6J1DVS9 (uncharacterized protein LOC111024527 OS=Momordica charantia OX=3673 GN=LOC111024527 PE=4 SV=1)
HSP 1 Score: 171.0 bits (432), Expect = 5.3e-39
Identity = 92/120 (76.67%), Postives = 96/120 (80.00%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
MPNY+RFLKEILTKKRTLGEYETVAMTKACSTIL SKIPAKMKDPGSFTIPVSIGGQ IG
Sbjct: 142 MPNYMRFLKEILTKKRTLGEYETVAMTKACSTILISKIPAKMKDPGSFTIPVSIGGQQIG 201
Query: 61 LALCDLGASIKLY--------------KEVPIILGRPFLVTGRVLVDVHKRELTMSILDE 107
LALCDLGASI L K+V IILGRPFL T RVLVDVHK ELTM + D+
Sbjct: 202 LALCDLGASINLMSLSIYNKLVIAEEDKKVSIILGRPFLPTERVLVDVHKGELTMRVQDQ 261
BLAST of Moc09g17430 vs. ExPASy TrEMBL
Match:
A0A2G9HYA0 (Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 1.5e-38
Identity = 118/299 (39.46%), Postives = 154/299 (51.51%), Query Frame = 0
Query: 1 MPNYVRFLKEILTKKRTLGEYETVAMTKACSTILTSKIPAKMKDPGSFTIPVSIGGQHIG 60
MP+YV+F+K+IL+KKR LG+YETVA+T+ CS I+ +K+P K+KDPGSFTIP +IG G
Sbjct: 349 MPSYVKFMKDILSKKRRLGDYETVALTEECSAIIQNKLPPKLKDPGSFTIPCTIGTHFSG 408
Query: 61 LALCDLGASIKLY----------------------------------------------- 120
ALCDLGASI L
Sbjct: 409 RALCDLGASINLMPYSIYRTLGLGEAKPTSITLQLADRSLTYPKGVIEDILVKVDKFIFP 468
Query: 121 -----------KEVPIILGRPFLVTGRVLVDVHKRELTM--------------------- 180
EVPIILGRPFL TGR L+DV K ELTM
Sbjct: 469 ADFVVLDMEVDSEVPIILGRPFLATGRTLIDVQKGELTMRVQDQQITFNVFKAMKFPNES 528
Query: 181 ------SILDEALMEELEAEAMLEHLEAVDTESLTDAFEEELEDVQSECINANEGFVKRM 212
S+ D+ E AE L+ LE + L + EE+LE V++ ++A++ R
Sbjct: 529 DECFAVSLFDKLAGNESIAEPPLDPLERALLDLLDEENEEDLEVVKT--LDASKFLKSRR 588
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022144016.1 | 1.7e-52 | 53.66 | uncharacterized protein LOC111013805 [Momordica charantia] | [more] |
XP_022157452.1 | 1.3e-44 | 52.16 | uncharacterized protein LOC111024147 [Momordica charantia] | [more] |
XP_024028757.1 | 4.7e-42 | 41.10 | uncharacterized protein LOC112093792 [Morus notabilis] | [more] |
XP_024022362.1 | 2.3e-41 | 41.10 | uncharacterized protein LOC112091881 [Morus notabilis] | [more] |
XP_017227899.1 | 4.0e-41 | 39.53 | PREDICTED: uncharacterized protein LOC108203467 [Daucus carota subsp. sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1CS22 | 8.4e-53 | 53.66 | uncharacterized protein LOC111013805 OS=Momordica charantia OX=3673 GN=LOC111013... | [more] |
A0A6J1DUI2 | 6.4e-45 | 52.16 | uncharacterized protein LOC111024147 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A6J1DXL0 | 1.6e-40 | 66.05 | uncharacterized protein LOC111025437 OS=Momordica charantia OX=3673 GN=LOC111025... | [more] |
A0A6J1DVS9 | 5.3e-39 | 76.67 | uncharacterized protein LOC111024527 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A2G9HYA0 | 1.5e-38 | 39.46 | Reverse transcriptase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=... | [more] |
Match Name | E-value | Identity | Description | |