Moc09g16310 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g16310
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCob intron3 ORF
Locationchr9: 13264689 .. 13266126 (+)
RNA-Seq ExpressionMoc09g16310
SyntenyMoc09g16310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGACTTTATGAGTAAATCAGCGAGAATTAGGTATGTGCGCTACGCTGACGATATAGCTTTTGCTATGTTGGAAGGAGCCAACTCAGAAATGGTAAGCCAAGGGTTCAAGCAATTCTTTAATGAGGCTTTGACGGAGCTCAAACTGGAAGCAACTAGTTTGGAGCTCGTTCGAGGAATAAGCAAGCCATGCTCTACCTTAGTTCTCGGAGTCCTAATATCAATTCGTCCGGACAGAAACTTGGAGTTAAGGGCACCCGGTTCAAAAAAAAATGTTTCAATCAATCGACAACGACATAAGGAAGATACAAGGCAAAGGCGTAAAACAAAATGTGAGCGCTCCTTCCCCTCGTATTCCAGTATCTCGCTTTCTTTTCGTGTTGTTGCAATGCTAACGAGGTACTAGCTTTTCTACAGAATTCGTACATGAAAAAGTACAAGTTGTATCTTCAACTACATAAGAAGATAAAGCCCAAGGGGAAAGGCGAAACCGAAAACCTCCTCAACTTTGGAAGTCTCAATACGCGCTAAAAGCATTTCCAACTAAAATTGCGTAAGATAAGAAAGGAATTCATTGACTTCGAACAACAAAAAGGGGGTCAATGAGCACTAACTCTGACTTTTTTGTTTTGAAAGGAATGCTGCTGTAAAAAACGGAGGCGGAATTACAGTGAAGAAAAAGTCTCATGCAGGATAGCTGCCGCTAACAAAATTCACACAATTTTCGTATAGAAACAACAGCAGCAGTACGGCTTTTAGAAGGCTCTCTCCTCTCTTCTATTACTTGTTTGAGTTCCCCTCTCTCCCATCCTCTTTTCAAGTCCCACTCTTTTCCCGGTTAACAACGGCAGACCCTCTACAATAGAGCCCCCAGGGTAAAAGAACATTTTCGTAAAGAGAAGCTCCGAAAACTGGCAACCTATGCCCTCATTCCATTCTTTTTTATTGTAGTTTTCTTCTGGGCTTCATCCCGTCCGTTCCATTACATCTAGTGCGTGTCATACTTCTTTTTTGGGTATAAGCCGTTAAAAAAAAAAAGGCTCTTCAACAACTCTCATCTTTGGATGTAGGTTGTTTAGGGGATCTGGCGTGGGTGGATAGTAGGTTGGATTCTTTCCATTTTCATCGAAACCGAAGCCATGCCACTTTTCAATATGATGAACCCCGACCCTATTCAAACTCGAGAATTTGGGTGACCGGTACCTCTTGACCCATATCAACAACAAACGCAGGCATCCCCTTCTCCTTCAGAGGTTGTTCAAGAATACCCACAGGACCTTCTCTGGGATGAACTCGAAAAACAAGAAAGAAACAAAAGGGAGGAGGAGGAGCGCGATCTCATGACCTCGAGACAGTTTCGCGCCACAGAGCGGACCCTGGAGGAGTTCGACCACAGGGTCAAAATGAGAAAAGAGAGACCAACTCGTGAGGACTAG

mRNA sequence

ATGCAAGACTTTATGAGTAAATCAGCGAGAATTAGGTATGTGCGCTACGCTGACGATATAGCTTTTGCTATGTTGGAAGGAGCCAACTCAGAAATGGTAAGCCAAGGGTTCAAGCAATTCTTTAATGAGGCTTTGACGGAGCTCAAACTGGAAGCAACTAGTTTGGAGCTCGTTCGAGGAATAAGCAAGCCATGCTCTACCTTAGTTCTCGGAGTCCTAATATCAATTCGTCCGGACAGAAACTTGGAGTTAAGGGCACCCGGTTCAAAAAAAAATGTTTCAATCAATCGACAACGACATAAGGAAGATACAAGGCAAAGGCGTAAAACAAAATGTGAGCGCTCCTTCCCCTCGTATTCCAGTATCTCGCTTTCTTTTCGTGTTGTTGCAATGCTAACGAGTTTTCTTCTGGGCTTCATCCCGTCCGTTCCATTACATCTAGTGCGTGTCATACTTCTTTTTTGGGCATCCCCTTCTCCTTCAGAGGTTGTTCAAGAATACCCACAGGACCTTCTCTGGGATGAACTCGAAAAACAAGAAAGAAACAAAAGGGAGGAGGAGGAGCGCGATCTCATGACCTCGAGACAGTTTCGCGCCACAGAGCGGACCCTGGAGGAGTTCGACCACAGGGTCAAAATGAGAAAAGAGAGACCAACTCGTGAGGACTAG

Coding sequence (CDS)

ATGCAAGACTTTATGAGTAAATCAGCGAGAATTAGGTATGTGCGCTACGCTGACGATATAGCTTTTGCTATGTTGGAAGGAGCCAACTCAGAAATGGTAAGCCAAGGGTTCAAGCAATTCTTTAATGAGGCTTTGACGGAGCTCAAACTGGAAGCAACTAGTTTGGAGCTCGTTCGAGGAATAAGCAAGCCATGCTCTACCTTAGTTCTCGGAGTCCTAATATCAATTCGTCCGGACAGAAACTTGGAGTTAAGGGCACCCGGTTCAAAAAAAAATGTTTCAATCAATCGACAACGACATAAGGAAGATACAAGGCAAAGGCGTAAAACAAAATGTGAGCGCTCCTTCCCCTCGTATTCCAGTATCTCGCTTTCTTTTCGTGTTGTTGCAATGCTAACGAGTTTTCTTCTGGGCTTCATCCCGTCCGTTCCATTACATCTAGTGCGTGTCATACTTCTTTTTTGGGCATCCCCTTCTCCTTCAGAGGTTGTTCAAGAATACCCACAGGACCTTCTCTGGGATGAACTCGAAAAACAAGAAAGAAACAAAAGGGAGGAGGAGGAGCGCGATCTCATGACCTCGAGACAGTTTCGCGCCACAGAGCGGACCCTGGAGGAGTTCGACCACAGGGTCAAAATGAGAAAAGAGAGACCAACTCGTGAGGACTAG

Protein sequence

MQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLELVRGISKPCSTLVLGVLISIRPDRNLELRAPGSKKNVSINRQRHKEDTRQRRKTKCERSFPSYSSISLSFRVVAMLTSFLLGFIPSVPLHLVRVILLFWASPSPSEVVQEYPQDLLWDELEKQERNKREEEERDLMTSRQFRATERTLEEFDHRVKMRKERPTRED
Homology
BLAST of Moc09g16310 vs. NCBI nr
Match: QWQ49911.1 (hypothetical protein [Zelkova schneideriana])

HSP 1 Score: 153.7 bits (387), Expect = 1.9e-33
Identity = 84/102 (82.35%), Postives = 89/102 (87.25%), Query Frame = 0

Query: 1   MQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLELVRG 60
           MQDFMSK ARI+YVRYADDIAF + EGANSEMVSQGFKQFFNEALTELKLEATSLELVRG
Sbjct: 12  MQDFMSKEARIKYVRYADDIAFDIKEGANSEMVSQGFKQFFNEALTELKLEATSLELVRG 71

Query: 61  ISKPCSTLVLGVLISIRPDRNLELRAPGSKKNVSINRQRHKE 103
           ISKPCSTLVLGVLISIRPDR LELRA       +INR + K+
Sbjct: 72  ISKPCSTLVLGVLISIRPDRQLELRA-------AINRLKIKK 106

BLAST of Moc09g16310 vs. NCBI nr
Match: WP_131796638.1 (hypothetical protein [Candidatus Frankia datiscae])

HSP 1 Score: 114.8 bits (286), Expect = 9.7e-22
Identity = 62/67 (92.54%), Postives = 63/67 (94.03%), Query Frame = 0

Query: 156 ASPSPSEVVQEYPQDLLWDELEKQERNKREEEERDLMTSRQFRATERTLEEFDHRVKMRK 215
           ASPSPSEVVQEYPQD LWDELEKQER KREEEERDLMTSRQFRATERTLEEF HRVK+ K
Sbjct: 79  ASPSPSEVVQEYPQDPLWDELEKQERKKREEEERDLMTSRQFRATERTLEEFYHRVKILK 138

Query: 216 ERPTRED 223
           ERPTRED
Sbjct: 139 ERPTRED 145

BLAST of Moc09g16310 vs. NCBI nr
Match: DAD25595.1 (TPA_asm: hypothetical protein HUJ06_027059 [Nelumbo nucifera] >DAD25646.1 TPA_asm: hypothetical protein HUJ06_027110 [Nelumbo nucifera] >DAD25659.1 TPA_asm: hypothetical protein HUJ06_027123 [Nelumbo nucifera] >DAD49315.1 TPA_asm: hypothetical protein HUJ06_032036 [Nelumbo nucifera] >DAD49591.1 TPA_asm: hypothetical protein HUJ06_000103 [Nelumbo nucifera])

HSP 1 Score: 98.2 bits (243), Expect = 9.4e-17
Identity = 48/97 (49.48%), Postives = 71/97 (73.20%), Query Frame = 0

Query: 1   MQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLELVRG 60
           ++  + +  ++RYVRYADD+ F +L+G +SE VSQ F++ F EAL  +KLEATS EL+RG
Sbjct: 91  IRSILEQEDKLRYVRYADDMLFGILQGVDSESVSQRFQKLFREALDTIKLEATSHELIRG 150

Query: 61  ISKPCSTLVLGVLISIRPDRNLELRAPGSKKNVSINR 98
            + PC+TLVLGVL+SI+ +  LE+RAP  +    +N+
Sbjct: 151 TTIPCATLVLGVLVSIKREGALEMRAPIKRFKRKLNQ 187

BLAST of Moc09g16310 vs. NCBI nr
Match: KUM47405.1 (cob intron3 ORF [Picea glauca] >QHR89591.1 putative group II intron reverse transcriptase [Picea sitchensis])

HSP 1 Score: 81.6 bits (200), Expect = 9.1e-12
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 1   MQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLELVRG 60
           + +FM     + YVRYADD+ FA+ +G +SE V   +K+FF +AL +LKL  TS+EL+RG
Sbjct: 92  IHEFMETEESLGYVRYADDMIFAIKKGVDSERVYLRYKEFFQKALADLKLAETSIELIRG 151

Query: 61  ISKPCSTLVLGVLISIRPDRNLELRAP 88
           I  P  T VLG+++SI P   LE RAP
Sbjct: 152 I--PRKTRVLGLVVSIGPTGTLETRAP 176

BLAST of Moc09g16310 vs. NCBI nr
Match: YP_009381647.1 (hypothetical protein AEK19_MT1231 [Utricularia reniformis] >ART31444.1 hypothetical protein AEK19_MT1231 [Utricularia reniformis])

HSP 1 Score: 65.1 bits (157), Expect = 8.8e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 1  MQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQG 37
          MQDF+S+ AR+RYVRYADDIAFAMLEGANSEMVS G
Sbjct: 12 MQDFLSQEARMRYVRYADDIAFAMLEGANSEMVSLG 47

BLAST of Moc09g16310 vs. ExPASy TrEMBL
Match: A0A117NGV6 (Cob intron3 ORF OS=Picea glauca OX=3330 GN=ymfcob PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.4e-12
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 0

Query: 1   MQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLELVRG 60
           + +FM     + YVRYADD+ FA+ +G +SE V   +K+FF +AL +LKL  TS+EL+RG
Sbjct: 92  IHEFMETEESLGYVRYADDMIFAIKKGVDSERVYLRYKEFFQKALADLKLAETSIELIRG 151

Query: 61  ISKPCSTLVLGVLISIRPDRNLELRAP 88
           I  P  T VLG+++SI P   LE RAP
Sbjct: 152 I--PRKTRVLGLVVSIGPTGTLETRAP 176

BLAST of Moc09g16310 vs. ExPASy TrEMBL
Match: A0A1Y0B229 (Uncharacterized protein OS=Utricularia reniformis OX=192314 GN=AEK19_MT1231 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 4.3e-07
Identity = 31/36 (86.11%), Postives = 34/36 (94.44%), Query Frame = 0

Query: 1  MQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQG 37
          MQDF+S+ AR+RYVRYADDIAFAMLEGANSEMVS G
Sbjct: 12 MQDFLSQEARMRYVRYADDIAFAMLEGANSEMVSLG 47

BLAST of Moc09g16310 vs. ExPASy TrEMBL
Match: A0A5N6L0M6 (Reverse transcriptase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_025303 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-07
Identity = 36/83 (43.37%), Postives = 48/83 (57.83%), Query Frame = 0

Query: 5   MSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLELVRGISKP 64
           M     +RY RYADD+ F  L+GA+SE   + F+  F E L  LKLE + +EL+R    P
Sbjct: 348 METETTLRYARYADDMIFGFLKGADSEAAYKRFRTSFRENLEALKLEDSCIELLR--RSP 407

Query: 65  CSTLVLGVLISIRPDRNLELRAP 88
             T VLG++  + P   LE RAP
Sbjct: 408 WKTRVLGLITFLGPKGTLETRAP 428

BLAST of Moc09g16310 vs. ExPASy TrEMBL
Match: A0A2T8I3J9 (Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_9G354900 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.6e-07
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 14 VRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLELVRGISKPC-STLVLGV 73
          V Y D+  FA+ +G  SE VSQ F+Q   E+L ELKL   SLEL+R +SKPC + ++ GV
Sbjct: 15 VIYVDNFVFAIKKGPESERVSQSFQQMLKESLAELKLFLKSLELIREVSKPCYNYIISGV 74

Query: 74 LISIRPD 80
          L+SI  D
Sbjct: 75 LVSIHSD 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QWQ49911.11.9e-3382.35hypothetical protein [Zelkova schneideriana][more]
WP_131796638.19.7e-2292.54hypothetical protein [Candidatus Frankia datiscae][more]
DAD25595.19.4e-1749.48TPA_asm: hypothetical protein HUJ06_027059 [Nelumbo nucifera] >DAD25646.1 TPA_as... [more]
KUM47405.19.1e-1249.43cob intron3 ORF [Picea glauca] >QHR89591.1 putative group II intron reverse tran... [more]
YP_009381647.18.8e-0786.11hypothetical protein AEK19_MT1231 [Utricularia reniformis] >ART31444.1 hypotheti... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A117NGV64.4e-1249.43Cob intron3 ORF OS=Picea glauca OX=3330 GN=ymfcob PE=4 SV=1[more]
A0A1Y0B2294.3e-0786.11Uncharacterized protein OS=Utricularia reniformis OX=192314 GN=AEK19_MT1231 PE=4... [more]
A0A5N6L0M65.6e-0743.37Reverse transcriptase domain-containing protein OS=Carpinus fangiana OX=176857 G... [more]
A0A2T8I3J95.6e-0750.75Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_9G354900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 95..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g16310.1Moc09g16310.1mRNA