Moc09g15890 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g15890
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	30S ribosomal protein S12, chloroplastic
Location	chr9: 13144319 .. 13144837 (+)
RNA-Seq Expression	Moc09g15890
Synteny	Moc09g15890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAAACGTGACTGAATTGGTCCCAGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCAAATTACTTCGAAAGAATTGAACGAGGAACCGTATGAGGTGAAAATCTCATGTACGGTTCTGTAGAGTGCCTTGTATAGGTTGGGGAAGGGTGACTGAGATGTCAACTTTTTTTCTACTATCACCCCCAAAAAACCAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCTGGATTTGAAATCACTGCTTATATACCAGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTTGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAA

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCCAGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCAAATTACTTCGAAAGAATTGAACGAGGAACCGTATGAGGTGAAAATCTCATGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTTGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAA

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCAGTCACTCTTCGGGACGGAATGGAAGAAGGGAGGAGATTCTCGAACGAGGAAAAGGATCAAATTACTTCGAAAGAATTGAACGAGGAACCGTATGAGGTGAAAATCTCATGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTTGATTCTTATCCAAGACTTGTATCATTTGATGATGCCATGTGAATCGCTAGAAACATGTGAAGTGTATGGCTAA

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISCIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSALLILIQDLYHLMMPCESLETCEVYG

Homology

[Close]

BLAST of Moc09g15890 vs. NCBI nr
Match: KAF6139964.1 (hypothetical protein GIB67_011674, partial [Kingdonia uniflora])

HSP 1 Score: 189.5 bits (480), Expect = 1.7e-44
Identity = 105/152 (69.08%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEP--------------------- 61
           +ENVTELV VTL DG+EEGRRFSNEEKD +TSKELN+EP                     
Sbjct: 8   HENVTELVLVTLGDGVEEGRRFSNEEKDPMTSKELNKEPKGGLSVNFSTITPKKPNSVLR 67

Query: 62  ----------YEVK--ISCIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR 121
                     +E+   I  IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR
Sbjct: 68  KVARVRLTFRFEITSYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR 127

[Close]

BLAST of Moc09g15890 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.9 bits (424), Expect = 5.2e-38
Identity = 94/143 (65.73%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC------------- 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKD +TSKELNEEPYEVKISC             
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  ----------------------------------IGHNLQEHSVVLVRGGRVKDLPGVRY 97
                                             IGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

[Close]

BLAST of Moc09g15890 vs. NCBI nr
Match: KAF3449792.1 (hypothetical protein FNV43_RR05870 [Rhamnella rubrinervis])

HSP 1 Score: 163.3 bits (412), Expect = 1.3e-36
Identity = 86/113 (76.11%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC------------- 60
           MNENVTELV VTLR+G+EEG+RF+NEE+D +TSKELNEEPYE+KIS              
Sbjct: 1   MNENVTELVLVTLRNGVEEGKRFANEERDPMTSKELNEEPYEMKISFARVRLTSGFEITA 60

Query: 61  ----IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 97
               IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 61  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 113

[Close]

BLAST of Moc09g15890 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 160.2 bits (404), Expect = 1.1e-35
Identity = 91/143 (63.64%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKIS-------------- 60
           MNENVT+LVPVTLRDGMEEGRRFSNEEKD +TSKELNEEPYEVKIS              
Sbjct: 1   MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61  ---------------------------------CIGHNLQEHSVVLVRGGRVKDLPGVRY 97
                                             IGHNLQEHS VLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRY 120

[Close]

BLAST of Moc09g15890 vs. NCBI nr
Match: RWR98291.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-35
Identity = 90/138 (65.22%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-------------- 61
           +ENVTELV VTLRDG+EEGRRFSNEEKD ITSKELNEEPYEVKISC              
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCTSDSKGDLSVNFSL 67

Query: 62  -----------------------------IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRG 97
                                        IGHN QEHSVVLVRGGRVKDLPGVRYHIVRG
Sbjct: 68  SLSPPKNQTLPYVKVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRG 127

[Close]

BLAST of Moc09g15890 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-20
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 48  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 97
           IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 70  IGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of Moc09g15890 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-20
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 48  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 97
           IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 70  IGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of Moc09g15890 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.8e-20
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 0


Query: 48  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 97
           IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 70  IGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of Moc09g15890 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 48  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 94
           IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 70  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of Moc09g15890 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 48  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 94
           IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 71  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 116

[Close]

BLAST of Moc09g15890 vs. ExPASy TrEMBL
Match: A0A7J7LBS2 (Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_011674 PE=3 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 8.1e-45
Identity = 105/152 (69.08%), Postives = 111/152 (73.03%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEP--------------------- 61
           +ENVTELV VTL DG+EEGRRFSNEEKD +TSKELN+EP                     
Sbjct: 8   HENVTELVLVTLGDGVEEGRRFSNEEKDPMTSKELNKEPKGGLSVNFSTITPKKPNSVLR 67

Query: 62  ----------YEVK--ISCIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR 121
                     +E+   I  IGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR
Sbjct: 68  KVARVRLTFRFEITSYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDR 127

[Close]

BLAST of Moc09g15890 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.5e-38
Identity = 94/143 (65.73%), Postives = 95/143 (66.43%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC------------- 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKD +TSKELNEEPYEVKISC             
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  ----------------------------------IGHNLQEHSVVLVRGGRVKDLPGVRY 97
                                             IGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

[Close]

BLAST of Moc09g15890 vs. ExPASy TrEMBL
Match: A0A7N2N888 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.7e-37
Identity = 89/113 (78.76%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC------------- 60
           MNENVTE V VTLR G+EEGRRFSNEEKD  TSKELNEEPYEVKIS              
Sbjct: 1   MNENVTESVLVTLRGGVEEGRRFSNEEKDPTTSKELNEEPYEVKISFARVRLTSGFEITA 60

Query: 61  ----IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 97
               IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 61  YIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL 113

[Close]

BLAST of Moc09g15890 vs. ExPASy TrEMBL
Match: A0A3S3PCQ6 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02782100 PE=3 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.2e-35
Identity = 90/138 (65.22%), Postives = 92/138 (66.67%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-------------- 61
           +ENVTELV VTLRDG+EEGRRFSNEEKD ITSKELNEEPYEVKISC              
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCTSDSKGDLSVNFSL 67

Query: 62  -----------------------------IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRG 97
                                        IGHN QEHSVVLVRGGRVKDLPGVRYHIVRG
Sbjct: 68  SLSPPKNQTLPYVKVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRG 127

[Close]

BLAST of Moc09g15890 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.5e-35
Identity = 90/139 (64.75%), Postives = 92/139 (66.19%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDQITSKELNEEPYEVKISC-------------- 61
           +ENVTELV VTLRDG+EEGRRFSNEEKD ITSKELNEEPYEVKISC              
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCTSDSKGDLSVNFST 67

Query: 62  ------------------------------IGHNLQEHSVVLVRGGRVKDLPGVRYHIVR 97
                                         IGHN QEHSVVLVRGGRVKDLPGVRYHIVR
Sbjct: 68  ITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVR 127

[Close]

BLAST of Moc09g15890 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 97.4 bits (241), Expect = 8.1e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 48  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 94
           IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 70  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of Moc09g15890 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 97.4 bits (241), Expect = 8.1e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 48  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 94
           IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 70  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of Moc09g15890 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 97.4 bits (241), Expect = 8.1e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0


Query: 48  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 94
           IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 70  IGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 115

[Close]

BLAST of Moc09g15890 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 49  GHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 94
           GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 71  GHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of Moc09g15890 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-11
Identity = 28/45 (62.22%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 49  GHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 94
           GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++GRS
Sbjct: 71  GHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:

BLAST of Moc09g15890 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF6139964.1	1.7e-44	69.08	hypothetical protein GIB67_011674, partial [Kingdonia uniflora]	[more]
XP_022932068.1	5.2e-38	65.73	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
KAF3449792.1	1.3e-36	76.11	hypothetical protein FNV43_RR05870 [Rhamnella rubrinervis]	[more]
XP_038896566.1	1.1e-35	63.64	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
RWR98291.1	2.4e-35	65.22	LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran...	[more]

BLAST of Moc09g15890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1KXY0	1.8e-20	97.96	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A...	[more]
Q332V3	1.8e-20	97.96	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE...	[more]
Q0G9J5	1.8e-20	97.96	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]
A4QJV5	1.1e-19	100.00	30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
A4QJX7	1.1e-19	100.00	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]

BLAST of Moc09g15890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7LBS2	8.1e-45	69.08	Uncharacterized protein OS=Kingdonia uniflora OX=39325 GN=GIB67_011674 PE=3 SV=1	[more]
A0A6J1F0L1	2.5e-38	65.73	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A7N2N888	3.7e-37	78.76	Uncharacterized protein OS=Quercus lobata OX=97700 PE=3 SV=1	[more]
A0A3S3PCQ6	1.2e-35	65.22	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A3S3NSS0	1.5e-35	64.75	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]

BLAST of Moc09g15890 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	8.1e-21	100.00	ribosomal protein S12A	[more]
ATCG01230.1	8.1e-21	100.00	ribosomal protein S12B	[more]
ATCG00905.1	8.1e-21	100.00	ribosomal protein S12C	[more]
AT2G07675.1	1.5e-11	62.22	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	1.5e-11	62.22	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 72..88 score: 64.3 coord: 55..72 score: 88.58 coord: 36..55 score: 42.22
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 49..91 e-value: 6.9E-11 score: 41.8
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 45..96
None	No IPR available	GENE3D	2.40.50.140		coord: 21..96 e-value: 1.2E-22 score: 81.9
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 45..96
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 45..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g15890.1	Moc09g15890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome