Moc09g15580 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g15580
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr9: 13050998 .. 13051605 (+)
RNA-Seq Expression	Moc09g15580
Synteny	Moc09g15580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAGATGAACCCGAAATCCCGGTTCCGCCTGAACCAACCACTTTCGACATTCTCAAGGCTCTGTTGGCCCAAAAGGAAAGCTTGAACCGGGCCATCAATAAGTCAGCTCCTTCTACTGCACCTCAAGCACCTCCGGTTCAGGTCTTTGATGATTGTGACCAATATGCTGAAGACTCTCCCGACCCAGGACAGCCTTTTTAATTTAACAGGCCACAGCCCTTCCTTCCCCTAAAGCCAGAACTGAAATGGAAAAATGGTTGAAAGAACAAGGGGAGCTGCTAGCCAAGTTACAGGAAGAGTTGCAGAAAGTAAAGGGTCTAGAGACCATGGGCTCAACATGAAGGGATTGACCATTTTTCCAGAGGAAAAATCTCCAGAAAAGTTCGACGATGCCTGACATAGACAAATACGATGGAACTGGCTGTCCTAAGACTCATCTGCTGCTGTTTTTCTCAAATGTAGGTTCTATGAGGCTCACTCAGAAGCAGATGGCCAAAATCTTTCCTAGAATTCTTAGTGGGGCCGCTGGGCGATGGTTCACACAGATTGACAAATCTACCCTTAAATCCTGGGATGACATCGCCAATGCTTTTTTGAAACAATAG

mRNA sequence

ATGTCAGATGAACCCGAAATCCCGGTTCCGCCTGAACCAACCACTTTCGACATTCTCAAGGCTCTGTTGGCCCAAAAGGAAAGCTTGAACCGGGCCATCAATAAGTCAGCTCCTTCTACTGCACCTCAAGCACCTCCGGTTCAGGCCACAGCCCTTCCTTCCCCTAAAGCCAGAACTGAAATGGAAAAATGGTTGAAAGAACAAGGGGAGCTGCTAGCCAAGTTACAGGAAGAGTTGCAGAAAGTAAAGGGTTCTATGAGGCTCACTCAGAAGCAGATGGCCAAAATCTTTCCTAGAATTCTTAGTGGGGCCGCTGGGCGATGGTTCACACAGATTGACAAATCTACCCTTAAATCCTGGGATGACATCGCCAATGCTTTTTTGAAACAATAG

Coding sequence (CDS)

ATGTCAGATGAACCCGAAATCCCGGTTCCGCCTGAACCAACCACTTTCGACATTCTCAAGGCTCTGTTGGCCCAAAAGGAAAGCTTGAACCGGGCCATCAATAAGTCAGCTCCTTCTACTGCACCTCAAGCACCTCCGGTTCAGGCCACAGCCCTTCCTTCCCCTAAAGCCAGAACTGAAATGGAAAAATGGTTGAAAGAACAAGGGGAGCTGCTAGCCAAGTTACAGGAAGAGTTGCAGAAAGTAAAGGGTTCTATGAGGCTCACTCAGAAGCAGATGGCCAAAATCTTTCCTAGAATTCTTAGTGGGGCCGCTGGGCGATGGTTCACACAGATTGACAAATCTACCCTTAAATCCTGGGATGACATCGCCAATGCTTTTTTGAAACAATAG

Protein sequence

MSDEPEIPVPPEPTTFDILKALLAQKESLNRAINKSAPSTAPQAPPVQATALPSPKARTEMEKWLKEQGELLAKLQEELQKVKGSMRLTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ

Homology

[Close]

BLAST of Moc09g15580 vs. NCBI nr
Match: KAF4349906.1 (hypothetical protein G4B88_002328 [Cannabis sativa])

HSP 1 Score: 65.1 bits (157), Expect = 5.2e-07
Identity = 32/35 (91.43%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MSDEPEIPVPPEPTTFDILKALLAQKESLNRAINK 36
           MSD PEIPVPPEPTT DILKALLAQ ESLNRAINK
Sbjct: 405 MSDSPEIPVPPEPTTHDILKALLAQMESLNRAINK 439

[Close]

BLAST of Moc09g15580 vs. NCBI nr
Match: XP_034710520.1 (uncharacterized protein LOC117933245 [Vitis riparia])

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 24/44 (54.55%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 87  RLTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ 131
           RL + QM  +FP  LSGAA RWFT +D S  ++WDD+A  FL+Q
Sbjct: 54  RLDEAQMVMLFPMSLSGAAQRWFTSLDVSRRRTWDDLAQEFLRQ 97

[Close]

BLAST of Moc09g15580 vs. ExPASy TrEMBL
Match: A0A7J6DV61 (Complex1_49kDa domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002328 PE=3 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.5e-07
Identity = 32/35 (91.43%), Postives = 32/35 (91.43%), Query Frame = 0


Query: 1   MSDEPEIPVPPEPTTFDILKALLAQKESLNRAINK 36
           MSD PEIPVPPEPTT DILKALLAQ ESLNRAINK
Sbjct: 405 MSDSPEIPVPPEPTTHDILKALLAQMESLNRAINK 439

[Close]

BLAST of Moc09g15580 vs. ExPASy TrEMBL
Match: A0A438E972 (Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_070989 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 7.5e-04
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 88  LTQKQMAKIFPRILSGAAGRWFTQIDKSTLKSWDDIANAFLKQ 131
           L + QM  +FP  LSGAA RWFT +D S  ++WDD+A  FL+Q
Sbjct: 234 LDETQMIMLFPMSLSGAAQRWFTSLDVSHRRTWDDLAQEFLRQ 276

The following BLAST results are available for this feature:

BLAST of Moc09g15580 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4349906.1	5.2e-07	91.43	hypothetical protein G4B88_002328 [Cannabis sativa]	[more]
XP_034710520.1	2.4e-04	54.55	uncharacterized protein LOC117933245 [Vitis riparia]	[more]

BLAST of Moc09g15580 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g15580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6DV61	2.5e-07	91.43	Complex1_49kDa domain-containing protein OS=Cannabis sativa OX=3483 GN=G4B88_002...	[more]
A0A438E972	7.5e-04	53.49	Retrotrans_gag domain-containing protein OS=Vitis vinifera OX=29760 GN=CK203_070...	[more]

BLAST of Moc09g15580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 65..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g15580.1	Moc09g15580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0048038	quinone binding