Moc09g15540 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g15540
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCytochrome c oxidase subunit 1
Locationchr9: 13044749 .. 13046717 (+)
RNA-Seq ExpressionMoc09g15540
SyntenyMoc09g15540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCCTAACCTAAGTGGGCCTACCAGCAAAGCAACAGGTACTTGATCGGGCGGGGGAGCGGTTTGGTTTCGTGCAACGCCCTCGCAGCAGGAAGAGGCTGTTGTCATTTGAAAGGAAAAGCCTCTTGTTTGTATAGGGTTCCAAACCTGCGCACCCCTAAACTAAAAGCTTTGAAGCCCCAACTTTTTTTATGGGATATTTGAAGAAAGAAGCCCCTTCATTATTATTAGTAGTAAGAGTAAGGTTTTCAAAAGGCGTAGACAAGCTACCTTTATGAAAAACCTTTGAGTTTAGGGGTAAGGGGGCGCTAACGAGCAAGAAAAGGCCCCTTCCTATATCGAGAGATAGGCTAAGGCGCCTTTACTATCTAATAGTGGGCCCCTCTTTCCTTTTTTGTTATTGAAAAAGGGGCAACTTTCTCGCTTGTTGCTTTAGAAAGATGGCAGGGGCGCGTTAGCGCTTTACTAATAGTTTTCGAAAGTCGACGGCTCCTCTCCTTTCCTACGAATCTACAACTCTCTTTACTGAGAGAGACTCCATCCATATCCCTACTAGTGGATATTCAGAATTTTCCATTCTATCATTTGTTTGACAGCTTTTTCTAGGCTCCATTTTTGATAGGTTTTCGGTCTTAATCAAGATAGGTCAGGGGCGCGTCGGAACGGTCGGTGGCTGCTTAGTCTCATCCGAGAGTCTAATCTCTTTGTACTGTTTTTTTTTTCAAAGAAAAAAAAAAGAAAGAAGGGGGTCGATTTAGGCTCCTTCCCTTCCACTGCATAGCTGCGCTAGCAGGTACTACGAGCCCTCTGTCCCACGCATCTAACCTGCTCGCGTGGTTCACCGGTTCCACCGAAAACTCTCATTTGTTGAAGGGGAGCATAGTGCGCTTTAGGCACCGAGCGAGAAACGTCTCTTCTTTCGTTTCGGTTTATTCACTGATCTGAAACTTAGCACTTGTTTTCTTATTGATTCCAGGGGCGGCGGCGTTCTTGAATGAAGTCGAGACGAACCGAATTAGCACTTCTCAGATCAGGCTAGGCCTCTCCAGCGGAGCTGGGCGCCGGGGCCCTGGATGCGCTAGCGATCAGCACATAGGGGAGTGGTTGCCCGGGTTTCTCGGCCTGGTATCCTGCACCTCGCGTTCATGATATCTACATTCAACTGTGCCCCGGAGACACGGTCGAAGCACGCCCAGTGTGCTTCTTTCACGACATGCTCTGGTCCCGGGTGTCTTCCAGTGGTCTTCTAGCGTTAGAAGAAGTCGTGTCCGTCCTGGACATCCGCAATGTCCTCCCACGCTTTTTTTATTTTCAATATAGGACAAACTGAAGGAAAAGACTGACCCATTCGGTGACTTTCGCGGTCGCCCTCACTGAACCGACTTGAATCTGAACTACGATTCAGATCAAGTCTTACCGAAATCGGATTTCCTTTTCGTGCCATATGCGCTTAGACTTGACTTTATCCCCCTTTTTTTCCCGGTCCAATATTTGTTCTCGAAAGTCTTCGTTTCCGTGTCGAAGCAAACTCTCCAAATTTATGACCAACCCTTCCTTCAGTGATCTTACAACGAACAGAAGTTTTTCCATTGTAAATTCGTACGGAGCTATCAACGAATTCCGGCAAAATCGAGGATCTACGTGACCAAATTTTCCTGTTCAAAAGAGGATCTCTCTTCTTCTTCATTCTCAACAGGAATGCATCAACAAAACTGCCCTTCCATATAGATCGTCGTGGCATGAACTCATTTCTCCTTTTCCCCACCCCTGCCCGAAATCCCGCTTTGGTGGGCTTCCCTCAAGGTGACACCGAAGGTCTACCTCCTTTAGTAGCTCGGCATCGGGAATCAATGAGTTTTTCAACACCCGAAGGTAGCCGCACAAGCCTAAGAGAGAGTGTAGGGGGTGCAGGTTCCTTCATTATTTTAGCAAAAGTTCCTGCGGCTCGAGCCAGCTTTGCGCTTTGA

mRNA sequence

ATGCCCCCTAACCTAAGTGGGCCTACCAGCAAAGCAACAGGGGCGGCGGCGTTCTTGAATGAAGTCGAGACGAACCGAATTAGCACTTCTCAGATCAGGCTAGGCCTCTCCAGCGGAGCTGGGCGCCGGGGCCCTGGATGCGCTAGCGATCAGCACATAGGGGAGTGGTTGCCCGGGAATGCATCAACAAAACTGCCCTTCCATATAGATCGTCGTGGCATGAACTCATTTCTCCTTTTCCCCACCCCTGCCCGAAATCCCGCTTTGGTGGGCTTCCCTCAAGGTGACACCGAAGGTCTACCTCCTTTAGTAGCTCGGCATCGGGAATCAATGAGTTTTTCAACACCCGAAGGTAGCCGCACAAGCCTAAGAGAGAGTGTAGGGGGTGCAGGTTCCTTCATTATTTTAGCAAAAGTTCCTGCGGCTCGAGCCAGCTTTGCGCTTTGA

Coding sequence (CDS)

ATGCCCCCTAACCTAAGTGGGCCTACCAGCAAAGCAACAGGGGCGGCGGCGTTCTTGAATGAAGTCGAGACGAACCGAATTAGCACTTCTCAGATCAGGCTAGGCCTCTCCAGCGGAGCTGGGCGCCGGGGCCCTGGATGCGCTAGCGATCAGCACATAGGGGAGTGGTTGCCCGGGAATGCATCAACAAAACTGCCCTTCCATATAGATCGTCGTGGCATGAACTCATTTCTCCTTTTCCCCACCCCTGCCCGAAATCCCGCTTTGGTGGGCTTCCCTCAAGGTGACACCGAAGGTCTACCTCCTTTAGTAGCTCGGCATCGGGAATCAATGAGTTTTTCAACACCCGAAGGTAGCCGCACAAGCCTAAGAGAGAGTGTAGGGGGTGCAGGTTCCTTCATTATTTTAGCAAAAGTTCCTGCGGCTCGAGCCAGCTTTGCGCTTTGA

Protein sequence

MPPNLSGPTSKATGAAAFLNEVETNRISTSQIRLGLSSGAGRRGPGCASDQHIGEWLPGNASTKLPFHIDRRGMNSFLLFPTPARNPALVGFPQGDTEGLPPLVARHRESMSFSTPEGSRTSLRESVGGAGSFIILAKVPAARASFAL
Homology
[Close]
BLAST of Moc09g15540 vs. NCBI nr
Match: KVI11367.1 (cytochrome c oxidase subunit I [Cynara cardunculus var. scolymus])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 33/58 (56.90%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 2   PPNLSGPTSKATGAAAFLNEVETNRISTSQIRLGLSSGAGRRGPGCASDQHIGEWLPG 60
           P +     S   GAAAFLN+V  NRI+TS IR GL S AG R PGC S+ HI E LPG
Sbjct: 173 PLSFGSDKSSPFGAAAFLNKVYPNRINTSHIRQGLYSRAGHRVPGCTSNWHIEESLPG 230

[Close]
BLAST of Moc09g15540 vs. ExPASy TrEMBL
Match: A0A103YLM2 (Cytochrome c oxidase subunit 1 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_010223 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.2e-06
Identity = 33/58 (56.90%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 2   PPNLSGPTSKATGAAAFLNEVETNRISTSQIRLGLSSGAGRRGPGCASDQHIGEWLPG 60
           P +     S   GAAAFLN+V  NRI+TS IR GL S AG R PGC S+ HI E LPG
Sbjct: 173 PLSFGSDKSSPFGAAAFLNKVYPNRINTSHIRQGLYSRAGHRVPGCTSNWHIEESLPG 230

The following BLAST results are available for this feature:
BLAST of Moc09g15540 vs. NCBI nr
Match NameE-valueIdentityDescription
KVI11367.11.9e-0556.90cytochrome c oxidase subunit I [Cynara cardunculus var. scolymus][more]
BLAST of Moc09g15540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g15540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A103YLM29.2e-0656.90Cytochrome c oxidase subunit 1 OS=Cynara cardunculus var. scolymus OX=59895 GN=C... [more]
BLAST of Moc09g15540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g15540.1Moc09g15540.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009987 cellular process
cellular_component GO:0016020 membrane