Moc09g15410 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g15410
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	K-box region and MADS-box transcription factor family protein
Location	chr9: 13014591 .. 13014950 (-)
RNA-Seq Expression	Moc09g15410
Synteny	Moc09g15410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGCGGCGAACCCTCAGACGACCTATCTAAGATTAGGGGGGAGATCCTCAGTAGTGGTGACCCTTTCACTCTTCCACGGACTGATACATGTACCGAATGCTCATACGGGAAAGTTTACTCCTGGGTCTGGAACCTGGGGGGTTGGGTTGCTCCGAGAAATCTCCTTTCTTTCTCGTCCACTCAGGGGGGTGCGGACACACCTGCGCGGATTACAGGTGACGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATGTAGACCCATCGGGCAGGGATAATCATTCTGGTCCTGGGAGAGGTGGCGACCATTCTCAAGAACCAAAAAGACTGAGCTGA

mRNA sequence

ATGAACCGCGGCGAACCCTCAGACGACCTATCTAAGATTAGGGGGGAGATCCTCAGTAGTGGTGACCCTTTCACTCTTCCACGGACTGATACATGTACCGAATGCTCATACGGGAAAGTTTACTCCTGGGTCTGGAACCTGGGGGGTTGGGTTGCTCCGAGAAATCTCCTTTCTTTCTCGTCCACTCAGGGGGGTGCGGACACACCTGCGCGGATTACAGGTGACGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATGTAGACCCATCGGGCAGGGATAATCATTCTGGTCCTGGGAGAGGTGGCGACCATTCTCAAGAACCAAAAAGACTGAGCTGA

Coding sequence (CDS)

ATGAACCGCGGCGAACCCTCAGACGACCTATCTAAGATTAGGGGGGAGATCCTCAGTAGTGGTGACCCTTTCACTCTTCCACGGACTGATACATGTACCGAATGCTCATACGGGAAAGTTTACTCCTGGGTCTGGAACCTGGGGGGTTGGGTTGCTCCGAGAAATCTCCTTTCTTTCTCGTCCACTCAGGGGGGTGCGGACACACCTGCGCGGATTACAGGTGACGGTTACAAGAATGGCGGGGAAGTGAACAGTACCCGACGACATTCAGGGATGGATGTAGACCCATCGGGCAGGGATAATCATTCTGGTCCTGGGAGAGGTGGCGACCATTCTCAAGAACCAAAAAGACTGAGCTGA

Protein sequence

MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFSSTQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS

Homology

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BLAST of Moc09g15410 vs. NCBI nr
Match: KAA0046436.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK26900.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 245.0 bits (624), Expect = 3.3e-61
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKV SWVWNLGGWVAP NLLSFS
Sbjct: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWNLGGWVAPINLLSFS 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 120
           STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS
Sbjct: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 119

[Close]

BLAST of Moc09g15410 vs. NCBI nr
Match: PWA94828.1 (hypothetical protein CTI12_AA016510 [Artemisia annua])

HSP 1 Score: 206.8 bits (525), Expect = 1.0e-49
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKVYSWVWNLGG  + ++ LS  
Sbjct: 1   MNRGEPPDDLSKIRGEILNSDDPFTLPRTDTCTECSYGKVYSWVWNLGG-CSEKSFLS-R 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 120
             +GGA TPARITGD YKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS
Sbjct: 61  PLRGGAGTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 117

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BLAST of Moc09g15410 vs. NCBI nr
Match: YP_009974684.1 (hypothetical protein JAA21_mgp17 [Helianthus grosseserratus] >KAF5753198.1 hypothetical protein HanXRQr2_MTg0835651 [Helianthus annuus] >QNJ33645.1 hypothetical protein [Helianthus grosseserratus] >QZL38846.1 hypothetical protein [Helianthus occidentalis] >QZL38926.1 hypothetical protein [Helianthus tuberosus])

HSP 1 Score: 205.7 bits (522), Expect = 2.2e-49
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKV SWVWNLGG  + ++ LS  
Sbjct: 1   MNRGEPPDDLSKIRGEILNSDDPFTLPRTDTCTECSYGKVDSWVWNLGG-CSEKSFLS-R 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 120
             +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS
Sbjct: 61  PLRGGADTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 117

[Close]

BLAST of Moc09g15410 vs. NCBI nr
Match: YP_009974724.1 (hypothetical protein I9989_mgp20 [Helianthus strumosus] >QNJ33685.1 hypothetical protein [Helianthus strumosus])

HSP 1 Score: 203.8 bits (517), Expect = 8.5e-49
Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEP DDLSKIRGEIL+S DPFTLPR DTCTECSYGKV SWVWNLGG  + ++ LS  
Sbjct: 1   MNRGEPPDDLSKIRGEILNSDDPFTLPRADTCTECSYGKVDSWVWNLGG-CSEKSFLS-R 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 120
             +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS
Sbjct: 61  PLRGGADTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 117

[Close]

BLAST of Moc09g15410 vs. NCBI nr
Match: YP_009305182.1 (hypothetical protein HESP_p38 [Hesperelaea palmeri] >XP_022870245.1 uncharacterized protein LOC111389549 [Olea europaea var. sylvestris] >AOO96400.1 hypothetical protein HESP_p38 [Hesperelaea palmeri])

HSP 1 Score: 195.3 bits (495), Expect = 3.0e-46
Identity = 99/117 (84.62%), Postives = 101/117 (86.32%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKV SWVW L      R +LSFS
Sbjct: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWLL------REILSFS 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKR 118
           STQGGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRDNHSGPGR    S+  KR
Sbjct: 61  STQGGADTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRWRPFSRTKKR 111

[Close]

BLAST of Moc09g15410 vs. ExPASy TrEMBL
Match: A0A5A7TWJ9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83073G00020 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.6e-61
Identity = 117/119 (98.32%), Postives = 117/119 (98.32%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKV SWVWNLGGWVAP NLLSFS
Sbjct: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVDSWVWNLGGWVAPINLLSFS 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 120
           STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS
Sbjct: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 119

[Close]

BLAST of Moc09g15410 vs. ExPASy TrEMBL
Match: A0A2U1Q9Z6 (Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA016510 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.9e-50
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKVYSWVWNLGG  + ++ LS  
Sbjct: 1   MNRGEPPDDLSKIRGEILNSDDPFTLPRTDTCTECSYGKVYSWVWNLGG-CSEKSFLS-R 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 120
             +GGA TPARITGD YKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS
Sbjct: 61  PLRGGAGTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 117

[Close]

BLAST of Moc09g15410 vs. ExPASy TrEMBL
Match: A0A7N0RCK1 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 6.4e-50
Identity = 104/119 (87.39%), Postives = 108/119 (90.76%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEPSDDLSKIRGEILSSGDPFTLPRT TCTECSYGKVYS VWN GG  + ++ LS  
Sbjct: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTYTCTECSYGKVYSRVWNRGG-CSDKSFLS-C 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 120
             +GGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS
Sbjct: 61  PLRGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 117

[Close]

BLAST of Moc09g15410 vs. ExPASy TrEMBL
Match: A0A7G8JSU7 (Uncharacterized protein OS=Helianthus grosseserratus OX=73291 GN=orf117 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 102/119 (85.71%), Postives = 107/119 (89.92%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEP DDLSKIRGEIL+S DPFTLPRTDTCTECSYGKV SWVWNLGG  + ++ LS  
Sbjct: 1   MNRGEPPDDLSKIRGEILNSDDPFTLPRTDTCTECSYGKVDSWVWNLGG-CSEKSFLS-R 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 120
             +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS
Sbjct: 61  PLRGGADTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 117

[Close]

BLAST of Moc09g15410 vs. ExPASy TrEMBL
Match: A0A7G8JSY7 (Uncharacterized protein OS=Helianthus strumosus OX=382522 GN=orf117 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.1e-49
Identity = 101/119 (84.87%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MNRGEPSDDLSKIRGEILSSGDPFTLPRTDTCTECSYGKVYSWVWNLGGWVAPRNLLSFS 60
           MNRGEP DDLSKIRGEIL+S DPFTLPR DTCTECSYGKV SWVWNLGG  + ++ LS  
Sbjct: 1   MNRGEPPDDLSKIRGEILNSDDPFTLPRADTCTECSYGKVDSWVWNLGG-CSEKSFLS-R 60

Query: 61  STQGGADTPARITGDGYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 120
             +GGADTPARITGD YKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS
Sbjct: 61  PLRGGADTPARITGDSYKNGGEVNSTRRHSGMDVDPSGRDNHSGPGRGGDHSQEPKRLS 117

The following BLAST results are available for this feature:

BLAST of Moc09g15410 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046436.1	3.3e-61	98.32	reverse transcriptase [Cucumis melo var. makuwa] >TYK26900.1 reverse transcripta...	[more]
PWA94828.1	1.0e-49	85.71	hypothetical protein CTI12_AA016510 [Artemisia annua]	[more]
YP_009974684.1	2.2e-49	85.71	hypothetical protein JAA21_mgp17 [Helianthus grosseserratus] >KAF5753198.1 hypot...	[more]
YP_009974724.1	8.5e-49	84.87	hypothetical protein I9989_mgp20 [Helianthus strumosus] >QNJ33685.1 hypothetical...	[more]
YP_009305182.1	3.0e-46	84.62	hypothetical protein HESP_p38 [Hesperelaea palmeri] >XP_022870245.1 uncharacteri...	[more]

BLAST of Moc09g15410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g15410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWJ9	1.6e-61	98.32	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold83...	[more]
A0A2U1Q9Z6	4.9e-50	85.71	Uncharacterized protein OS=Artemisia annua OX=35608 GN=CTI12_AA016510 PE=4 SV=1	[more]
A0A7N0RCK1	6.4e-50	87.39	Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1	[more]
A0A7G8JSU7	1.1e-49	85.71	Uncharacterized protein OS=Helianthus grosseserratus OX=73291 GN=orf117 PE=4 SV=...	[more]
A0A7G8JSY7	4.1e-49	84.87	Uncharacterized protein OS=Helianthus strumosus OX=382522 GN=orf117 PE=4 SV=1	[more]

BLAST of Moc09g15410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..119
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g15410.1	Moc09g15410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003964	RNA-directed DNA polymerase activity