Moc09g15160 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g15160
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCob intron3 ORF
Locationchr9: 12952068 .. 12953341 (+)
RNA-Seq ExpressionMoc09g15160
SyntenyMoc09g15160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACTACCCTGACTTGGCACTTGACTTAACCTGCCTTCGAGACAGAGTGATGGTGCCTCCCCCTCATGAGCAGCCAGCCCTTACCTGCCTTGAACTACAGGAGCGGTCTTGCATACACACATATGTAAATCAGGCCTTTTATCGAGAGTTCTTCTAGGCCTTAGTCAAAGAATTTACTAAATACTAGAGTGCTGCTACAGGGAATACTACCTTGACTCTGCTACTTCTAACGCTCGAACTGTCCGAGCTCCTGCAAGAGGATTAGCTCAAGGAAAAGCACTTGAAGTAACGGATGAGCGCCCTAGCGCATAAGGACTAGACTTTGATAAAGTGGAATTCAAGTCGATATTGAAATCCTACACCCTCAAAGAAAGCCTTTTTCGATAGTTGTTAGAGGTGAACTAGTTCCTATCTGATCTTTTTCAGAGGCCTGTAGCAACAAGAAAGGAGGCATAGAGAGAAGGCTCTCGAGAGGCTAACAGAAGAGCCTGGTGAGCTACCAACTAGCATAGAGCAGAGCTAGTATCCATATTTTAATCTTTAACTAGAGAAGGAAATCGATTAAAGCCAGATTACCGCCTATGGTACACTAAGAATTTCATACTACATGAGGGATACTCTAAAATAGTAAAGAAAGTCCCACTCATTCCTGAAAGAAAGTAAGAAAGATCACGAGCTTCTGTAGGCTTAAAAAAGAACGAGAGTTGTGACAGGTGATGAACATCAATGAGATGACTTGAACTGGCCTTCTGTTGAAAGTCAAATTGCCATAGATCGCGATTCTTCGTCTGATCTTCTTGTGTATTCATCATTGCATCCTTTTTCTTTTGTTTCGGCCGAGACTTTTCGACTCTTGATGTGAAGATGCAAGACTTTATGAGTAAATCAGCGAGAATTAGGTATGTGCGCTACGCTGACGATATAGCTTTTGCTATGTTGGAAGGAGCCAACTCAGAAATGGTAAGCCAAGGGTTCAAGCAATTCTTTAATGAGGCTTTGACGGAGCTCAAACTGGAAGCAACTAGTTTGGAGCTCGTTCGAGGAATAAGCAAGCCATGCTCTACCTTAGTTCTCGGAGTCCTAATATCAATTCGTCCGGACAGAAACTTGGAGTTAAGGGCACCCGGTTCAAAAAAAAATGTTTCAATCAATCGACAACGACATAAGGAAGATACAAGGCAAAGGCGTAAAACAAAATGTGAGCGCTCCTTCCCCTCGTATTCCAGTATCTCGCTTTCTTTTCGTGTTGTTGCAATGCTAACGAGGTACTAG

mRNA sequence

ATGCACTACCCTGACTTGGCACTTGACTTAACCTGCCTTCGAGACAGAGTGATGGTGCCTCCCCCTCATGAGCAGCCAGCCCTTACCTGCCTTGAACTACAGGAGCGGGAATACTACCTTGACTCTGCTACTTCTAACGCTCGAACTGTCCGAGCTCCTGCAAGAGGATTAGCTCAAGGAAAAGCACTTGAACAACAAGAAAGGAGGCATAGAGAGAAGGCTCTCGAGAGGCTAACAGAAGAGCCTGACTTTTCGACTCTTGATGTGAAGATGCAAGACTTTATGAGTAAATCAGCGAGAATTAGGTATGTGCGCTACGCTGACGATATAGCTTTTGCTATGTTGGAAGGAGCCAACTCAGAAATGGTAAGCCAAGGGTTCAAGCAATTCTTTAATGAGGCTTTGACGGAGCTCAAACTGGAAGCAACTAGTTTGGAGCTCGTTCGAGGAATAAGCAAGCCATGCTCTACCTTAGTTCTCGGAGTCCTAATATCAATTCGTCCGGACAGAAACTTGGAGTTAAGGGCACCCGGTTCAAAAAAAAATGTTTCAATCAATCGACAACGACATAAGGAAGATACAAGGCAAAGGCGTAAAACAAAATGTGAGCGCTCCTTCCCCTCGTATTCCAGTATCTCGCTTTCTTTTCGTGTTGTTGCAATGCTAACGAGGTACTAG

Coding sequence (CDS)

ATGCACTACCCTGACTTGGCACTTGACTTAACCTGCCTTCGAGACAGAGTGATGGTGCCTCCCCCTCATGAGCAGCCAGCCCTTACCTGCCTTGAACTACAGGAGCGGGAATACTACCTTGACTCTGCTACTTCTAACGCTCGAACTGTCCGAGCTCCTGCAAGAGGATTAGCTCAAGGAAAAGCACTTGAACAACAAGAAAGGAGGCATAGAGAGAAGGCTCTCGAGAGGCTAACAGAAGAGCCTGACTTTTCGACTCTTGATGTGAAGATGCAAGACTTTATGAGTAAATCAGCGAGAATTAGGTATGTGCGCTACGCTGACGATATAGCTTTTGCTATGTTGGAAGGAGCCAACTCAGAAATGGTAAGCCAAGGGTTCAAGCAATTCTTTAATGAGGCTTTGACGGAGCTCAAACTGGAAGCAACTAGTTTGGAGCTCGTTCGAGGAATAAGCAAGCCATGCTCTACCTTAGTTCTCGGAGTCCTAATATCAATTCGTCCGGACAGAAACTTGGAGTTAAGGGCACCCGGTTCAAAAAAAAATGTTTCAATCAATCGACAACGACATAAGGAAGATACAAGGCAAAGGCGTAAAACAAAATGTGAGCGCTCCTTCCCCTCGTATTCCAGTATCTCGCTTTCTTTTCGTGTTGTTGCAATGCTAACGAGGTACTAG

Protein sequence

MHYPDLALDLTCLRDRVMVPPPHEQPALTCLELQEREYYLDSATSNARTVRAPARGLAQGKALEQQERRHREKALERLTEEPDFSTLDVKMQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLELVRGISKPCSTLVLGVLISIRPDRNLELRAPGSKKNVSINRQRHKEDTRQRRKTKCERSFPSYSSISLSFRVVAMLTRY
Homology
BLAST of Moc09g15160 vs. NCBI nr
Match: QWQ49911.1 (hypothetical protein [Zelkova schneideriana])

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-35
Identity = 88/106 (83.02%), Postives = 93/106 (87.74%), Query Frame = 0

Query: 87  LDVKMQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLE 146
           LDVKMQDFMSK ARI+YVRYADDIAF + EGANSEMVSQGFKQFFNEALTELKLEATSLE
Sbjct: 8   LDVKMQDFMSKEARIKYVRYADDIAFDIKEGANSEMVSQGFKQFFNEALTELKLEATSLE 67

Query: 147 LVRGISKPCSTLVLGVLISIRPDRNLELRAPGSKKNVSINRQRHKE 193
           LVRGISKPCSTLVLGVLISIRPDR LELRA       +INR + K+
Sbjct: 68  LVRGISKPCSTLVLGVLISIRPDRQLELRA-------AINRLKIKK 106

BLAST of Moc09g15160 vs. NCBI nr
Match: DAD25595.1 (TPA_asm: hypothetical protein HUJ06_027059 [Nelumbo nucifera] >DAD25646.1 TPA_asm: hypothetical protein HUJ06_027110 [Nelumbo nucifera] >DAD25659.1 TPA_asm: hypothetical protein HUJ06_027123 [Nelumbo nucifera] >DAD49315.1 TPA_asm: hypothetical protein HUJ06_032036 [Nelumbo nucifera] >DAD49591.1 TPA_asm: hypothetical protein HUJ06_000103 [Nelumbo nucifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-17
Identity = 49/100 (49.00%), Postives = 73/100 (73.00%), Query Frame = 0

Query: 88  DVKMQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLEL 147
           D+ ++  + +  ++RYVRYADD+ F +L+G +SE VSQ F++ F EAL  +KLEATS EL
Sbjct: 88  DLMIRSILEQEDKLRYVRYADDMLFGILQGVDSESVSQRFQKLFREALDTIKLEATSHEL 147

Query: 148 VRGISKPCSTLVLGVLISIRPDRNLELRAPGSKKNVSINR 188
           +RG + PC+TLVLGVL+SI+ +  LE+RAP  +    +N+
Sbjct: 148 IRGTTIPCATLVLGVLVSIKREGALEMRAPIKRFKRKLNQ 187

BLAST of Moc09g15160 vs. NCBI nr
Match: KUM47405.1 (cob intron3 ORF [Picea glauca] >QHR89591.1 putative group II intron reverse transcriptase [Picea sitchensis])

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-13
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 0

Query: 87  LDVKMQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLE 146
           LD K+ +FM     + YVRYADD+ FA+ +G +SE V   +K+FF +AL +LKL  TS+E
Sbjct: 88  LDFKIHEFMETEESLGYVRYADDMIFAIKKGVDSERVYLRYKEFFQKALADLKLAETSIE 147

Query: 147 LVRGISKPCSTLVLGVLISIRPDRNLELRAP 178
           L+RGI  P  T VLG+++SI P   LE RAP
Sbjct: 148 LIRGI--PRKTRVLGLVVSIGPTGTLETRAP 176

BLAST of Moc09g15160 vs. NCBI nr
Match: YP_009381647.1 (hypothetical protein AEK19_MT1231 [Utricularia reniformis] >ART31444.1 hypothetical protein AEK19_MT1231 [Utricularia reniformis])

HSP 1 Score: 70.5 bits (171), Expect = 2.1e-08
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0

Query: 87  LDVKMQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQG 127
           LD++MQDF+S+ AR+RYVRYADDIAFAMLEGANSEMVS G
Sbjct: 8   LDIQMQDFLSQEARMRYVRYADDIAFAMLEGANSEMVSLG 47

BLAST of Moc09g15160 vs. NCBI nr
Match: KAB8468469.1 (hypothetical protein FH972_025303 [Carpinus fangiana])

HSP 1 Score: 66.6 bits (161), Expect = 3.1e-07
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 87  LDVKMQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLE 146
           +D ++   M     +RY RYADD+ F  L+GA+SE   + F+  F E L  LKLE + +E
Sbjct: 340 VDKEVSRLMETETTLRYARYADDMIFGFLKGADSEAAYKRFRTSFRENLEALKLEDSCIE 399

Query: 147 LVRGISKPCSTLVLGVLISIRPDRNLELRAP 178
           L+R    P  T VLG++  + P   LE RAP
Sbjct: 400 LLR--RSPWKTRVLGLITFLGPKGTLETRAP 428

BLAST of Moc09g15160 vs. ExPASy TrEMBL
Match: A0A117NGV6 (Cob intron3 ORF OS=Picea glauca OX=3330 GN=ymfcob PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 8.1e-14
Identity = 46/91 (50.55%), Postives = 62/91 (68.13%), Query Frame = 0

Query: 87  LDVKMQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLE 146
           LD K+ +FM     + YVRYADD+ FA+ +G +SE V   +K+FF +AL +LKL  TS+E
Sbjct: 88  LDFKIHEFMETEESLGYVRYADDMIFAIKKGVDSERVYLRYKEFFQKALADLKLAETSIE 147

Query: 147 LVRGISKPCSTLVLGVLISIRPDRNLELRAP 178
           L+RGI  P  T VLG+++SI P   LE RAP
Sbjct: 148 LIRGI--PRKTRVLGLVVSIGPTGTLETRAP 176

BLAST of Moc09g15160 vs. ExPASy TrEMBL
Match: A0A1Y0B229 (Uncharacterized protein OS=Utricularia reniformis OX=192314 GN=AEK19_MT1231 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.0e-08
Identity = 33/40 (82.50%), Postives = 38/40 (95.00%), Query Frame = 0

Query: 87  LDVKMQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQG 127
           LD++MQDF+S+ AR+RYVRYADDIAFAMLEGANSEMVS G
Sbjct: 8   LDIQMQDFLSQEARMRYVRYADDIAFAMLEGANSEMVSLG 47

BLAST of Moc09g15160 vs. ExPASy TrEMBL
Match: A0A5N6L0M6 (Reverse transcriptase domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_025303 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-07
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 0

Query: 87  LDVKMQDFMSKSARIRYVRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLE 146
           +D ++   M     +RY RYADD+ F  L+GA+SE   + F+  F E L  LKLE + +E
Sbjct: 340 VDKEVSRLMETETTLRYARYADDMIFGFLKGADSEAAYKRFRTSFRENLEALKLEDSCIE 399

Query: 147 LVRGISKPCSTLVLGVLISIRPDRNLELRAP 178
           L+R    P  T VLG++  + P   LE RAP
Sbjct: 400 LLR--RSPWKTRVLGLITFLGPKGTLETRAP 428

BLAST of Moc09g15160 vs. ExPASy TrEMBL
Match: A0A2T8I3J9 (Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_9G354900 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.7e-07
Identity = 34/67 (50.75%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 104 VRYADDIAFAMLEGANSEMVSQGFKQFFNEALTELKLEATSLELVRGISKPC-STLVLGV 163
           V Y D+  FA+ +G  SE VSQ F+Q   E+L ELKL   SLEL+R +SKPC + ++ GV
Sbjct: 15  VIYVDNFVFAIKKGPESERVSQSFQQMLKESLAELKLFLKSLELIREVSKPCYNYIISGV 74

Query: 164 LISIRPD 170
           L+SI  D
Sbjct: 75  LVSIHSD 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
QWQ49911.11.2e-3583.02hypothetical protein [Zelkova schneideriana][more]
DAD25595.11.9e-1749.00TPA_asm: hypothetical protein HUJ06_027059 [Nelumbo nucifera] >DAD25646.1 TPA_as... [more]
KUM47405.11.7e-1350.55cob intron3 ORF [Picea glauca] >QHR89591.1 putative group II intron reverse tran... [more]
YP_009381647.12.1e-0882.50hypothetical protein AEK19_MT1231 [Utricularia reniformis] >ART31444.1 hypotheti... [more]
KAB8468469.13.1e-0740.66hypothetical protein FH972_025303 [Carpinus fangiana][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A117NGV68.1e-1450.55Cob intron3 ORF OS=Picea glauca OX=3330 GN=ymfcob PE=4 SV=1[more]
A0A1Y0B2291.0e-0882.50Uncharacterized protein OS=Utricularia reniformis OX=192314 GN=AEK19_MT1231 PE=4... [more]
A0A5N6L0M61.5e-0740.66Reverse transcriptase domain-containing protein OS=Carpinus fangiana OX=176857 G... [more]
A0A2T8I3J95.7e-0750.75Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_9G354900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 61..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..202
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 185..202

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g15160.1Moc09g15160.1mRNA