Moc09g15070 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g15070
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr9: 12927462 .. 12928882 (+)
RNA-Seq ExpressionMoc09g15070
SyntenyMoc09g15070
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCAGTCCATTCTTGTCGCAGTTGTTGGTTTGTTGTACTATTCTGTACCTCTCTCTTTGATAGAAAGACGTTCGGGAGCTGGGAGGGCCTATCGTGAGGGAACTCTCCTTTTCACGGTAGGCGAAGGTAAAGCGGGAGCTGCGTATGTCCACGGTGATCAAGGCAGAGCGACTCCTTCTTTAAAAGAGGTTGGTTTTCTCGAAACTGTTAGATCCGTTTTCGTTAAAGAAAAAATAGGAGCTCTTGGTTTGGCCGATGTCGATTCGTATGGCAATGCGGACTCGACTCAGGATGAGGATTCCTCTTTGAATAATGCTGCTATGAGCCGAAAAAGCTGGCAAGCTATCTCGCTAAACGAAAGGAAAAAGCACGTACGGGTTGCCCTCGTTGCAAGGGGCGGGGGCCAGCCAGCCAAAGAAGGTCAGTAGGACTCGGTTAGGACCCTTGATCCGGTTCAGCTAGGTTCTTCCATGCGATAATGTATGCGTATCGGTATCCTCTTCAGGACCGGTTGCTTCTGATTTTGGTTTATACGTTTGGAGAAACCTGCTAAGCCCGCCTTTCTTACCCGGTGTGATTCAATCTTTCAGCTCAAACTTTCCTATCGTCCTTAGGAAAAGGTAAGAGTACGACTACCTTTTCCTTTTCTTGCCCGAGCCAAGGGATCATTCAGTTTCTACCAAAAAGTTCGCTATCTATTAGTTGCCGTAATCGAATGTATTTCTCATTTCGTGTTAGCTCCTCCAAGAGCTTCCTGGTCCGTAGTAGACGAAACCTTGGACTTCTATCGGACTTATAGCATTGCCTGGTGAGCTCGCCGTTGAGGGTTGGCCTTACAGGAGATCGAGAGCCTTTCTTTCCCTGCCTGGTATGCTTTCCCGCTTATCGCGCAACTAGCCAACTAGCCAAAGAGAGAGGGAGAGGGATCATGCCAATTTGTATGTGCATTTTGTCCGTCTTGTACTTGCCTGCTTAGCTTTCTTAGCCAACATCTCCGTTTCCCTCGAACCAAGAGGTCCTGCTTATCCAGACCCAACAGTCACACTGTTTTTCAGCCGAAAGACGGATTTTTTCATAAAGTCGGTTCATAGATCAAGAAACAATGAGGCAGCTTACAGGGACGGTTATGCGATACGTCTTTTCATACTCGCCTTTTCTTTAACCCAGCTATCAACCTAGCCATTCTCGCTTGTTGCTTTAAGGGGTCTCTCCACTTTATGTGGGTATATATATAGGCTTCGTCGAGAATACCAAGTCAATCGGCAACTACTGTACAGGTTTCGCTCGTCCTGTGAGGGAGGAACGGTTCCGGGATACCTCGAGGCCCTTTTTCGTATATTTCATCATTAGCAACCCCTCTTTATCGATCGTCAAAAACATATGCTTGATCAGCTTCCCTAGTGGTATTGCCTTGTAA

mRNA sequence

ATGAGTCAGTCCATTCTTGTCGCAGTTGTTGGTTTGTTGTACTATTCTGTACCTCTCTCTTTGATAGAAAGACGTTCGGGAGCTGGGAGGGCCTATCGTGAGGGAACTCTCCTTTTCACGGTAGGCGAAGGTAAAGCGGGAGCTGCGTATGTCCACGGTGATCAAGGCAGAGCGACTCCTTCTTTAAAAGAGGTTGGTTTTCTCGAAACTGTTAGATCCGTTTTCGTTAAAGAAAAAATAGGAGCTCTTGGTTTGGCCGATGTCGATTCGTATGGCAATGCGGACTCGACTCAGGATGAGGATTCCTCTTTGAATAATGCTGCTATGAGCCGAAAAAGCTGGCAAGCTATCTCGCTAAACGAAAGGAAAAAGCACGTACGGGTTGCCCTCGTTGCAAGGGGCGGGGGCCAGCCAGCCAAAGAAGGACCGGTTGCTTCTGATTTTGGTTTATACGTTTGGAGAAACCTGCTAAGCCCGCCTTTCTTACCCGGTGTGATTCAATCTTTCAGCTCAAACTTTCCTATCACGAAACCTTGGACTTCTATCGGACTTATAGCATTGCCTGGTGAGCTCGCCGTTGAGGGTTGGCCTTACAGGAGATCGAGAGCCTTTCTTTCCCTGCCTGCTTTCTTAGCCAACATCTCCGTTTCCCTCGAACCAAGAGGTCCTGCTTATCCAGACCCAACAGTCACACTGTTTTTCAGCCGAAAGACGGATTTTTTCATAAAGTCGGTTCATAGATCAAGAAACAATGAGGCAGCTTACAGGGACGGTTATGCGATACGCTTCGTCGAGAATACCAAGTCAATCGGCAACTACTGTACAGGTTTCGCTCGTCCTGTGAGGGAGGAACGGTTCCGGGATACCTCGAGGCCCTTTTTCGTATATTTCATCATTAGCAACCCCTCTTTATCGATCGTCAAAAACATATGCTTGATCAGCTTCCCTAGTGGTATTGCCTTGTAA

Coding sequence (CDS)

ATGAGTCAGTCCATTCTTGTCGCAGTTGTTGGTTTGTTGTACTATTCTGTACCTCTCTCTTTGATAGAAAGACGTTCGGGAGCTGGGAGGGCCTATCGTGAGGGAACTCTCCTTTTCACGGTAGGCGAAGGTAAAGCGGGAGCTGCGTATGTCCACGGTGATCAAGGCAGAGCGACTCCTTCTTTAAAAGAGGTTGGTTTTCTCGAAACTGTTAGATCCGTTTTCGTTAAAGAAAAAATAGGAGCTCTTGGTTTGGCCGATGTCGATTCGTATGGCAATGCGGACTCGACTCAGGATGAGGATTCCTCTTTGAATAATGCTGCTATGAGCCGAAAAAGCTGGCAAGCTATCTCGCTAAACGAAAGGAAAAAGCACGTACGGGTTGCCCTCGTTGCAAGGGGCGGGGGCCAGCCAGCCAAAGAAGGACCGGTTGCTTCTGATTTTGGTTTATACGTTTGGAGAAACCTGCTAAGCCCGCCTTTCTTACCCGGTGTGATTCAATCTTTCAGCTCAAACTTTCCTATCACGAAACCTTGGACTTCTATCGGACTTATAGCATTGCCTGGTGAGCTCGCCGTTGAGGGTTGGCCTTACAGGAGATCGAGAGCCTTTCTTTCCCTGCCTGCTTTCTTAGCCAACATCTCCGTTTCCCTCGAACCAAGAGGTCCTGCTTATCCAGACCCAACAGTCACACTGTTTTTCAGCCGAAAGACGGATTTTTTCATAAAGTCGGTTCATAGATCAAGAAACAATGAGGCAGCTTACAGGGACGGTTATGCGATACGCTTCGTCGAGAATACCAAGTCAATCGGCAACTACTGTACAGGTTTCGCTCGTCCTGTGAGGGAGGAACGGTTCCGGGATACCTCGAGGCCCTTTTTCGTATATTTCATCATTAGCAACCCCTCTTTATCGATCGTCAAAAACATATGCTTGATCAGCTTCCCTAGTGGTATTGCCTTGTAA

Protein sequence

MSQSILVAVVGLLYYSVPLSLIERRSGAGRAYREGTLLFTVGEGKAGAAYVHGDQGRATPSLKEVGFLETVRSVFVKEKIGALGLADVDSYGNADSTQDEDSSLNNAAMSRKSWQAISLNERKKHVRVALVARGGGQPAKEGPVASDFGLYVWRNLLSPPFLPGVIQSFSSNFPITKPWTSIGLIALPGELAVEGWPYRRSRAFLSLPAFLANISVSLEPRGPAYPDPTVTLFFSRKTDFFIKSVHRSRNNEAAYRDGYAIRFVENTKSIGNYCTGFARPVREERFRDTSRPFFVYFIISNPSLSIVKNICLISFPSGIAL
Homology
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BLAST of Moc09g15070 vs. NCBI nr
Match: XP_038876762.1 (LOW QUALITY PROTEIN: ribosomal protein S4, mitochondrial [Benincasa hispida])

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-23
Identity = 64/86 (74.42%), Postives = 69/86 (80.23%), Query Frame = 0 

Query: 39  FTVGEGKAGAAYVHGDQGRATPSLKEVGFLETVRSVFVKEKIGALGLADVDSYGNADSTQ 98
           FTVG+GK G AYVHGDQGRATPSLKEVGF      +FVKEKI ALGLADVDSYGNADSTQ
Sbjct: 113 FTVGKGKGGIAYVHGDQGRATPSLKEVGF-----PIFVKEKIRALGLADVDSYGNADSTQ 172

Query: 99  DEDSSLNNAAMSRKSWQAISLNERKK 125
           DEDS+ +NAAMSRKSW+   L    K
Sbjct: 173 DEDSAFHNAAMSRKSWERGKLKPTPK 193

The following BLAST results are available for this feature:
BLAST of Moc09g15070 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038876762.11.5e-2374.42LOW QUALITY PROTEIN: ribosomal protein S4, mitochondrial [Benincasa hispida][more]
BLAST of Moc09g15070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g15070 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g15070 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g15070.1Moc09g15070.1mRNA