Moc09g14690 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g14690
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr9: 12620875 .. 12626158 (+)
RNA-Seq ExpressionMoc09g14690
SyntenyMoc09g14690
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAACATGGAAAACACACTATGTTCGGAAAATGCACCAGGTGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCACTACCGCTTTTGGGTGTTGCAGAGGCTAGGGTAACCTACAATCATATGCTTATGTGTGATTACAATCCTAGAGAATATCTACCAACTCATTTGCATTATAGGTCAGAGGGCCTATGCCTAGGATCATGTTTTATGCGCTTATTCCTAAGTCACATCCCATATTGGTTTCCTATTATTTTGCCTAACTCACCTTTCCCAAGGTTGGGCTTGTTGGGTGTGTTGCCCTAAACTCGTAGTTTGTATTTTGTAAAAACAAATGTCTATTTAATAAAGTTTTATTCAATAAATTTGTTGTTGAATCATAGCTTTGCATTATCCAAAATCCAATAAACTAAACATGCAAGGTTATTTGTGATGTAATTGGGACAGTATATATACTGGGTATATAGTTGATATACGGGGTATATATTTGATATACCCCTGATATATGAATGGATAATGTCCCGTGAATAACCTAAAGGGTCTATAGTATATGGATAAGGCCGGACTGCGAAATCGGCAATCTTTAGTTGTAACACCGTTAACTAATAGATTGCCATTTCTTAGGATGACCAAGCAACTCATTCTCAATCCTGAGTGAGTTATGGACTCCTGCCCCTGAGGGCTCGTTCTTTGATCAGGATGGGTGAGAGTGGTCTGAGTCGCCGACTCAACATTCCTACCATTTTGGGGACGAGACCGAGTGGGGAGCTGGGAACATAACTTCACAAGATGGAATTTACTCCTCCCCTACTTTAGGGGAGTAAATGAGTGTTCCCTTAAATGCTGACTCCGAGACTTGAACAAGGGGCCCCACCCTCTCATTGGCCGAGAGGGACTTCCGGTTATTGGTTGGACCATAACCGGGTTGTTCATTAGAGGAGCAGTGGTGTTTAAGGAGTAAGATGTAACTCAGGGGTAAAATGGTAATTTGACCCAACTTGAGTTACAAACACTTGTGAAGGATTGACTCGTCATTAATGGTCGTATATCCATGGACACGAAAACATTCTGCAGTGAGAAGAGTGCAACTGCGGGTCTTTAGTGGAATGACCCGTAGTTAACGAATCTAGATTAACTCGGTCAATGAGTTTGACCGATTAATCTTGCATCGTTGGAGCTTCGGATCTGTAGGTCCATTAGGTCTCCTTGCTAGCTCATAACGGGTAAAACGAGGATGAAGTTTTTGGAAGAATTTGAATTGTTCAAATTACTTAAGGGATTATATGTATATTGATACATTATAATATATAGTTAATTATAAATTAAAACTATATATTATGAGAGAAATTATTTGAATGAGATTCAAATAAAATTAATATGAATAAGATTCATATTAAAACTATAGGTTAAAAATAATGTGCATAAGATGTACATTAGAACTATAGGTTATACGAGAGAAATGTTTTAGAATATGATTCTAATTTTATAAATAATTAAGTGTTAATTATTTATGTATATATATATTTATTAATTATTAATTGGATTAATTATTAATTATATTAATTAATTTGATTAATTATATATATATATATTAATTATTATATATATATTTTAATTATTATTATATATATATATTATATATATATATTAATATTAATATTAATAATATTATTAATATTAACTCCCCTGCAAAATTGCAGGGGAGTGGGAGGAGTTGTGACGTGGGGAGTTACCCCACGTCACCCTTCTTCTTCCTCTCCAAGTGTTGGAGAAGCAGAAGAAGAAGTGAGATATAGAACAAGAAAAAGAACTCTCATCCAATTTCTCTCAAAAACTCTCTCAATCTCTCCCTCTCTTCAATCAAGGTGCTACCGCAAGCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGACGTAGTGGTGGTGTTCGTGGGAAACCGTAGAAGAAAAGTTCTTCAAAGGTAATGGTTTCCCCTGTATTTTCCCTTTTTCAATTTCGATTTTGTATCCCTAAAATCAGCAACGAAAATCCGCTTCCGCTCCGGGAATCACATCCCTTCAGGGTTTTGGTGTATAAATCAAGTTCCCACTGGCCAAATGGAAAAAAGACGATTTCTTATTTTCAAGTATTATTTGTTTCTTGTTTTTGTTGTTTATAAATGATCGATATTAATTAAATTGATGTCTTAATTCATATTGATTGTTCTACTACTACTCATGAGTTTGTGATATGTAATTATCATGAATGATTGAATTAACTATTAAGTAGCAATGAGTTGACATATTCCATGGTACATAGTGTCACAATCGCACTTTATTGGGAATCATAAGGTAATTGTTCGGTACTTGTTTCTACCCACAATCAAGTCAGCCAACTAAACGTCGGATAGTCGATGGCAAGATGGCTATATGTCACAACCTCCACCCTCATTCTCGAGAAAACGGTTTTGGAATACAGTATTAGAGAAAAAACATTTGAAAGCATTTTGGAAAGCTTGTTGTACAGCTTGTATGCAAGAGAATAGATTAGCGGCAAGACAAGAATACAACACAAGGTAGGAAGGTGACTAGGTGTATCCCTTATAGTACATTTTGGACCATCTTGTATCTGGCAGGCATGAACATGCAAAGTGGCGAGGAGCCACTCACCAAAAAAAGTACAAGGAAAAGTAAGCAACATGCAAAACTAAATACAAGGCATAAAAGTATGTGGAAAGAGGTCGTTGGCATGCAACCACATGCAATTGACCATGGACAAGCATGACCGTGACATTCTCCCCCACTTAAATGGTTGACGTCCCAATCAACCATTGTGCTTCAACTCCTCAATCTCTGTTGCTACTGTCTTCAGGTCTTCGGCACGCTCCCAACTGATCTCTTGATCTGGGAGCCCCTTCCACTTGACTAAGAATTGTTGCACGTCTCTTCGTGGTCTTTCAACATGGTGTGTTGTCTCAGCTAGAATTTTTTCAACTTCTTTGTCAATCTTGTTTGTCAACGTGATCGCTAGACAAGTTATCTCATTTCTTGTGGGGTCGATGGTATCAAGATGATATGGCTTCAAGTTGCTCACATGGATCACTGGATGTATCTTCATCCACGAGGGTAGTTATACCCTGTAGGATGTCTTGCCCACCTTCAGAAGAACATAACTGGTCATTCGTATTTTCGTATAAGATGTTGGTCTTTATTCCCTTAGAAGCAAAGTTGTCCATGTCTCAACTTGATAAGGACTTGGTCTTCTACTTGAAACTTTGAAGGCATGCGCTTCTTGTCTGCCCAGTTTTTCATGTATTTAGACGTCTTTTTGGGGTACGTCCCTACTTCAGTAGACTACCACCATTCTTTGGTGAAGTTGTAAGCTTGAGGACTCTTCCCTACATAGGGGTGGTCGATAACATTAGGCAACACAGGTTGTTGCTTTTGAGATTGGTGGAGCCAAAACGACGTCAAAACGAGTTAGGGATGAGTTGGGATCAAGCCAGGAAGCATCGGGATCGAAGCAGAGATGAAAAATAGGAAAACGGGACGCTGTAGGCTACACCAGCCGAGACGGCAGCGCGGTGACGCTGTCTTGATGGGGAGGGCTGGCGCGCTTTTGCATCCTTAGTGCCATGGCACTGTTTTGAGTTTACAAATAAGTAGTTTCAAGTTTTAGGGGAACGAAGGGTTATTTGAAGCTAATTTTGAGCGGGTTTTGATAGCAAATGAGTGGCAGCGGCTCGGGTATTGACAGAGACATTGGAGTTGATCAAGGTCGATATTATCGAGGTAATTGTATCTTGATTCTTATTAATTTTTCATTCTTGTTCCTAAGTATTAATTGTGTTAAAATACTTAGAAGTTAGGAGATTTTTGCTAGGACCTCTAGGGGGTATTTTTGGGGAGAGTTTATTGTATCAAATCCTTAACTATTATTAGTGACTTACCCACATCTGAGTGGAAGACTGGACGTAACCCTTAGTGGTGAACTAGTATAATTTGTTGTGTCGTTTTCTTGTGCTTTACAGTTTTCTTCCTTATTTGTATGTTGTGGTTGTGTTTGGATATTTTATGTAGAAGGGAAAATTATACAGGACCGTTAATTTCCCAACAAGTGGTATCAAAGCTATAGGGTTGCAGATCATGGGAGACATATATCAAGTACACCATTACTATGAAGGGGTTCTAAAGTTCAGTGGAGAGACTTTCAGTTTTTTGAAGATGCAGGAAAAGGATCTTCTTAAGTGTAAGAAGATACAAAAGACTTTGGGGGAGAGACCAGCAGAGATGACTGATAAGGCTTGGAGTGACATGGATGAGCAGACCATTGCGAATATCAAAATGTCATTATCGATGGGGGTATGCTGTTTGCTGGCGATAGGGACTATAACGAAGGAACTGTTGAAGGCCTTGCAAGACAGGTATAAAAAACCTTCTGCCAATACAAAAATACTTCAATGGACGAAGTATTTTAATATCCACATGGAGGAGGAAACCTTAGTAATTTCCCACATTAATGAGCTGATCGATATCTTGAATAAATTAGAAGGAATGGGTGTCAAGATTGATAAGGAGGCGAAGGCTATGAGGCTGTTGACATCTTTGCCTGCTAGCTGAGAGACGATGAAACCACAATGTCGAATTTGTTAGGTGATAATAGCTTGAAATTTTCAACTATATGTGATGATGCCTTATCTGAGGAAGCCTGGAAAAAATTAGGGGAAATGTATGCATCTACTCCAGGGGCAGAGAACAAGATTGAATCAGCTTTGGTAGTGCAGAACAAGGGGAAGGGCAAGATGAACTGCATGGGGAAGCAGCAGCATAGATATAACGGGGGTAGTGGAAGTTCCAGTGGAGAAGTGGAGTGTTATTACTGCCATAAGAAGGGACACGTTGAACGCTTTTGTAGGAAGTTCAAAAAATATTTTGAGAAGGGGATCAATACTGCAAATGTTGTAACAGAAGAAGATCAGGTTGAAGAGTTTAAAGCTTGTGTTCAGAGGAACATATCTGTAGATCAGTGGATAGTGGACACTACAGCATCAGCGTATGTTGTTTCAAACAAACGTTGCTTTTCATCTTTTACTGCAGGTGATTATGGTTAAGGATGATGGGAAATGAGAGTATCTCCAAGATGAGAGGAATTGGAGATGTTTGTTTGAAGAAAGGCGAAGGGACCGAGTTGGTGCTACGAGGCATCATGTATATTCATAGCTTCAGATTTAATTTGTTATCTACAGGAAAGCTAGACGACGATGGCTTTAGTAGTGAGTTTGTTAGGGGTTACTGA

mRNA sequence

ATGCAAAACATGGAAAACACACTATGTTCGGAAAATGCACCAGGTGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCACTACCGCTTTTGGGTGTTGCAGAGGCTAGGGTAACCTACAATCATATGCTTATGTGTGATTACAATCCTAGAGAATATCTACCAACTCATTTGCATTATAGGTGCTACCGCAAGCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGACGTAGTGGTGGTGTTCGTGGGAAACCGTAGAAGAAAAGTTCTTCAAAGGCATGAACATGCAAAGTGGCGAGGAGCCACTCACCAAAAAAAGTACAAGGAAAAGCATGCGCTTCTTGTCTGCCCAGTTTTTCATGTATTTAGACGTCTTTTTGGGGTACGTCCCTACTTCAGTAGACTACCACCATTCTTTGGTGAAGTTGTAAGCTTGAGGACTCTTCCCTACATAGGGGTGGTCGATAACATTAGGCAACACAGGACCGTTAATTTCCCAACAAGTGGTATCAAAGCTATAGGGTTGCAGATCATGGGAGACATATATCAAGTACACCATTACTATGAAGGGGTTCTAAAGTTCAGTGGAGAGACTTTCAGTTTTTTGAAGATGCAGGAAAAGGATCTTCTTAAGTACCATTGCGAATATCAAAATGTCATTATCGATGGGGGTATGCTGTTTGCTGGCGATAGGGACTATAACGAAGGAACTGTTGAAGGCCTTGCAAGACAGCTGAGAGACGATGAAACCACAATGTCGAATTTGTTAGGTGATAATAGCTTGAAATTTTCAACTATATGTGATGATGCCTTATCTGAGGAAGCCTGGAAAAAATTAGGGGAAATGTATGCATCTACTCCAGGGGCAGAGAACAAGATTGAATCAGCTTTGGTAGTGCAGAACAAGGGGAAGGGCAAGATGAACTGCATGGGGAAGCAGCAGCATAGATATAACGGGGGTAGTGGAAGTTCCAGTGGAGAAGTGGAGTGTTATTACTGCCATAAGAAGGGACACGTTGAACGCTTTTGTAGGAAGTTCAAAAAATATTTTGAGAAGGGGATCAATACTGCAAATGTTGTAACAGAAGAAGATCAGGTTGAAGAGTTTAAAGCTTGTGTTCAGAGGAACATATCTGTAGATCAGTGGATAGTGGACACTACAGCATCAGCGTATGTTGTTTCAAACAAACGTTGCTTTTCATCTTTTACTGCAGGAAAGCTAGACGACGATGGCTTTAGTAGTGAGTTTGTTAGGGGTTACTGA

Coding sequence (CDS)

ATGCAAAACATGGAAAACACACTATGTTCGGAAAATGCACCAGGTGCAATTCCTGACTTTTCTTGGGATTTGAGTTCTACTCTTTCACTACCGCTTTTGGGTGTTGCAGAGGCTAGGGTAACCTACAATCATATGCTTATGTGTGATTACAATCCTAGAGAATATCTACCAACTCATTTGCATTATAGGTGCTACCGCAAGCACGATCCCGAGACCCAAGAGGATAGCGAGGAAGACGTAGTGGTGGTGTTCGTGGGAAACCGTAGAAGAAAAGTTCTTCAAAGGCATGAACATGCAAAGTGGCGAGGAGCCACTCACCAAAAAAAGTACAAGGAAAAGCATGCGCTTCTTGTCTGCCCAGTTTTTCATGTATTTAGACGTCTTTTTGGGGTACGTCCCTACTTCAGTAGACTACCACCATTCTTTGGTGAAGTTGTAAGCTTGAGGACTCTTCCCTACATAGGGGTGGTCGATAACATTAGGCAACACAGGACCGTTAATTTCCCAACAAGTGGTATCAAAGCTATAGGGTTGCAGATCATGGGAGACATATATCAAGTACACCATTACTATGAAGGGGTTCTAAAGTTCAGTGGAGAGACTTTCAGTTTTTTGAAGATGCAGGAAAAGGATCTTCTTAAGTACCATTGCGAATATCAAAATGTCATTATCGATGGGGGTATGCTGTTTGCTGGCGATAGGGACTATAACGAAGGAACTGTTGAAGGCCTTGCAAGACAGCTGAGAGACGATGAAACCACAATGTCGAATTTGTTAGGTGATAATAGCTTGAAATTTTCAACTATATGTGATGATGCCTTATCTGAGGAAGCCTGGAAAAAATTAGGGGAAATGTATGCATCTACTCCAGGGGCAGAGAACAAGATTGAATCAGCTTTGGTAGTGCAGAACAAGGGGAAGGGCAAGATGAACTGCATGGGGAAGCAGCAGCATAGATATAACGGGGGTAGTGGAAGTTCCAGTGGAGAAGTGGAGTGTTATTACTGCCATAAGAAGGGACACGTTGAACGCTTTTGTAGGAAGTTCAAAAAATATTTTGAGAAGGGGATCAATACTGCAAATGTTGTAACAGAAGAAGATCAGGTTGAAGAGTTTAAAGCTTGTGTTCAGAGGAACATATCTGTAGATCAGTGGATAGTGGACACTACAGCATCAGCGTATGTTGTTTCAAACAAACGTTGCTTTTCATCTTTTACTGCAGGAAAGCTAGACGACGATGGCTTTAGTAGTGAGTTTGTTAGGGGTTACTGA

Protein sequence

MQNMENTLCSENAPGAIPDFSWDLSSTLSLPLLGVAEARVTYNHMLMCDYNPREYLPTHLHYRCYRKHDPETQEDSEEDVVVVFVGNRRRKVLQRHEHAKWRGATHQKKYKEKHALLVCPVFHVFRRLFGVRPYFSRLPPFFGEVVSLRTLPYIGVVDNIRQHRTVNFPTSGIKAIGLQIMGDIYQVHHYYEGVLKFSGETFSFLKMQEKDLLKYHCEYQNVIIDGGMLFAGDRDYNEGTVEGLARQLRDDETTMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSGEVECYYCHKKGHVERFCRKFKKYFEKGINTANVVTEEDQVEEFKACVQRNISVDQWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFSSEFVRGY
Homology
[Close]
BLAST of Moc09g14690 vs. NCBI nr
Match: RVW84195.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-08
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = 0 

Query: 254 TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCM 313
           T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+    
Sbjct: 139 TVSNSTPDGVVTMSQVTSSLLNEETRRK---------SSGSSHSEALVIENRGRGRSK-- 198

Query: 314 GKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKFK-------KYFEKGINTANV 373
            K  H  +   G SS     +VECYYCHKKGH++R CRK K       K  EK  N   V
Sbjct: 199 SKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAV 258

Query: 374 VTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFS 421
           VT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    
Sbjct: 259 VTDGELM-----IIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMG 306

[Close]
BLAST of Moc09g14690 vs. NCBI nr
Match: RVW14266.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-08
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = 0 

Query: 254 TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCM 313
           T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+    
Sbjct: 375 TVSNSTPDGVVTMSQVTSSLLNEETRRK---------SSGSSHSEALVIENRGRGRSK-- 434

Query: 314 GKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKFK-------KYFEKGINTANV 373
            K  H  +   G SS     +VECYYCHKKGH++R CRK K       K  EK  N   V
Sbjct: 435 SKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAV 494

Query: 374 VTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFS 421
           VT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    
Sbjct: 495 VTDGELM-----IIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMG 542

[Close]
BLAST of Moc09g14690 vs. NCBI nr
Match: RVW42505.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 72.0 bits (175), Expect = 1.4e-08
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = 0 

Query: 254 TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCM 313
           T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+    
Sbjct: 28  TVSNSTPDGVVTMSQVTSSLLNEETRRK---------SSGSSHSEALVIENRGRGRSK-- 87

Query: 314 GKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKFK-------KYFEKGINTANV 373
            K  H  +   G SS     +VECYYCHKKGH++R CRK K       K  EK  N   V
Sbjct: 88  SKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAV 147

Query: 374 VTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFS 421
           VT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    
Sbjct: 148 VTDGELM-----IIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMG 195

[Close]
BLAST of Moc09g14690 vs. NCBI nr
Match: RVW94144.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 70.1 bits (170), Expect = 5.2e-08
Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = 0 

Query: 254 TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCM 313
           T+SN   D  +  S +    L+EE  +K          + +    ALV++N+ +GK    
Sbjct: 109 TVSNSTPDGVVTMSQVTSSLLNEETRRK---------SSGSSHSEALVIENRERGKSK-- 168

Query: 314 GKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKFK-------KYFEKGINTANV 373
            K  H  +   G SS     +VECYYCHKKGH++R CRK K       K  EK  N   V
Sbjct: 169 SKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAV 228

Query: 374 VTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFS 421
           VT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    
Sbjct: 229 VTDGELM-----IIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMG 276

[Close]
BLAST of Moc09g14690 vs. NCBI nr
Match: KAF2294485.1 (hypothetical protein GH714_011845 [Hevea brasiliensis])

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-07
Identity = 54/204 (26.47%), Postives = 88/204 (43.14%), Query Frame = 0 

Query: 241 VEGLARQLRDDETTMS----NLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKI 300
           V G  +Q  +D  T+     N   +  +    +    ++EE        + S   A +  
Sbjct: 35  VHGFIQQFVEDNETLKVSIINSAPNGVVNMKYVKSSIMNEET------RWRSQNSASSSQ 94

Query: 301 ESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSGEVECYYCHKKGHVERFCRKFKKYFEKG 360
              LV+  +G+ +      +    + G  +    VEC+YC KKGH+++FCRKFKK  ++G
Sbjct: 95  SDILVIDFRGRSESRSFNLRDR--SRGKSNKYANVECHYCKKKGHIQKFCRKFKK--DQG 154

Query: 361 INTANVVTEEDQ--------VEEFKACVQRNI-----SVDQWIVDTTASAYVVSNKRCFS 420
            N    V +ED         V+EF      +I         W++D+ A+ YV S K  FS
Sbjct: 155 KNKGKEVRKEDSSDDECFNVVDEFNMVYNDDIINLTTHKTSWVIDSGATIYVTSRKELFS 214

Query: 421 SFTAG-----KLDDDGFSSEFVRG 423
            +T G     K+ +D  S    +G
Sbjct: 215 FYTHGDFGSIKMGNDNLSKVVGKG 228

[Close]
BLAST of Moc09g14690 vs. ExPASy TrEMBL
Match: A0A438BTH6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4171 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-09
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = 0 

Query: 254 TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCM 313
           T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+    
Sbjct: 375 TVSNSTPDGVVTMSQVTSSLLNEETRRK---------SSGSSHSEALVIENRGRGRSK-- 434

Query: 314 GKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKFK-------KYFEKGINTANV 373
            K  H  +   G SS     +VECYYCHKKGH++R CRK K       K  EK  N   V
Sbjct: 435 SKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAV 494

Query: 374 VTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFS 421
           VT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    
Sbjct: 495 VTDGELM-----IIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMG 542

[Close]
BLAST of Moc09g14690 vs. ExPASy TrEMBL
Match: A0A438HI91 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1199 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-09
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = 0 

Query: 254 TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCM 313
           T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+    
Sbjct: 139 TVSNSTPDGVVTMSQVTSSLLNEETRRK---------SSGSSHSEALVIENRGRGRSK-- 198

Query: 314 GKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKFK-------KYFEKGINTANV 373
            K  H  +   G SS     +VECYYCHKKGH++R CRK K       K  EK  N   V
Sbjct: 199 SKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAV 258

Query: 374 VTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFS 421
           VT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    
Sbjct: 259 VTDGELM-----IIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMG 306

[Close]
BLAST of Moc09g14690 vs. ExPASy TrEMBL
Match: A0A438E432 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_810 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-09
Identity = 56/184 (30.43%), Postives = 89/184 (48.37%), Query Frame = 0 

Query: 254 TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCM 313
           T+SN   D  +  S +    L+EE  +K          + +    ALV++N+G+G+    
Sbjct: 28  TVSNSTPDGVVTMSQVTSSLLNEETRRK---------SSGSSHSEALVIENRGRGRSK-- 87

Query: 314 GKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKFK-------KYFEKGINTANV 373
            K  H  +   G SS     +VECYYCHKKGH++R CRK K       K  EK  N   V
Sbjct: 88  SKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAV 147

Query: 374 VTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFS 421
           VT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    
Sbjct: 148 VTDGELM-----IIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMG 195

[Close]
BLAST of Moc09g14690 vs. ExPASy TrEMBL
Match: A0A438IBT7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_788 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-08
Identity = 56/184 (30.43%), Postives = 88/184 (47.83%), Query Frame = 0 

Query: 254 TMSNLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKIESALVVQNKGKGKMNCM 313
           T+SN   D  +  S +    L+EE  +K          + +    ALV++N+ +GK    
Sbjct: 109 TVSNSTPDGVVTMSQVTSSLLNEETRRK---------SSGSSHSEALVIENRERGKSK-- 168

Query: 314 GKQQHRYNGGSGSSSG----EVECYYCHKKGHVERFCRKFK-------KYFEKGINTANV 373
            K  H  +   G SS     +VECYYCHKKGH++R CRK K       K  EK  N   V
Sbjct: 169 SKASHNRDKSRGRSSSISKKDVECYYCHKKGHMKRECRKLKFKEQNKEKNSEKKQNDTAV 228

Query: 374 VTEEDQVEEFKACVQRNISVD------QWIVDTTASAYVVSNKRCFSSFTAGKLDDDGFS 421
           VT+ + +      ++ ++SV+       W++D+ AS +V S    F+S++ G   +    
Sbjct: 229 VTDGELM-----IIRDDVSVNLIGQETDWVIDSGASFHVTSRADFFTSYSQGDFGNVRMG 276

[Close]
BLAST of Moc09g14690 vs. ExPASy TrEMBL
Match: A0A6A6L287 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_011845 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.3e-07
Identity = 54/204 (26.47%), Postives = 88/204 (43.14%), Query Frame = 0 

Query: 241 VEGLARQLRDDETTMS----NLLGDNSLKFSTICDDALSEEAWKKLGEMYASTPGAENKI 300
           V G  +Q  +D  T+     N   +  +    +    ++EE        + S   A +  
Sbjct: 35  VHGFIQQFVEDNETLKVSIINSAPNGVVNMKYVKSSIMNEET------RWRSQNSASSSQ 94

Query: 301 ESALVVQNKGKGKMNCMGKQQHRYNGGSGSSSGEVECYYCHKKGHVERFCRKFKKYFEKG 360
              LV+  +G+ +      +    + G  +    VEC+YC KKGH+++FCRKFKK  ++G
Sbjct: 95  SDILVIDFRGRSESRSFNLRDR--SRGKSNKYANVECHYCKKKGHIQKFCRKFKK--DQG 154

Query: 361 INTANVVTEEDQ--------VEEFKACVQRNI-----SVDQWIVDTTASAYVVSNKRCFS 420
            N    V +ED         V+EF      +I         W++D+ A+ YV S K  FS
Sbjct: 155 KNKGKEVRKEDSSDDECFNVVDEFNMVYNDDIINLTTHKTSWVIDSGATIYVTSRKELFS 214

Query: 421 SFTAG-----KLDDDGFSSEFVRG 423
            +T G     K+ +D  S    +G
Sbjct: 215 FYTHGDFGSIKMGNDNLSKVVGKG 228

The following BLAST results are available for this feature:
BLAST of Moc09g14690 vs. NCBI nr
Match NameE-valueIdentityDescription
RVW84195.11.4e-0830.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW14266.11.4e-0830.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW42505.11.4e-0830.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW94144.15.2e-0830.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
KAF2294485.12.6e-0726.47hypothetical protein GH714_011845 [Hevea brasiliensis][more]
BLAST of Moc09g14690 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g14690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A438BTH66.7e-0930.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438HI916.7e-0930.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438E4326.7e-0930.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438IBT72.5e-0830.43Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A6A6L2871.3e-0726.47Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_011845 PE=4 SV=1[more]
BLAST of Moc09g14690 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 333..348
score: 8.548371
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 312..355

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g14690.1Moc09g14690.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding