Moc09g13080 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g13080
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionTy1-copia retrotransposon protein
Locationchr9: 11092065 .. 11092546 (-)
RNA-Seq ExpressionMoc09g13080
SyntenyMoc09g13080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAATAAGATCCAGCAAGGTGCTTCCAGATCTGTCCAAACTTGAAACATTAGATGGATCGAATTACCGATGCTGGTCTCAGAAGCTGCTCATCTTCTTCGAGCAATTAGAGGTAGACTACGTCACCACGCCCGCCGCTGTTGCCACCGGAGTTGCAGGAGCCGTTGCCACCACCGCTGCCACCGCCACCGTCGATAAGTTCAAGAAGGATACAAGACTGTCTGCGGGCATCTCCTCAACCATACGTATGACTCGTTATTTGATCTCTTCATTGCCTAAAAATTTGTGAAGGTTATTTGGGACACTCGGGAGTCAAGATATGGTGGAGATGATGCTGGGAGAAAGAAATATGTGGTTGGCAAATGACTGCAGTTTCAAATGGCGGATGATAAACCAGTCATGGATCAAGTTCACGAGTATGAGAACTTAGTGGCTAATGTTCTATCTGAGGGCATCAAGATGTGTGAAATCCTATAG

mRNA sequence

ATGGCTTCAATAAGATCCAGCAAGGTGCTTCCAGATCTGTCCAAACTTGAAACATTAGATGGATCGAATTACCGATGCTGGTCTCAGAAGCTGCTCATCTTCTTCGAGCAATTAGAGGTAGACTACGTCACCACGCCCGCCGCTGTTGCCACCGGAGTTGCAGGAGCCGTTGCCACCACCGCTGCCACCGCCACCGTCGATAAGTTCAAGAAGGATACAAGACTGTCTGCGGGCATCTCCTCAACCATACTCATGGATCAAGTTCACGAGTATGAGAACTTAGTGGCTAATGTTCTATCTGAGGGCATCAAGATGTGTGAAATCCTATAG

Coding sequence (CDS)

ATGGCTTCAATAAGATCCAGCAAGGTGCTTCCAGATCTGTCCAAACTTGAAACATTAGATGGATCGAATTACCGATGCTGGTCTCAGAAGCTGCTCATCTTCTTCGAGCAATTAGAGGTAGACTACGTCACCACGCCCGCCGCTGTTGCCACCGGAGTTGCAGGAGCCGTTGCCACCACCGCTGCCACCGCCACCGTCGATAAGTTCAAGAAGGATACAAGACTGTCTGCGGGCATCTCCTCAACCATACTCATGGATCAAGTTCACGAGTATGAGAACTTAGTGGCTAATGTTCTATCTGAGGGCATCAAGATGTGTGAAATCCTATAG

Protein sequence

MASIRSSKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTTPAAVATGVAGAVATTAATATVDKFKKDTRLSAGISSTILMDQVHEYENLVANVLSEGIKMCEIL
Homology
[Close]
BLAST of Moc09g13080 vs. NCBI nr
Match: XP_022150382.1 (uncharacterized protein LOC111018559 [Momordica charantia])

HSP 1 Score: 111.3 bits (277), Expect = 5.3e-21
Identity = 84/187 (44.92%), Postives = 90/187 (48.13%), Query Frame = 0 

Query: 1   MASIRSSKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTTPA---------AVAT 60
           MAS+RS KVLPD SKLE+LDGSNY  WSQKL IFFEQLEVDYV T A         AVA 
Sbjct: 1   MASVRSGKVLPDRSKLESLDGSNYHRWSQKLFIFFEQLEVDYVLTTAAADVAAVAEAVAG 60

Query: 61  GVAGAVA------------------TTAATATVDKFKKD--------------------- 110
            VAGAVA                  TT A A  DKFKKD                     
Sbjct: 61  NVAGAVAGTVAGAARAVAGAVTGATTTTAVAAADKFKKDNKTIHEHLLNHMNNSLFDFFV 120

[Close]
BLAST of Moc09g13080 vs. NCBI nr
Match: KAA0038001.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 1.6e-17
Identity = 59/114 (51.75%), Postives = 72/114 (63.16%), Query Frame = 0 

Query: 7   SKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTTPAAVATGVAGAVATTAATATV 66
           S + PDLSKLE LDG+NYR WSQKLLI FEQLEVDYV T    ++      +T++     
Sbjct: 14  STLFPDLSKLEPLDGTNYRRWSQKLLILFEQLEVDYVLTTDLPSSDPPATTSTSS----- 73

Query: 67  DKFKKDTRLSAGISSTI-----------LMDQVHEYENLVANVLSEGIKMCEIL 110
                D   S G S+TI           +++Q+HEYENLVANVLSEG+KMCEIL
Sbjct: 74  -----DLESSTGPSTTIVVADQMTDDKPIVEQIHEYENLVANVLSEGMKMCEIL 117

[Close]
BLAST of Moc09g13080 vs. NCBI nr
Match: XP_022158735.1 (uncharacterized protein LOC111025197 [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 2.1e-17
Identity = 79/193 (40.93%), Postives = 87/193 (45.08%), Query Frame = 0 

Query: 1   MASIRSSKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTT---PAAVATG--VAG 60
           MA+IRS KVL DLSKLE LDGSNYR WSQKLLIFFEQLE+DY+ T   PAAV T      
Sbjct: 1   MAAIRSGKVLSDLSKLEPLDGSNYRQWSQKLLIFFEQLEIDYIITAAQPAAVTTAATTTA 60

Query: 61  AVATTAATAT----------------------------VDKFKKDTRLSAG--------- 110
           A A TA T T                             DKF+KD +   G         
Sbjct: 61  AAAVTAXTVTAXVTDPPAXAAATVSVXAAVPXTSTXIEADKFEKDNKTVRGHLLNHMNDS 120

[Close]
BLAST of Moc09g13080 vs. NCBI nr
Match: KAA0061124.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK03795.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.7e-17
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 0 

Query: 6   SSKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTTPAAVATGVAGAVATTAATAT 65
           S+K+LPDLSKLE LD +NYR WS+KLLIFFEQLEVDYV T    ++        T +T++
Sbjct: 6   SNKILPDLSKLEPLDETNYRRWSKKLLIFFEQLEVDYVLTTDLPSSD----PPATTSTSS 65

Query: 66  VDKFKKDTRLSAGISSTILMD-----QVHEYENLVANVLSEGIKMCEIL 110
             K       +A ++  +  D     Q+HEYENLVANVLSEG+KMCEIL
Sbjct: 66  DPKSSTGPPATAAVAGQMTNDKPFFEQIHEYENLVANVLSEGMKMCEIL 110

[Close]
BLAST of Moc09g13080 vs. NCBI nr
Match: KAA0043125.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK23910.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.9e-16
Identity = 66/149 (44.30%), Postives = 84/149 (56.38%), Query Frame = 0 

Query: 6   SSKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTT-------PAAVATGVAGAVA 65
           S+K+ PDLSKLE LDG+NY  WSQ LLIFFEQLEVDYV T       P+A  +  +   +
Sbjct: 6   SNKIPPDLSKLEPLDGTNYHRWSQNLLIFFEQLEVDYVLTTDLPSSDPSATTSTSSDPES 65

Query: 66  TT--AATATV------------DKFKKDTRLS----------AGISSTI----------- 110
           +T  +ATAT+            +K+ KD + S          AG    +           
Sbjct: 66  STGPSATATIADQVKNDQVIDLEKYAKDNKTSTLESRYGGDDAGRKKYVVGKCLQFQMTD 125

[Close]
BLAST of Moc09g13080 vs. ExPASy TrEMBL
Match: A0A6J1DAK7 (uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018559 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.6e-21
Identity = 84/187 (44.92%), Postives = 90/187 (48.13%), Query Frame = 0 

Query: 1   MASIRSSKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTTPA---------AVAT 60
           MAS+RS KVLPD SKLE+LDGSNY  WSQKL IFFEQLEVDYV T A         AVA 
Sbjct: 1   MASVRSGKVLPDRSKLESLDGSNYHRWSQKLFIFFEQLEVDYVLTTAAADVAAVAEAVAG 60

Query: 61  GVAGAVA------------------TTAATATVDKFKKD--------------------- 110
            VAGAVA                  TT A A  DKFKKD                     
Sbjct: 61  NVAGAVAGTVAGAARAVAGAVTGATTTTAVAAADKFKKDNKTIHEHLLNHMNNSLFDFFV 120

[Close]
BLAST of Moc09g13080 vs. ExPASy TrEMBL
Match: A0A5A7T8N6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001890 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.7e-18
Identity = 59/114 (51.75%), Postives = 72/114 (63.16%), Query Frame = 0 

Query: 7   SKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTTPAAVATGVAGAVATTAATATV 66
           S + PDLSKLE LDG+NYR WSQKLLI FEQLEVDYV T    ++      +T++     
Sbjct: 14  STLFPDLSKLEPLDGTNYRRWSQKLLILFEQLEVDYVLTTDLPSSDPPATTSTSS----- 73

Query: 67  DKFKKDTRLSAGISSTI-----------LMDQVHEYENLVANVLSEGIKMCEIL 110
                D   S G S+TI           +++Q+HEYENLVANVLSEG+KMCEIL
Sbjct: 74  -----DLESSTGPSTTIVVADQMTDDKPIVEQIHEYENLVANVLSEGMKMCEIL 117

[Close]
BLAST of Moc09g13080 vs. ExPASy TrEMBL
Match: A0A6J1DWN1 (uncharacterized protein LOC111025197 OS=Momordica charantia OX=3673 GN=LOC111025197 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.0e-17
Identity = 79/193 (40.93%), Postives = 87/193 (45.08%), Query Frame = 0 

Query: 1   MASIRSSKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTT---PAAVATG--VAG 60
           MA+IRS KVL DLSKLE LDGSNYR WSQKLLIFFEQLE+DY+ T   PAAV T      
Sbjct: 1   MAAIRSGKVLSDLSKLEPLDGSNYRQWSQKLLIFFEQLEIDYIITAAQPAAVTTAATTTA 60

Query: 61  AVATTAATAT----------------------------VDKFKKDTRLSAG--------- 110
           A A TA T T                             DKF+KD +   G         
Sbjct: 61  AAAVTAXTVTAXVTDPPAXAAATVSVXAAVPXTSTXIEADKFEKDNKTVRGHLLNHMNDS 120

[Close]
BLAST of Moc09g13080 vs. ExPASy TrEMBL
Match: A0A5A7V1B9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001830 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 58/109 (53.21%), Postives = 73/109 (66.97%), Query Frame = 0 

Query: 6   SSKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTTPAAVATGVAGAVATTAATAT 65
           S+K+LPDLSKLE LD +NYR WS+KLLIFFEQLEVDYV T    ++        T +T++
Sbjct: 6   SNKILPDLSKLEPLDETNYRRWSKKLLIFFEQLEVDYVLTTDLPSSD----PPATTSTSS 65

Query: 66  VDKFKKDTRLSAGISSTILMD-----QVHEYENLVANVLSEGIKMCEIL 110
             K       +A ++  +  D     Q+HEYENLVANVLSEG+KMCEIL
Sbjct: 66  DPKSSTGPPATAAVAGQMTNDKPFFEQIHEYENLVANVLSEGMKMCEIL 110

[Close]
BLAST of Moc09g13080 vs. ExPASy TrEMBL
Match: A0A5A7TNY1 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold592G00080 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 66/149 (44.30%), Postives = 84/149 (56.38%), Query Frame = 0 

Query: 6   SSKVLPDLSKLETLDGSNYRCWSQKLLIFFEQLEVDYVTT-------PAAVATGVAGAVA 65
           S+K+ PDLSKLE LDG+NY  WSQ LLIFFEQLEVDYV T       P+A  +  +   +
Sbjct: 6   SNKIPPDLSKLEPLDGTNYHRWSQNLLIFFEQLEVDYVLTTDLPSSDPSATTSTSSDPES 65

Query: 66  TT--AATATV------------DKFKKDTRLS----------AGISSTI----------- 110
           +T  +ATAT+            +K+ KD + S          AG    +           
Sbjct: 66  STGPSATATIADQVKNDQVIDLEKYAKDNKTSTLESRYGGDDAGRKKYVVGKCLQFQMTD 125

The following BLAST results are available for this feature:
BLAST of Moc09g13080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150382.15.3e-2144.92uncharacterized protein LOC111018559 [Momordica charantia][more]
KAA0038001.11.6e-1751.75ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
XP_022158735.12.1e-1740.93uncharacterized protein LOC111025197 [Momordica charantia][more]
KAA0061124.12.7e-1753.21ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK03795.1 ty1-cop... [more]
KAA0043125.13.9e-1644.30ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK23910.1 ty1-cop... [more]
BLAST of Moc09g13080 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g13080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DAK72.6e-2144.92uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A5A7T8N67.7e-1851.75Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A6J1DWN11.0e-1740.93uncharacterized protein LOC111025197 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A5A7V1B91.3e-1753.21Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7TNY11.9e-1644.30Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
BLAST of Moc09g13080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g13080.1Moc09g13080.1mRNA