Moc09g12270 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g12270
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr9: 10366119 .. 10366753 (-)
RNA-Seq ExpressionMoc09g12270
SyntenyMoc09g12270
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTGCATCCCGGTCGATTTTCACTCTCGTACCTTTTTTGTAGAAATGTCAAGACGAGCCACTTCCTTGTTCGAGAGGGAGCGCCGACGAAATGTTCGGAGCTCGGGAGCCAGATCCACTCGGGCTTCAAACGTCGAGTGACTGATTTAACCGAAGATGACCTCTCATCTCAGCATCAGGCTCTGCCTTCGATGCCTCCTGCCGTAACTCGTTGTTCTACTCGGCTTCAAGGGACATCCAGTCCATCTTCCTTTTGCGGTCACCCAGGGTCTTCCTTCCAGGCGTCGATTTTTCCTTTCTCTGGCCCATATGATGCAGATGCCGACGGGGCAACTTATCTGGAGAGGGCATTTAGCCTTTGGCAGGGACTTGGGGAATCGTCGAGTGGGTCGAACTTTGGCTATTCGAACCCCCAACACAACATTAATACCCGCCTTAGAGATCTCCACCAGGTCGGCTCTTGCAGTTACCTTTAGGTATCTGTCGCTGCACATAGTCTAATGTTTGTCTTTGGCTTTGGCAGATTTTTAATCGCTTGGTCGTGTTCTCAGGTAGGGTTGCTGATGAAATTAACCATCTCCTTCGCCACATGCCCCTCGGGATGAGTTGGACCGAGCTCTTGCTTCTTTGA

mRNA sequence

ATGAATTTGCATCCCGGTCGATTTTCACTCTCGTACCTTTTTTGTAGAAATGTCAAGACGAGCCACTTCCTTGTTCGAGAGGGAGCGCCGACGAAATGTTCGGAGCTCGGGAGCCAGATCCACTCGGGCTTCAAACGTCGAGTGACTGATTTAACCGAAGATGACCTCTCATCTCAGCATCAGGCTCTGCCTTCGATGCCTCCTGCCGTAACTCGTTGTTCTACTCGGCTTCAAGGGACATCCAGTCCATCTTCCTTTTGCGGTCACCCAGGGTCTTCCTTCCAGGCGTCGATTTTTCCTTTCTCTGGCCCATATGATGCAGATGCCGACGGGGCAACTTATCTGGAGAGGGCATTTAGCCTTTGGCAGGGACTTGGGGAATCGTCGAGTGGGTCGAACTTTGGCTATTCGAACCCCCAACACAACATTAATACCCGCCTTAGAGATCTCCACCAGATTTTTAATCGCTTGGTCGTGTTCTCAGGTAGGGTTGCTGATGAAATTAACCATCTCCTTCGCCACATGCCCCTCGGGATGAGTTGGACCGAGCTCTTGCTTCTTTGA

Coding sequence (CDS)

ATGAATTTGCATCCCGGTCGATTTTCACTCTCGTACCTTTTTTGTAGAAATGTCAAGACGAGCCACTTCCTTGTTCGAGAGGGAGCGCCGACGAAATGTTCGGAGCTCGGGAGCCAGATCCACTCGGGCTTCAAACGTCGAGTGACTGATTTAACCGAAGATGACCTCTCATCTCAGCATCAGGCTCTGCCTTCGATGCCTCCTGCCGTAACTCGTTGTTCTACTCGGCTTCAAGGGACATCCAGTCCATCTTCCTTTTGCGGTCACCCAGGGTCTTCCTTCCAGGCGTCGATTTTTCCTTTCTCTGGCCCATATGATGCAGATGCCGACGGGGCAACTTATCTGGAGAGGGCATTTAGCCTTTGGCAGGGACTTGGGGAATCGTCGAGTGGGTCGAACTTTGGCTATTCGAACCCCCAACACAACATTAATACCCGCCTTAGAGATCTCCACCAGATTTTTAATCGCTTGGTCGTGTTCTCAGGTAGGGTTGCTGATGAAATTAACCATCTCCTTCGCCACATGCCCCTCGGGATGAGTTGGACCGAGCTCTTGCTTCTTTGA

Protein sequence

MNLHPGRFSLSYLFCRNVKTSHFLVREGAPTKCSELGSQIHSGFKRRVTDLTEDDLSSQHQALPSMPPAVTRCSTRLQGTSSPSSFCGHPGSSFQASIFPFSGPYDADADGATYLERAFSLWQGLGESSSGSNFGYSNPQHNINTRLRDLHQIFNRLVVFSGRVADEINHLLRHMPLGMSWTELLLL
Homology
[Close]
BLAST of Moc09g12270 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 76.3 bits (186), Expect = 3.2e-10
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 0 

Query: 123  QGLGESSSGSNFGYSNPQHNINTRLRDLHQIFNRLVVFSGRVADEINHLLRH 175
            +GL +SSS S+FG SNP H+I+T L DLHQIFNRLVVFSG VADEINHL  H
Sbjct: 1085 EGLDDSSSWSDFGLSNPHHSISTWLSDLHQIFNRLVVFSGWVADEINHLRCH 1136

[Close]
BLAST of Moc09g12270 vs. NCBI nr
Match: XP_022147193.1 (uncharacterized protein LOC111016203 [Momordica charantia])

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-09
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 125 LGESSSGSNFGYSNPQHNINTRLRDLHQIFNRLVVFSGRVADEINHLLRH 175
           +GESS GS+FGYSN Q +I+T L DLHQ+FN  VVFSGRV DEINHL  H
Sbjct: 73  IGESSGGSSFGYSNLQQSIHTCLSDLHQVFNPSVVFSGRVTDEINHLRSH 122

[Close]
BLAST of Moc09g12270 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.6e-10
Identity = 38/52 (73.08%), Postives = 43/52 (82.69%), Query Frame = 0 

Query: 123  QGLGESSSGSNFGYSNPQHNINTRLRDLHQIFNRLVVFSGRVADEINHLLRH 175
            +GL +SSS S+FG SNP H+I+T L DLHQIFNRLVVFSG VADEINHL  H
Sbjct: 1085 EGLDDSSSWSDFGLSNPHHSISTWLSDLHQIFNRLVVFSGWVADEINHLRCH 1136

[Close]
BLAST of Moc09g12270 vs. ExPASy TrEMBL
Match: A0A6J1D0L6 (uncharacterized protein LOC111016203 OS=Momordica charantia OX=3673 GN=LOC111016203 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 1.3e-09
Identity = 35/50 (70.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 125 LGESSSGSNFGYSNPQHNINTRLRDLHQIFNRLVVFSGRVADEINHLLRH 175
           +GESS GS+FGYSN Q +I+T L DLHQ+FN  VVFSGRV DEINHL  H
Sbjct: 73  IGESSGGSSFGYSNLQQSIHTCLSDLHQVFNPSVVFSGRVTDEINHLRSH 122

The following BLAST results are available for this feature:
BLAST of Moc09g12270 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156747.13.2e-1073.08uncharacterized protein LOC111023586 [Momordica charantia][more]
XP_022147193.12.7e-0970.00uncharacterized protein LOC111016203 [Momordica charantia][more]
BLAST of Moc09g12270 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g12270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DSS11.6e-1073.08uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1D0L61.3e-0970.00uncharacterized protein LOC111016203 OS=Momordica charantia OX=3673 GN=LOC111016... [more]
BLAST of Moc09g12270 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g12270.1Moc09g12270.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding