Moc09g10570 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g10570
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transposon TX1 uncharacterized 149 kDa protein
Location	chr9: 8978470 .. 8979040 (-)
RNA-Seq Expression	Moc09g10570
Synteny	Moc09g10570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAACAAAGAGTGGTGCATGTTGCAAGTTCCTTTAGTTGTAAAGCTGAACGCCTTCTGATACTATATTTGAGCTTGCCATTAGGAGGGAATCCTAAACTTGATGCCTTTCGGAGTCCAATACAAGAAAGAATCTCCAAGAAGCTCGGCATATGGATGAGGTATCATTTATAGAGGGATGGAAGGTTGACATTATGTCGATCTGTTCTTGGGAGTATTCCTATTTATTATTTCTCTGTTTTTCATTCTGGTGAGAATTGGCAAACAAATTGAGCGTTTTATGCATTCTTTCTTGTGAGGAGATTCTTCAAAAGGGTCGATGAGATACCTAGTTCGTTGGAATATTGCTTCTCTACCTAGGGAAGCCGGCGGTTTGGGTATTGATTGTGTCCTTAAGCGCAACAAATGCCTTTTATCCAAATGGGGCTGGCGGTTTAGTGTGGAGATTTCGACTTTATGGCATATGGTGGTGGCCAGTTTATATGGTTATGATCATTTTGGCTGGAACGCGGTGCCTAAGATTCATGGCTCGAGTCGTATTCCTTGGAACAATATTAACGAGCAATGA

mRNA sequence

ATGGATGAACAAAGAGTGGTGCATGTTGCAAGTTCCTTTAGTTGTAAAGCTGAACGCCTTCTGATACTATATTTGAGCTTGCCATTAGGAGGGAATCCTAAACTTGATGCCTTTCGGAGTCCAATACAAGAAAGAATCTCCAAGAAGCTCGGCATATGGATGAGGGAAGCCGGCGGTTTGGGTATTGATTGTGTCCTTAAGCGCAACAAATGCCTTTTATCCAAATGGGGCTGGCGGTTTAGTGTGGAGATTTCGACTTTATGGCATATGGTGGTGGCCAGTTTATATGGTTATGATCATTTTGGCTGGAACGCGGTGCCTAAGATTCATGGCTCGAGTCGTATTCCTTGGAACAATATTAACGAGCAATGA

Coding sequence (CDS)

ATGGATGAACAAAGAGTGGTGCATGTTGCAAGTTCCTTTAGTTGTAAAGCTGAACGCCTTCTGATACTATATTTGAGCTTGCCATTAGGAGGGAATCCTAAACTTGATGCCTTTCGGAGTCCAATACAAGAAAGAATCTCCAAGAAGCTCGGCATATGGATGAGGGAAGCCGGCGGTTTGGGTATTGATTGTGTCCTTAAGCGCAACAAATGCCTTTTATCCAAATGGGGCTGGCGGTTTAGTGTGGAGATTTCGACTTTATGGCATATGGTGGTGGCCAGTTTATATGGTTATGATCATTTTGGCTGGAACGCGGTGCCTAAGATTCATGGCTCGAGTCGTATTCCTTGGAACAATATTAACGAGCAATGA

Protein sequence

MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISKKLGIWMREAGGLGIDCVLKRNKCLLSKWGWRFSVEISTLWHMVVASLYGYDHFGWNAVPKIHGSSRIPWNNINEQ

Homology

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BLAST of Moc09g10570 vs. NCBI nr
Match: RVX22996.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-18
Identity = 55/132 (41.67%), Postives = 69/132 (52.27%), Query Frame = 0


Query: 1   MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISK-------KLGIW 60
           +D+  +  +A    CKA   LILYL LPLGGNPK   F  P+ ERIS+        L  W
Sbjct: 106 LDQAHLSRLAVMLDCKASGWLILYLGLPLGGNPKACGFWDPVIERISRVGEGKRDHLVRW 165

Query: 61  -----MREAGGLGIDCVLKRNKCLLSKWGWRFSVEISTLWHMVVASLYGYDHFGWNAVPK 120
                 +  GGLG+  +  RN  LL KW WR+  E S LWH V+ S+YG    GW+A   
Sbjct: 166 DVVCKPKTIGGLGLGNISWRNLALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTL 225

[Close]

BLAST of Moc09g10570 vs. NCBI nr
Match: CAN83561.1 (hypothetical protein VITISV_024106 [Vitis vinifera])

HSP 1 Score: 102.1 bits (253), Expect = 3.6e-18
Identity = 52/120 (43.33%), Postives = 65/120 (54.17%), Query Frame = 0


Query: 1    MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISKKLGIWMREAGGL 60
            +D+  +  +A    CKA    ILYL LPLGGNPK   F  P+ ERISK      +  GGL
Sbjct: 1333 LDQAHLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISKP-----KTIGGL 1392

Query: 61   GIDCVLKRNKCLLSKWGWRFSVEISTLWHMVVASLYGYDHFGWNAVPKIHGSSRIPWNNI 120
            G+  +  RN  LL KW WR+  E S LWH V+ S+YG    GW+A   +  S R  W  I
Sbjct: 1393 GLGNISWRNLALLGKWLWRYPREGSXLWHQVILSIYGSHSNGWDANTVVRWSXRCXWKAI 1447

[Close]

BLAST of Moc09g10570 vs. NCBI nr
Match: RVW51280.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 54/132 (40.91%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 1   MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISK-------KLGIW 60
           +D+  +  +A    CKA    ILYL LPLGGNPK   F  P+ ERIS+        L  W
Sbjct: 609 LDQAHLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISRVGEGKRDHLVRW 668

Query: 61  -----MREAGGLGIDCVLKRNKCLLSKWGWRFSVEISTLWHMVVASLYGYDHFGWNAVPK 120
                 +  GGLG+  +  RN  LL KW WR+  E S LWH V+ S+YG    GW+A   
Sbjct: 669 DVVCKPKTIGGLGLGNISWRNLALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTL 728

[Close]

BLAST of Moc09g10570 vs. NCBI nr
Match: RVW90395.1 (hypothetical protein CK203_045762 [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 54/132 (40.91%), Postives = 68/132 (51.52%), Query Frame = 0


Query: 1   MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISK-------KLGIW 60
           +D+  +  +A    CKA    ILYL LPLGGNPK   F  P+ ERIS+        L  W
Sbjct: 478 LDQAHLSRLAEMLDCKASGWPILYLGLPLGGNPKACGFWDPVVERISRVGEGKRDHLVRW 537

Query: 61  -----MREAGGLGIDCVLKRNKCLLSKWGWRFSVEISTLWHMVVASLYGYDHFGWNAVPK 120
                 +  GGLG+  +  RN  LL KW WR+  E S LWH V+ S+YG    GW+A   
Sbjct: 538 DVVCKPKTIGGLGLGNISWRNLALLGKWLWRYPREGSALWHQVILSIYGSHSNGWDANTL 597

[Close]

BLAST of Moc09g10570 vs. NCBI nr
Match: RVW75038.1 (LINE-1 retrotransposable element ORF2 protein [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.0e-17
Identity = 52/146 (35.62%), Postives = 67/146 (45.89%), Query Frame = 0


Query: 1   MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISKKLGIWM------ 60
           +++  +  +A    CKA    ILYL LPLGGNPK   F  P+ ERIS++L  W       
Sbjct: 345 LEQNHLSRLAEMLDCKASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQKAYLSF 404

Query: 61  --------------------REAGGLGIDCVLKRNKCLLSKWGWRFSVEISTLWHMVVAS 120
                               +  GGLG   +  RN  LL KW WR+  E S LWH V+ S
Sbjct: 405 GGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILS 464

[Close]

BLAST of Moc09g10570 vs. ExPASy TrEMBL
Match: A0A438HTK2 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_18 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.1e-18
Identity = 54/153 (35.29%), Postives = 72/153 (47.06%), Query Frame = 0


Query: 1   MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISKKLGI-------- 60
           +D   +  +A +  CKA    ILYL LPLGGNP+   F  P+ ERIS++L +        
Sbjct: 475 LDHAHISRLAETLGCKASGWPILYLGLPLGGNPRAGGFWDPVIERISRRLDVAAKIERLQ 534

Query: 61  ----WM-------------------REAGGLGIDCVLKRNKCLLSKWGWRFSVEISTLWH 120
               W                    +E GGLG   +  RN  LL KW WR+  E S LWH
Sbjct: 535 RDFLWSGIGEGKKDHLVRWDVVCKPKEIGGLGFGNISLRNLALLGKWLWRYPREGSALWH 594

Query: 121 MVVASLYGYDHFGWNAVPKIHGSSRIPWNNINE 123
            V+ S+YG    GW+A   +  S R PW  I++
Sbjct: 595 QVILSIYGSHSNGWDANTIVRWSHRCPWKAISQ 627

[Close]

BLAST of Moc09g10570 vs. ExPASy TrEMBL
Match: A0A438GS85 (LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF2_206 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 5.1e-18
Identity = 52/146 (35.62%), Postives = 67/146 (45.89%), Query Frame = 0


Query: 1   MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISKKLGIWM------ 60
           +++  +  +A    CKA    ILYL LPLGGNPK   F  P+ ERIS++L  W       
Sbjct: 345 LEQNHLSRLAEMLDCKASGWPILYLGLPLGGNPKASGFWDPVIERISRRLDGWQKAYLSF 404

Query: 61  --------------------REAGGLGIDCVLKRNKCLLSKWGWRFSVEISTLWHMVVAS 120
                               +  GGLG   +  RN  LL KW WR+  E S LWH V+ S
Sbjct: 405 GGVGEGKRDHLVNWDVVCKPKSRGGLGFGKISMRNVALLGKWLWRYPREGSALWHQVILS 464

[Close]

BLAST of Moc09g10570 vs. ExPASy TrEMBL
Match: A0A438HBI4 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_86 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-17
Identity = 54/160 (33.75%), Postives = 71/160 (44.38%), Query Frame = 0


Query: 1   MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISKKLGIWM------ 60
           +D+  +  +A +  CKA    ILYL LPLGGNP++  F  P+ ERIS++L  W       
Sbjct: 469 LDQAHISRLAETLECKAFGWPILYLGLPLGGNPRVGGFWDPVIERISRRLDGWQKTYLSF 528

Query: 61  ----------------------------------REAGGLGIDCVLKRNKCLLSKWGWRF 120
                                             +E GGLG   +  RN  LL KW WR+
Sbjct: 529 RGRITLIQSCLTHMPWIGEGKRDHLVRWDVVCKPKEIGGLGFGNISLRNLTLLGKWLWRY 588

[Close]

BLAST of Moc09g10570 vs. ExPASy TrEMBL
Match: A0A438KJ67 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_76 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 5.6e-17
Identity = 51/140 (36.43%), Postives = 67/140 (47.86%), Query Frame = 0


Query: 1   MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISKKLGIWM------ 60
           +++  +  +A    CKA    ILYL LPLG NPK  +F  P+ ERIS++L  W       
Sbjct: 726 LEQNHLFRLAEMLDCKASGWPILYLGLPLGENPKACSFWDPVIERISRRLDGWQKARRGR 785

Query: 61  --------------REAGGLGIDCVLKRNKCLLSKWGWRFSVEISTLWHMVVASLYGYDH 120
                         +  GGLG   +  RN  LL KW WR+  E S LWH V+ S+YG   
Sbjct: 786 QKDHLVNWDVVCKPKSRGGLGFVKISVRNVALLGKWLWRYPREGSALWHQVILSIYGSHS 845

[Close]

BLAST of Moc09g10570 vs. ExPASy TrEMBL
Match: A0A438G251 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1163 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 7.3e-17
Identity = 53/162 (32.72%), Postives = 70/162 (43.21%), Query Frame = 0


Query: 1   MDEQRVVHVASSFSCKAERLLILYLSLPLGGNPKLDAFRSPIQERISKKLGIWM------ 60
           +D   +  +A +  CKA    ILYL LPLGGNP+   F  P+ ERIS++L  W       
Sbjct: 166 LDHAHISRLAETLGCKASGWPILYLGLPLGGNPRAGGFWDPVIERISRRLDGWQKAYLSF 225

Query: 61  ----------------------------------REAGGLGIDCVLKRNKCLLSKWGWRF 120
                                             +E GGL    +  RN  LL KW WR+
Sbjct: 226 GGRITLIQSCLTHMPWIGEGKKDHLVRWDVVCKPKEIGGLSFGNISLRNLALLGKWLWRY 285

Query: 121 SVEISTLWHMVVASLYGYDHFGWNAVPKIHGSSRIPWNNINE 123
             E S LWH V+ S+YG    GW+A   +  S R PW  I++
Sbjct: 286 PREGSALWHQVILSIYGSHSNGWDANTIVRWSHRCPWKAISQ 327

The following BLAST results are available for this feature:

BLAST of Moc09g10570 vs. NCBI nr


Match Name	E-value	Identity	Description
RVX22996.1	3.6e-18	41.67	putative mitochondrial protein [Vitis vinifera]	[more]
CAN83561.1	3.6e-18	43.33	hypothetical protein VITISV_024106 [Vitis vinifera]	[more]
RVW51280.1	1.0e-17	40.91	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
RVW90395.1	1.0e-17	40.91	hypothetical protein CK203_045762 [Vitis vinifera]	[more]
RVW75038.1	1.0e-17	35.62	LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]	[more]

BLAST of Moc09g10570 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g10570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438HTK2	5.1e-18	35.29	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=Pol_...	[more]
A0A438GS85	5.1e-18	35.62	LINE-1 retrotransposable element ORF2 protein OS=Vitis vinifera OX=29760 GN=LORF...	[more]
A0A438HBI4	2.5e-17	33.75	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438KJ67	5.6e-17	36.43	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438G251	7.3e-17	32.72	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDp000001_1163 ...	[more]

BLAST of Moc09g10570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g10570.1	Moc09g10570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity