Moc09g09980 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g09980
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transposon TX1 uncharacterized
Location	chr9: 8450184 .. 8453245 (+)
RNA-Seq Expression	Moc09g09980
Synteny	Moc09g09980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGATGGTGCGCGAAGGTGCCCAAAGGCGCTCGCCTGGGCACCTTGCAAGGCGCACCTGGGCGAAAACGCCTTGCCTCTCGCCTGAGGCGAACGCCCGGGTGCGCTTCGAAAACACTACCTTCTACATATGAAAATGATTGTGACTTTAAAGATATCTGGCACAAGTGCACCAACCATGTTAACACCAATTATTTTCATTATTCTTGATGGCTATCTCTTTAAAGGGGATTGATGGTGTATACCACACACATCATTAAGGGAAACCTTAATAAAAGATTTACACAGTGGAGGCTTGGCCGGCCACTTAGGTCGTGACAAAACCTATGATCTAGCGGCCTCAAGATTCTTTTGGCCTCAGTTAAGGACAGACATTAACAATTTTGTGAGCCGTTGCCTTATATGCCAGACGGCTAAAGGGCAATCTCAGAATATCGAGCTCTACACTCCCCTCCCAATCCCTCAATCCATATGGGAAGATCTCTCAATGGATTTTATCCTCGGATTGCCAAAAACACAATGAGGATATGATTCAGTACTGGTAGTTGTGGATCGCTTTAGCAAGATGCATCATTTCCTACCTTGTAAAAAGACATCGAATGCTCTCTATATTGCTAATCTTTTCTTTAGGGAAATAGTAAGACTACATGGCATCCCAAAAACAATTGTTTCATATCGGGATGTAAAATTTTTGAGCCACTTTTGGAAAATGTTGTGGAAAAAATTTGATACCGGTTTGAGATTAGCACAACCAGTCATCCTCAAACGGATGGCCAAACAGAGGTTACAAATAGAACTTTGGGCAACCTTATACACTGCCTATGGGGATCTAAACCAACTTAATGGGATCTCACATTAGCATAAGCTGAATTCGCCTACAATCATATGCGCAATCGATCCACAGGGAAGTCCCCATTTGAGATCGTTTATACAAAACTTCCTAGACTTATGTGGAACTCGCTAACTTACCATCTTCTATTGATCTTAATCAAGAGGTGGAACTAATGGCAGAACGAATTATAGACTTGCATAAAGAATTGACAGAAAACCTCACCAAAGCAGCAGCATCCTACAAAACTGCAGCAGACACACATAGACGACAGAAGACATTTGAAGTAGGGGACCTAGTCATGGTGTACCTAAAGAAATCTCGCTTTCCTAAAGGAACCTATAGCAAACTCAACAACAAAAAGATCAGTCCATTTAAGATAACTTCACAAGTATGGCGATAATGCATACAAAGTGAATCTACCAGAAGACCTTCACATAACTCCCATATTCAATGTAGCTGATATCTATGACTATAAAGTTGAGGATGCGTTTACCCTAGCTAACTAAACTCAAGGACGAGTTTTTTCGTAGAGGGAGGGAATTTGATGTAACTCTTAGTTACCGTTTTATAGCCGTTAGCCATTTACATTTAAAACCATCTGTTAAAGAATTAGTTAGTTAGTTGTTAGTCGGGCTGCCAGCTTATAAAAGCCAAAGCCCGCCTCTCTGTTTTGAATAATAAGAAATTTCAGAGTTTTCTTTCATTTGGTCTACACCAATGGTCATCCGAAAGATCTTCTAGTGGTCAAATTTCGACGGCCATGAAAGCTTTCAATTCCATTATTGAGGAATTAGAACTTCTGAAGGTGCCCATTTCCAATGGTAAGTTTACATGGTCTAAGGCTAGTAATGACTTCGTTCACTTTTTGATTGATAGATTCTTATTCTCTAAGGAGTGGGACAAAAGAGTCTCAAGGGCCGAGAGGATCATGTCGGATCATTTTCTCCTTTTGCTGGAAGCATGAGATTTATCTTGGGGCTGGCCCTTCTCCTTTTCGGTTCTACAATTCTTGGCAAAAAAATAAGGAGAGTATTCGTATTATCGAAGGAAAATTGGCTGCTTACACTTATTATGGATAGGCTGGATTAGGAGTGTACACGGGTTGGGTTGGGTCGGTTTAAATAGTTCTATTGGACCAACCTGAATTTTTGGGTCGGCCAGTTTGTCTACCCAAGGGAACCAAATCAAGTTGGCAACCCAACTCTTATATTTTCGGGTTGGGCTGGGTTGGTTCACCGGGTTGTAACATTTTTCTTTTTAATAATAACAACAGATCTGAAATACAATGGAACGCGAAGATGCATCACAAACTCAGATCAACACAATCGAGCGAGGGGATATTGCAACACAAAACCCAAAAAACAGATATGAAACACAATCGAATCTGGGGATGCAACACGGACCCAAAACAGATCTGAGACACAATCGAATGTGGGGATGCAATAGAACCCAAAATAACATATCTGAAACATAAATGTCAAGAGATGAGAGGGAGACTGTGGGAGATGGGAGAAAAATAAGACTGACCTACAATGAGAGATGAACGATTGCATGGAGAGAATGTGAGTGTGAGAATGAGAGTGAGAGGAGAGGAGAGATGAAGTGAAAAAGGAGATGAGAGAGACCTGAGAGATGAAAGGACAGATCAGAGAGAGAGAGAAGAGGTAGGGCAACTTTGCAAAAAAAGAGGAGGTAGGCGGCAGAAGATGAAAGGAGAGATGAGAGAGAGAAAAGGTAGGGCAACTTTGCAAAAAGGGAGGAGGTAGGCGGCAGAAACCCTAACATATATTATATATATTTATAAAAAGTTTGTTCGGTTTGGGTTGAACCGGCCTTTTATGTCTTAAACCCGTGAACCGAACCGAATTGGTCGGTTCTTTAAACACTTAAACCAACCTAAACCGAGCACTTATCTAACCCAACCCAACCCTTACGGTTCAGGTTCTTCGGGTTACCGGGTCTTTTGTACACCCCTAGGCTGGATTTGCCCTTTCTTCCAAGCTAAGAAATCTAAAGGCACCTCTTAAACAGTGGCATTTGAAGAATGAAAAGAAGAAAGAGGAGAAAGAGGAATTGATCATCAATGATATATCCTCCCTTGATCTCTTAGAAGAATGTTTTGGCTTATCTTTCGGTGAACAAGATAAGCGTTGTGCCCTTCAAAATGACCTTCTCAATATTTATATTAAGGAAGAGAGGACTTTGATTCAGAAGTGCAAAGTTCACTAG

mRNA sequence

ATGGCGATGGTGCGCGAAGGTGCCCAAAGGCGCTCGCCTGGGCACCTTGCAAGGCGCACCTGGGCGAAAACGCCTTGCCTCTCGCCTGAGGCGAACGCCCGGGCTGGATTTGCCCTTTCTTCCAAGCTAAGAAATCTAAAGGCACCTCTTAAACAGTGGCATTTGAAGAATGAAAAGAAGAAAGAGGAGAAAGAGGAATTGATCATCAATGATATATCCTCCCTTGATCTCTTAGAAGAATGTTTTGGCTTATCTTTCGGTGAACAAGATAAGCGTTGTGCCCTTCAAAATGACCTTCTCAATATTTATATTAAGGAAGAGAGGACTTTGATTCAGAAGTGCAAAGTTCACTAG

Coding sequence (CDS)

ATGGCGATGGTGCGCGAAGGTGCCCAAAGGCGCTCGCCTGGGCACCTTGCAAGGCGCACCTGGGCGAAAACGCCTTGCCTCTCGCCTGAGGCGAACGCCCGGGCTGGATTTGCCCTTTCTTCCAAGCTAAGAAATCTAAAGGCACCTCTTAAACAGTGGCATTTGAAGAATGAAAAGAAGAAAGAGGAGAAAGAGGAATTGATCATCAATGATATATCCTCCCTTGATCTCTTAGAAGAATGTTTTGGCTTATCTTTCGGTGAACAAGATAAGCGTTGTGCCCTTCAAAATGACCTTCTCAATATTTATATTAAGGAAGAGAGGACTTTGATTCAGAAGTGCAAAGTTCACTAG

Protein sequence

MAMVREGAQRRSPGHLARRTWAKTPCLSPEANARAGFALSSKLRNLKAPLKQWHLKNEKKKEEKEELIINDISSLDLLEECFGLSFGEQDKRCALQNDLLNIYIKEERTLIQKCKVH

Homology

[Close]

BLAST of Moc09g09980 vs. NCBI nr
Match: XP_022159051.1 (uncharacterized protein LOC111025493 [Momordica charantia])

HSP 1 Score: 66.2 bits (160), Expect = 2.1e-07
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 55  LKNEKKKEEKEELIINDISSLDLLEECFGLSFGEQDKRCALQNDLLNIYIKEERTLIQKC 114
           +  + +K+ K   I+ DIS+LD+  +CFGLS  +++ R +LQ DLLN+YIKEER LIQ+C
Sbjct: 53  ISRKTEKQGKSNQILQDISNLDVKAKCFGLSDEDKELRXSLQKDLLNVYIKEERILIQRC 112

Query: 115 KV 117
           K+
Sbjct: 113 KL 114

[Close]

BLAST of Moc09g09980 vs. NCBI nr
Match: XP_038884536.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 35  AGFALSSKLRNLKAPLKQWHLKNEKKKEEKEELIINDISSLDLLEECFGLSFGEQDKRCA 94
           AGFAL S+LR +K  +K+W  ++EK ++ +EE ++ +I   DL  +       E+D R +
Sbjct: 129 AGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLENFSAEEDVRVS 188

Query: 95  LQNDLLNIYIKEERTLIQKCKVH 118
           L+ DLL++Y  EER LIQK K++
Sbjct: 189 LKADLLSLYQAEERDLIQKSKLN 211

[Close]

BLAST of Moc09g09980 vs. NCBI nr
Match: XP_038884537.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 35  AGFALSSKLRNLKAPLKQWHLKNEKKKEEKEELIINDISSLDLLEECFGLSFGEQDKRCA 94
           AGFAL S+LR +K  +K+W  ++EK ++ +EE ++ +I   DL  +       E+D R +
Sbjct: 129 AGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLENFSAEEDVRVS 188

Query: 95  LQNDLLNIYIKEERTLIQKCKVH 118
           L+ DLL++Y  EER LIQK K++
Sbjct: 189 LKADLLSLYQAEERDLIQKSKLN 211

[Close]

BLAST of Moc09g09980 vs. NCBI nr
Match: XP_038884535.1 (DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 0


Query: 35  AGFALSSKLRNLKAPLKQWHLKNEKKKEEKEELIINDISSLDLLEECFGLSFGEQDKRCA 94
           AGFAL S+LR +K  +K+W  ++EK ++ +EE ++ +I   DL  +       E+D R +
Sbjct: 129 AGFALYSRLRRVKQSVKRWLAEHEKDQKIREESLLKEIKEKDLQADTLENFSAEEDVRVS 188

Query: 95  LQNDLLNIYIKEERTLIQKCKVH 118
           L+ DLL++Y  EER LIQK K++
Sbjct: 189 LKADLLSLYQAEERDLIQKSKLN 211

[Close]

BLAST of Moc09g09980 vs. NCBI nr
Match: XP_038889274.1 (uncharacterized protein LOC120079176 [Benincasa hispida])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 27  LSPEANARAGFALSSKLRNLKAPLKQWHLKNEKKKEEKEELIINDISSLDLLEECFGLSF 86
           LS EA    GF+L+ KL+ +K  +K+WH K ++ +  KEE ++ +I   D L +C  LS 
Sbjct: 55  LSSEA---PGFSLNQKLKKVKTTVKEWHSKFQEAQRRKEEGLLEEIEKWDALADCSTLSS 114

Query: 87  GEQDKRCALQNDLLNIYIKEERTLIQK 114
            E   R  L+ DL+++Y  +E  LIQK
Sbjct: 115 SEMAIRSTLKADLMSLYRLDEVNLIQK 138

[Close]

BLAST of Moc09g09980 vs. ExPASy TrEMBL
Match: A0A6J1E2R6 (uncharacterized protein LOC111025493 OS=Momordica charantia OX=3673 GN=LOC111025493 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 0


Query: 55  LKNEKKKEEKEELIINDISSLDLLEECFGLSFGEQDKRCALQNDLLNIYIKEERTLIQKC 114
           +  + +K+ K   I+ DIS+LD+  +CFGLS  +++ R +LQ DLLN+YIKEER LIQ+C
Sbjct: 53  ISRKTEKQGKSNQILQDISNLDVKAKCFGLSDEDKELRXSLQKDLLNVYIKEERILIQRC 112

Query: 115 KV 117
           K+
Sbjct: 113 KL 114

[Close]

BLAST of Moc09g09980 vs. ExPASy TrEMBL
Match: A0A151QYX4 (Transposon TX1 uncharacterized OS=Cajanus cajan OX=3821 GN=KK1_043520 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.0e-04
Identity = 30/80 (37.50%), Postives = 47/80 (58.75%), Query Frame = 0


Query: 37  FALSSKLRNLKAPLKQWHLKNEKKKEEKEELIINDISSLDLLEECFGLSFGEQDKRCALQ 96
           + L  KLR LK+ LK W+L++ +  +  ++ I+ D++ LD  EE  GLS  E  KR  LQ
Sbjct: 228 YVLKEKLRVLKSKLKHWNLESFENPQALQQRIVKDLNYLDKKEENLGLSEEEIHKRVELQ 287

Query: 97  NDLLNIYIKEERTLIQKCKV 117
           N+   + I+ E  L Q+ +V
Sbjct: 288 NEFWKVAIRNEAVLSQQSRV 307

The following BLAST results are available for this feature:

BLAST of Moc09g09980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159051.1	2.1e-07	50.00	uncharacterized protein LOC111025493 [Momordica charantia]	[more]
XP_038884536.1	1.8e-06	40.96	DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Benincasa hispida]	[more]
XP_038884537.1	1.8e-06	40.96	DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Benincasa hispida]	[more]
XP_038884535.1	1.8e-06	40.96	DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Benincasa hispida]	[more]
XP_038889274.1	1.5e-05	39.08	uncharacterized protein LOC120079176 [Benincasa hispida]	[more]

BLAST of Moc09g09980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g09980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2R6	1.0e-07	50.00	uncharacterized protein LOC111025493 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A151QYX4	4.0e-04	37.50	Transposon TX1 uncharacterized OS=Cajanus cajan OX=3821 GN=KK1_043520 PE=4 SV=1	[more]

BLAST of Moc09g09980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 50..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g09980.1	Moc09g09980.1	mRNA