Moc09g09890 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g09890
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Descriptioneukaryotic translation initiation factor 3 subunit C-like
Locationchr9: 8354101 .. 8356477 (-)
RNA-Seq ExpressionMoc09g09890
SyntenyMoc09g09890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACATTACAGAGGCACATACACTTAAAAAGACGCCGGACAAATGGTCAAAACGTAGCAAAACAGAAATCGAAGAACCGGTGAAAAAAAAGAAAGATCAACCGAGTAAAACAAAAGGGGATAATGAAAAGGTTAAGGAAAAGAAGAAAACCAAGAAGAACCATAAGCGACCAAATGAAAAGAACGAGGTAAATATGTTTTAAACTCGGTTTGTATGAATGTAGTTGCACATTCTAATATTTCCTACTCTCCAACAGGATGTTCAAAAGTCAAATGACAGGGAATCACCCGATGATAACGAATCTTCAGACGAATACAAAATGAACTACCGCAACAATAAGGAAGAATCAATGATCGAATCAGAAGAGATAGTTTCTCGAGCCAAAAAAAAAAATACAGCTTAAAAAAGGTATGTTACTATAAAATTTAATTCCCAATAAAGATAAAGCATAAGTGTGCTAAATTTGTGGTTTCAGATTATTGTAAAAAAAAAAAAACCTACAATGAAGGTTTCAAATAAGGATAAGGATAAGACCAGAAGGAGAACACTAAAAACGTGTTGAAGTAGAAGGACGAGGATGAAATTGAGGTATTTTCTTATTCATACGTAGTATATAGTAAAACGTACACTGTATTCAACGTGGTTTACTTAGTCTATAATTTGTAGTCTGCTGCCATAATTTCATTACTTACTTAAATTTTACAATTGTTAAGGATGATGTGTACCTAATAGAGGCATCAAGGAGAAATTGGGCACTGAAAATAAATCATTGCTGCAAGGGGGAATTATGGATAGTATTTCGAACAAACATAGGCGAGAAACATAGTGATAGGTTTAGGAAAACCTGTTTTGACCATTCATTGGACTTCTTAATTAGCAAAACCTCATCTCAACTTCTTTTTCACCTAATCCAGCGCCTTTGTAAACTATGAAAGATATCAGAACTAAAGTTTTATCATGGGGGAAAGATATTAAAATTTGGATTCAAGAAACTTGCCCTAGTGACAGGGTTGAACTGTCGTCCATTATCCCAGATAGACATGGATATGGTGAAGAGGGAATGACACATAAGGAGCGTTTATTTTGAGAGGGAGAAGTCCGTGACGAGGAAACACCTACACCTTGCTTTCAAGGTTAACAAGAATGCACCTAAAGATGATATGGTGAAGATGGTCTTGCTTTATTGTTTAAAGGAGTTTTCTTTTACCACATCAAGACTCGCTTCATGTAGAGATGAACCACATCCTAATGGTAGATGATGGGGGACGATAGCGTTTGACCTTTTTATCGACTACATGAAAAAGGCGCCAGACAGTTGGGGGTTAACAGGCAAAGGGATCAGTGGACTCATATCTGCGCTGATAGTGTGGGTGTACGAGGTGATACCTTCACTTAGTATCCCACCAAATTATTATGCACGGAGGATTGGGCATGGCACTCCGTAAATGCTCAACTAGGACTACAGCCAGAATGGAAGGAATTGGCTGCAAAGATTTTTGACTTACCAACGGTAATATTCTTAGTTACTCTTTTTTTAAAATAAAATCTACTGTCAACCTGATTAAATACTAAATACCTCACTATCTTGTGTAGCTAGAGTTGGTGTGCCAATGGAGCCCTTCGAAGAGGAACTAACCATGCCATATAAGGTATCATTCCTCGAAGAGATAGATGGAACAGTGATGGGAGGTCTCCAAGCCCTACCATTTGAGACTGCAATAGGTATAAATGAGTGTTTAACTATAATTTAAAAGAAGCAGGATGAAGTTGTACAAACCCACAATGAATTTGCAGGGAAGCTTGATGGCATTATGACAAACTTAAATCTGATTCTTTGCCAATTGAATACAAGTGCTGGATTGAAGGGTGATAGGCTCAGTAGGTTTATGATGAAAGGGGACATGAATGTGGGAACTACATTCGAAACTATCTACAAGGTAAATATACTCAGCTACCTTGTAGGTTTATTACATTTTCACCCTGATATATGAAGGTTTGAAATGTTGCAGGGGACATCATTATTCACCAATGACCTTGAGACTCTGGATGCTAAAAAAAGATAAGGAAAAGAATGACAATCCAGTTGATGATCACTACCAAGAAAAAACCTCAACCGTACAGAGGAAAGATGATGAAGAGGACCATATAGGTGGACAAAGACAACAACACCCTGCAGTTGAGCAATGTGTCCAGACGGGTGCCACCCCGAAAATTGGTGCAAGAAAGGTCTTTGAAAAAGAAAGCACTCGAGACAAAACTCAGGTAGGGAAAAAGGAAAATAATATGTAATGCACTTGATGATATCTGGTATATGAACTCAGGATGTTTAGTATATGATGCAGGCATGTGATGGACTTGATGATATTGATGAATGA

mRNA sequence

ATGGACATTACAGAGGCACATACACTTAAAAAGACGCCGGACAAATGGTCAAAACGTAGCAAAACAGAAATCGAAGAACCGGTGAAAAAAAAGAAAGATCAACCGAGTAAAACAAAAGGGGATAATGAAAAGGTTAAGGAAAAGAAGAAAACCAAGAAGAACCATAAGCGACCAAATGAAAAGAACGAGGATGTTCAAAAGTCAAATGACAGGGAATCACCCGATGATAACGAATCTTCAGACGAATACAAAATGAACTACCGCAACAATAAGGAAGAATCAATGATCGAATCAGAAGAGATAGTTAACAAGAATGCACCTAAAGATGATATGGTGAAGATGGTCTTGCTTTATTGTTTAAAGGAGTTTTCTTTTACCACATCAAGACTCGCTTCATGTAGAGATGAACCACATCCTAATGCTAGAGTTGGTGTGCCAATGGAGCCCTTCGAAGAGGAACTAACCATGCCATATAAGGTATCATTCCTCGAAGAGATAGATGGAACAGTGATGGGAGGTCTCCAAGCCCTACCATTTGAGACTGCAATAGGGAAGCTTGATGGCATTATGACAAACTTAAATCTGATTCTTTGCCAATTGAATACAAGTGCTGGATTGAAGGGTGATAGGCTCAGTAGGGGACATCATTATTCACCAATGACCTTGAGACTCTGGATGCTAAAAAAAGATAAGGAAAAGAATGACAATCCAGTTGATGATCACTACCAAGAAAAAACCTCAACCGTACAGAGGAAAGATGATGAAGAGGACCATATAGGTGGACAAAGACAACAACACCCTGCAGTTGAGCAATGTGTCCAGACGGGTGCCACCCCGAAAATTGGTGCAAGAAAGGTCTTTGAAAAAGAAAGCACTCGAGACAAAACTCAGGCATGTGATGGACTTGATGATATTGATGAATGA

Coding sequence (CDS)

ATGGACATTACAGAGGCACATACACTTAAAAAGACGCCGGACAAATGGTCAAAACGTAGCAAAACAGAAATCGAAGAACCGGTGAAAAAAAAGAAAGATCAACCGAGTAAAACAAAAGGGGATAATGAAAAGGTTAAGGAAAAGAAGAAAACCAAGAAGAACCATAAGCGACCAAATGAAAAGAACGAGGATGTTCAAAAGTCAAATGACAGGGAATCACCCGATGATAACGAATCTTCAGACGAATACAAAATGAACTACCGCAACAATAAGGAAGAATCAATGATCGAATCAGAAGAGATAGTTAACAAGAATGCACCTAAAGATGATATGGTGAAGATGGTCTTGCTTTATTGTTTAAAGGAGTTTTCTTTTACCACATCAAGACTCGCTTCATGTAGAGATGAACCACATCCTAATGCTAGAGTTGGTGTGCCAATGGAGCCCTTCGAAGAGGAACTAACCATGCCATATAAGGTATCATTCCTCGAAGAGATAGATGGAACAGTGATGGGAGGTCTCCAAGCCCTACCATTTGAGACTGCAATAGGGAAGCTTGATGGCATTATGACAAACTTAAATCTGATTCTTTGCCAATTGAATACAAGTGCTGGATTGAAGGGTGATAGGCTCAGTAGGGGACATCATTATTCACCAATGACCTTGAGACTCTGGATGCTAAAAAAAGATAAGGAAAAGAATGACAATCCAGTTGATGATCACTACCAAGAAAAAACCTCAACCGTACAGAGGAAAGATGATGAAGAGGACCATATAGGTGGACAAAGACAACAACACCCTGCAGTTGAGCAATGTGTCCAGACGGGTGCCACCCCGAAAATTGGTGCAAGAAAGGTCTTTGAAAAAGAAAGCACTCGAGACAAAACTCAGGCATGTGATGGACTTGATGATATTGATGAATGA

Protein sequence

MDITEAHTLKKTPDKWSKRSKTEIEEPVKKKKDQPSKTKGDNEKVKEKKKTKKNHKRPNEKNEDVQKSNDRESPDDNESSDEYKMNYRNNKEESMIESEEIVNKNAPKDDMVKMVLLYCLKEFSFTTSRLASCRDEPHPNARVGVPMEPFEEELTMPYKVSFLEEIDGTVMGGLQALPFETAIGKLDGIMTNLNLILCQLNTSAGLKGDRLSRGHHYSPMTLRLWMLKKDKEKNDNPVDDHYQEKTSTVQRKDDEEDHIGGQRQQHPAVEQCVQTGATPKIGARKVFEKESTRDKTQACDGLDDIDE
Homology
[Close]
BLAST of Moc09g09890 vs. NCBI nr
Match: XP_022141935.1 (eukaryotic translation initiation factor 3 subunit C-like [Momordica charantia])

HSP 1 Score: 99.4 bits (246), Expect = 5.8e-17
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 0 

Query: 1   MDITEAHTLKKTPDKWSKRSKTEIEEPVKKKKDQPSKTKGDNEKVKEKKKTKKNHKRPNE 60
           MD  +A   KKTPDK SKR KTE EE VKK+KDQPSKTKG++EKV EKKK K+N+   ++
Sbjct: 80  MDTIKARAPKKTPDKKSKRGKTENEEQVKKRKDQPSKTKGNDEKVAEKKKLKENNGWLSD 139

Query: 61  KNEDVQKSNDRESPDDNESSDEYKMNYRNNKEESMIESEEIVNK 105
           K EDVQ+SND ES DDNESSDEYK+N  +++EESM ES+EIV++
Sbjct: 140 KCEDVQQSNDGESQDDNESSDEYKINNSDHEEESMTESKEIVSQ 183

[Close]
BLAST of Moc09g09890 vs. ExPASy TrEMBL
Match: A0A6J1CJI4 (eukaryotic translation initiation factor 3 subunit C-like OS=Momordica charantia OX=3673 GN=LOC111012192 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-17
Identity = 68/104 (65.38%), Postives = 84/104 (80.77%), Query Frame = 0 

Query: 1   MDITEAHTLKKTPDKWSKRSKTEIEEPVKKKKDQPSKTKGDNEKVKEKKKTKKNHKRPNE 60
           MD  +A   KKTPDK SKR KTE EE VKK+KDQPSKTKG++EKV EKKK K+N+   ++
Sbjct: 80  MDTIKARAPKKTPDKKSKRGKTENEEQVKKRKDQPSKTKGNDEKVAEKKKLKENNGWLSD 139

Query: 61  KNEDVQKSNDRESPDDNESSDEYKMNYRNNKEESMIESEEIVNK 105
           K EDVQ+SND ES DDNESSDEYK+N  +++EESM ES+EIV++
Sbjct: 140 KCEDVQQSNDGESQDDNESSDEYKINNSDHEEESMTESKEIVSQ 183

The following BLAST results are available for this feature:
BLAST of Moc09g09890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022141935.15.8e-1765.38eukaryotic translation initiation factor 3 subunit C-like [Momordica charantia][more]
BLAST of Moc09g09890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g09890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CJI42.8e-1765.38eukaryotic translation initiation factor 3 subunit C-like OS=Momordica charantia... [more]
BLAST of Moc09g09890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..307
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 57..92
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 233..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 283..307

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g09890.1Moc09g09890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006413 translational initiation
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003743 translation initiation factor activity