Moc09g09780 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g09780
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr9: 8222672 .. 8232660 (+)
RNA-Seq Expression	Moc09g09780
Synteny	Moc09g09780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTGTCGTGGGCGGAACCATTGCCTTGAAAGCAAAATCGGTATGACCTTGGTGCTAAATCGTTTTACTGTCGGTAAGCTCCCCAAGGTTAACACAACCTCCAACTCAGACGTGCACTCATCGGAATGGGAGTGGAATCGATCTCGTGCTCAGTTTAGGGTAGTGGAGAGAACTGGAAAATTGAAGAACGGTGTAAGTGAGAATGGTGGTGGAGAACTTGAAAGAATGGGATGATTTAAAATAGTAGAGAATGACCCTTATTTATACTAATGCAGTGGCCCAAAAATAGAACTTGAATTTTTTAAAATAAAAATGTTTTGGTCACCACGTGTACTTGAAAGGCAACCTTCTTCTCTACACCTACTACTTCAACCAAGTTTTTCATCCATTCACCTATCCATGAATCTCTCAAATTCATTTGTCATTCCCAACAAAATTTACCTTAAGTAATTGAGTGAATGACAAATTATTTTGTCAATCAGTGCATGGGCCAACATTTTTATTCACAAATATTGCTTATTGACTTAAAATTGGCAACAATTTTTTTTATACACATTGATCTCCTATTTTTTAATATAAAAAAGAAAAAATCAAACATTTAGTTCTAATAATTTTTTTTTCAATACGTATCTCTAATAAATATTGACAATAGAATAAGTATAATATTTATTTTTTCTTACCTCAAACGATGTATCAAAATTATGACTATCATTCATGATCTTCCCTTGTGTATCCTTCTCAAAAATAATTTGACTGTTTTCCTAATTGAAAGAAAAAAATCATTAAAAGAACTAAATATATTTAGGATCAATTGTTTGATATTGTAGTTGTGTGAGTGTTAACTGATTTGATGAAGAAGCTTTGTTTGACTTTACTTTTTTTTTTTTTTGCATCTTCTCTTTTCAAGTGAATCTTTCAATCGGTTACAAGGATGACCAATTGTAGGCTTTCTCTTAACTCCACGTACTTATACAATAGCACTATTATTGGTATATCCATATCATTTCTCTCATCTTTGCACTATTACCAACCAAACTTGAATCTTGTACATTGCCTAGCTGGTTAGTCTCTACAAAATTATTTCTTTTCATTTCTCTCCAAATCTTTGAATAATTGAGTAAACTTTTTAGAAGCATACCCAAACAACTTTTCATGTTCTGTGGCTAGTGAAGTAATTTGGCAAAAGTTACGACATAAGTGGTTGTATCATTTTCCATTTGACTCTTTAAAATTTCCATTAAACTCATTCATTGGATTCCCTAAATCACTTGAGTTATTGCATCTTTTGTCCACTTTTTAAAAATATATGTTGTAGGAATTCTTATCACATTCTTCTTATCAAGCACCTTAAGCACATGACTGCATAAAATACCAATGAAAATGAACTTCATGCAACTACATGTGACAGTTTGGGTTGAAGCATCATATCTGACCAACCAATGAAAAGATCTTTCAGGAAATGATACTTTATACTCTAATGTATCATTAAACTTACCAATTTTGTAGATATTACAATTAAGAATATCCATATACTCTTTTTGGAACAATTTAAACATCTATGGTATATAAATTTCTACCCCAATGCTGTAAGGTGTTGTTTGATTCATCTTGAAATCTGCAATCAATTTCTCATATCTTTGATCTGTTAACACTCTTTCATAATGTTCAAGAAAACGTAAAATGTCATAGTTGGACTTTAAATATTTCTTCAATACATTATTCATACTTTCACTTCGTTGTGTGTTTTTCATGTCAGCCGTAAAAGTATGTCGCTCATAAACCATTGCCCACTTTGATTGCAACTCAAACAAATCTTTCAACCACTTATTATATGTGAAGATTATACTTTTCTAGCATTTGTTGTCATGCTAACAACCAATGATCTTCATCTTCATAATCAAATACACAATTGTCAAAGTCGTGACTGAATTGGTTTAATCTATGAAAAACACATGACTCAAACTCTTAGCAGCATTCTGGAAAATATACCAAACACATAGTCGATGTTGAGCTTTAGGAAAGAGATCACATATTGCTTTAGCCATTGCTGCAGATTGATCAGTAAGAATTGTCTTTGATTGCTTTCCAGGCATTGCACCAAGAAAAGTTTCAAACAAACATTTAAAAGATTATGCAGTTTCATCATAAATTAAAGCTGCACCAAAATATCACTGATTGTTTATGATGATTCAACCCAACAAATGGTGCAAATGGTCGTCCAAGTTCATTTGTCCAATAAGTAGTGTCAAAACAAATAACATCTCCAAAAAGCTGATAATCACAAATAGAGCAGCGTGGATCAGCCCAAAAAATATTAATGATCATATCATCTTCATCAAGCTACAATGCATAAAGGAAATAAAAACTCCCCATTTATCTTTTTTTTTTAAATATTGTAATATGCTTCAGCTTCTTAATTTCCAAGTCTTGCTTTTTTCGCTCTTTATGTACATAATTTCTATCATCTTTATTCAAGAATCTCAAATGTTCTCTACCACCAACTTTCCTACTCATTAGTTTCATGGTTGCTTTAATTGAAATTCCTGATCTATCTGCATCATAAGTTGTCAAGAGAAATCATTAGATCTATTTCTACAATTTGTTAGAGGGTTGCTATTAGTCTGTTCACAATTAACAATTGTATATTACTGTTAGTTTTTTATAGGGCTGTTATTAGTATGTTCACAATTATATCTTACGATTAATTCTTTTGTTTGTATTTTGTTATATTCACCTGTTGGTCTATATAAACCACTGGTCATTCATTTAATAATGTAGAGAAAAATATACAATTTCTTCCTCCTCCGTTATTCTCTCTTCTAGTTCTTTCAGATATCATAACATGGTATCAAGAGCTATCATTTAACGATATTTTTTTTCTTTCTATCCTAGTCTGCCCATTATCATGAGCAACTCAACTCTATCTTAGAATTTGGATCAATCGTCTATTTCACAAGGAATCAATCCGGGTCACCATGTGACGACGATCAAACTTACGGAAAGCAATTATCTCCCATGGAAATTTCAAATTCTCAAAACATTACAAGGTTATCGACTAGATAACTTTGTTCTTTCGGATGATGAATCTCCAGCAAAATTTTTGCCACAATCTGGAGGTGTAGAAAGTTCTTCTACTTCTATTGAAGAGAATCCCACTCACTCGGCATGGATTCGCCAAGATCGTTTAATCTCCTCTTTGTTACTTGGCTCGATGACAGAAGAAGTTCTTCAAGAAATGCTTGATTGTAGTACTTCTCGAGAAATTTGGAAGAAAATTGAAGATACATATGCGACGAACAATCTGGCTAAAACTATGAGTTTCAAGAATCAGATGTAGACATTAAAGAAGGGAGGTATGTCTCTTAAGGATTATTTTTCAAAAAATGAAGAAATTGGCTGATTCTTTGAAAGCTATTGGCGAAAAGATTTCAACAAAAGATTATTGTGTATCTACTTTCTGGACTTGGAACGAATTATAATGCTATTGTTTATGTGATTATCGCCAAGTCTAGGGCTCTAACACTTCAAGAAGTTTATGGGCTTCTTCTTGCTCATGAGACACGTTCTGAACAAAATTTGGCAAATCTAGATGGTTCTACTCCTTCTATGAATCTTACCTATTAGGGAAGCATTAATAAGAAACCAAACTCATCTTCTAATGATCAGAGAACAAATAGTTCTCAATCTAATGCCAATAGAGGAGGTCGAAATCGTGGCTTCAACAACAATAACAAGGGAAATCGCAACTGGAATACCAATAATCGGCCTCAATGTCAACTGTGTGGACGATTTGATCACATTGCCCTACGTTGTTATCTTCGTTTTGATACTACTTTCCACGAGGCTAATGGACAAACTAATGGACAGAATCATGGTTCAAATACCTCAAACTCATATCAATTTTCTGGGCATCAGAATCCTTCAATGCAGGCTCTAATGGTGACACCAATTCTCAATATTGATTCGGGTGCATCCAATCACGTTACTAATGATTTTTCCAATCTATTAGTGAGTACTCCCTGCACGAATGATTCCAGAGTATTGGTTGGTAATGGTTCAGGTTTGTCTATTCATCATATTGGTTCTTCCAAACTTATTTCATCTGAAACTAAATCCTTTAACCTTCGTAACTTGTTACATGTTCCTAGTATTACAAAGAATCTCATTAGCATTAGCCAATTTGCTAAAGACAATGATGTTTTCTTTGAGTTTCACCATTCTATTTGTTTTGTGAAGGATCGTCTGACTGGAACAACACTTCTCCAAGGACGGATGCATGAAGGACTGTATAATTTTCAACTAAATTCATCCCAAACTCAAGACTTAATTCTACCTGCTTCTAAATATGTTGCAGATGCTTCTTCATATACTTGTTCTACAAACATATAGATTATGCTTCTTCATCAAATAAATGTATTACATCTAATATTGATCTGTGACATAATTGTCCAAAACATTCAGCCACTCCTATTGTTAAATAAGTCTTAAATGAATGCAATATTTTTGTTGCTCATGCTGTTCATTCCTTTTGTAATGCATGCGCCATTGGAAAATCAACTTATTTGCCTTTTTCTCATTCCCAAACTAATGTTGTGGTCCCTGACTCCCTTATACCTCATCGAATATGATCTTTGGGGACCTGCTATTAGATCTTCTCAAAATGGTTATTGGTATTACATGAGCTTTGTTTGATGTATTCTCTGGATACACTTGGATTTTTCTAACTTCTAAATCTGAAGCTTATTCTACCTTTCTTTCCTTTTTCCTTCAAAGCTACTAGTGAAAAACTCTTGGGAACTTCCATTCGTATGCTTCAAACTGATTGGGGTGGAGAATTTCACTCTCTAACTCCCTATCGTAAAACTCAAGGCATCACTCATCGACTTTCGTGTCCTCATACTTCACAACAAAATGGAATATTAGAACGTAAACATAGACATACCGTTGATATGTGATTCACTTTCTTGTCTCAAGCTTCTCTTTCTCTACAACAATCCTACATCGCATCAGTCCAATGGAAAAGTTGTTCGATACAAAACCTCTCTACTCTTTTCTTAAAGTCTTTGGTTGTCTTTGTTTTCCATGTCTTCAACATTATAATTCTCACAAATTACAATTTGGTTCCTCACCTTGTTTGTTCATTGGTTTTAGCAATACGCATAAAGACTATAAATGTTTAGACAATTCCGATCATCTGTATATTTCACGAAATGTTCATTTTGATGAACACTCCTTTCCTGCTGCAAAAGGTACTTCTATACCTCTCTCTACTCAAAATTCTACTGCCAACAATCAGATTGTTTCAAATTCATTACCGATTATTTTACCTACTCCTATACCTACTCCTGCAGTCATACCTACTACTGCACAACCCAGTCCACATTCTGCTACCTCTCCAATACCTAATACATCAAACACACTGCCCCATGACCCTTGCCATGTACATGACCCCACCTTTGTACCTACCACGCCAACAAACACCTCTTTATCTTATACATCCTCTTAGACGACCATCCCCACGATTCCCAATATTTCCTCTCCAAACATTTCTCCTCGACTTTCTCCACAAATCCCTACTACCCTGCTTCCTTTACCAATTGCTCCTTTGGTTTCTAACACCCATTCTTTGGTTACACGTTCTAAGAATGGTATCTTCAAGCCCAAAGCTCTACTCACTGAATATATTGAAGTTAAACCCACCTCTGTCAAAGATGCCATCCATTATCCTCATTGGTTTCAAGCCATGAAAGAGGAATACGCTGCCCTCCTCAAGAATAATACTTGGTCTCTTGTTTCTAAGCCATCTATCATCGAGTTATTGGTTGCAAGTGGGTGTTTAAAATAAAAAGGAACTTCGATGGCTCTATTTCCAGATACAAGGTTTGTCTCGTAGCAAAAGGATTTCATCAAGTTGCTGATGTTGATGTCGATTATACTGAGACTTTTAGTCCAGTTATTAAACCTATACTACCATCCGTGTGTTGCTAACATATACCCTGGCTAACGGTTGGCAGCATTGTCAATTGGATATTAATAATGTATTCCTACATGACATTCTTAATGAAGCAGTATTTTTGGCAACCTCCTGACTTTGTGACTCATGGTAACTCTCATTTAGTATGCAAACGACACAAAGCATTGTATGGACTTAACAGGCTCCTCGCACATGGTTTGACAGGTTGTCTTCATTTCTTATCTCTATTGGTTTTCAATGTTCGAAGGCAGATCCATCCTTACTGTTTCGACACAAAGGCAACTTCAAATGTTATATTCTCATTTATGTTGAGATATTGTACTTATTGGATCTTCATCTACTGAAATTTCTAATCTTATTGCTATGTTACACACTCAATTTGTTCTTAAGGACCTTGGTATTTTAAGTTACTTCCTTGGGATTGAGGTGTCATATCCACCAAGAGAAGGTCTGTTTCTTTCTCAGACCAAGTACATTACTGATCTGTTACATAAAGTTGATATGTTTGAAGCAAAATCTGTTTCAACGCCAACGGTAAGTGGCTCTGTCCTGTCTGCCTTTGGAGGAGAAAATTTTTCTGATGCACAACTCTATAGACAAATTGTTGAAACCCTACAATATGCTACAATTACTCGGCCGGAGACTACCTACAGTGTCAATAAGATATGCCAATTTATGCACAATCCATCCTTAGTGCATTGGCAAACTGTCATAAGAATCCTACGTTATTTGAAGGGGACTTTTTCATTAGGTTTACATCTCAAATGTCCTGCAAATTTGAGGTTAAGTGCCTATGCTGATGCGGATTAGGCAGCCAATTCCGACGATTGAAAATCAACTTCCGGGTTCTGTATCCTTTAGGTGGCAACTTGTTGCTTGGTGGTCCAAAAAGCAGAGTATCATCACGTTCTAGTACAGAAGCAGAATTTCGAAGTATTGCTCTCGCAGCCATTGAATTGCTATGGTTACAAGCTCTGCTCACTAAACTCAACATTAAGTGTAAACCCAGTTTTACGTTCAAGAACAAAACACATGTAGAATTAGATATTTATGTTGTGTGAGATTTAATCCTTAAAAAACGCATCGTGGTACAACATCTACCAGCATTTGCTCAAATTGCCAACACATTTACAATGCCACTGCCTGCTTCTTCTTTTCATCGGATTTGTTCCAAACTCAATGTTTGTGCTGCTGCCGACATTGGTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGAAGAGAAATCATTAGTTCTATTTCTACAATTTGTTAGAGGGTTGTTATTAGTCTGTTCACAATTGTATGTTACAGTTAATTCTTCTGTTTGTATTGTTCTATTCACCAACTGGTCTATATAAACCACTGGTCATTCATTTAATAATGTAGAGAAGAATATACAATTTCTTCCTCGTCTGTTATTCTCTCTTCTAGTTCTATCCGATATTATAACATAAGCCAGAGCTTTTTGAGCATTGGAAATACTCCTATTGATTTTTAAAATATGTTTCATTGGTGTTCTAACAAGGTCATGATTGTGATTTCTATTAAAAAAACACAACTTTATATTGACCATTCTATCCAAGCAAACATGTTATTTGAGCTTTACATCCAGTCTTGAAAATTGGTTAAGCATATGAAGTACTTTCTCTTCGTTTGTCTACTCGACAAAACCCTTCTTTTGGGCAAAAAGTATTGTTCTTGAAATCTCTCCATTTTTCTTTTCCTACTATGATGTTGTTTCCTTACATTAAAAACAACATTTCCTCCATAATTGACATAAAACTTACACACATCCTCCACATAACTAAACTTCCATTCCAAAAACTGGCTTTGCAACTTCAAGATGAACTTCATAATTATTAAATAGTTGTTGCCCATGTAAACTTGTATCTTCTATGTTCTCCATAACTTACGCTAAGAATTCATGCATATAAAATATATAATTAGAAAATTTTTATGCAATAACATATCAATGATTTTATTTTAAAAAAAAAAACAAAAAGTAATAACAACAACAATGATAATACCAAATTGAATTAATATTGTAATAATCATCAACAATAAAAATGAGCTCTTCTCATTGAATAAAAAATAAAGAGCTTACACATATTATAGATAATAAGAAATAAAAACATAACTACTTAACGCTATAATAGAAAGATAACAACCCAAAACTTAAGAAATCAATTATGTACTAAATACTCTTGAGAAAAGTTACAAAATTACAAAAGGCTAATTATGTACTAAATACTCTTGAAAAGGTTATAAACTTTCTTTTAACGTAAAATTGAAAAAAAGTTACAAACTTTTTTTAACATAAAATTGAAAATCATATCTCATCAATGTACACCAAAATATTTTACAATAACAGATTAATGATTTAAGAAACAAAAAAAAAAACAAAACAAAAAATCGATTTATCTAATTTTAGAGATTTGGAGGGTTTCAATAAGGATTTGTTAGCTAAGCAAGTTTGGAGGGTTCTTAGTGAACCAAATCTCCTTGTTTCCAAGATTCTAGCATGTCGGTACTTCCCCAACAGCAATATTCTGGATGCAGATTTGGATAACAAAGCTTTCTATTTGTGGATGAGTCTTATGTGGGGCAGTGAGCTTCTTATTAAGGAGCGTAAGATGCGTGTGGGTGATGGTAGTTCAATCCGTATGTTTGAGGACCCTTGGATCCCGAGAGAATCGACTTTCAAACTGCTTTTCCGAGGTGGGGTGGGGCGGAGCCGCTAGTTTCTAATCTTATTTCTAATGGGGATTGGAACGTGGCGGCGTTGTCTTCCTTCTTGTGTCGTGAAGATGTGGAAGTGGTTAAGAGAATCCTTTTAAGCTCTACCAATAGGAGGACCTTTAGCTTTGAAATTATTATAAGAAGGGGTTGTATAGTGTGAAGAGCGGGTACAAATTGTTTATGAAGCTAAAGTGCCAAAAGCAGTCATCTAGTGATGGGAGCAACAACAAGATTTGGTCAGATTTGTGGAAGCTTAACATTCCTTCTAAGATAAAAATTTTTCTATGGAAGGCCCTTCACAATTGTATCCCGACAAGGTCCCGATTAAGGGAGCGGGGCATCAAGGTCATACCTCTTTGTCCTATGTGTTCTAGAAAGCTGGAATCTGTTCAACATGCCTTAATGGACTGTCCAATAGTTGCCGCGATCTGGAATCGGTGTTTTCCCTAGCTTTCGTCGAGATGCTGAGGGATGGACGACTTGCTATGCTGCTGGGAGCATTTGTGTGCTTCGTTTTCAAGGGATGATCGGGACCTCGCAGTGATGGTTATTGTGGGCTTGTTGGAATGACAGAAACAATATCTGCCACAACATTCAAGTGCCGAGTATATCAGTCAAGGCAGATTGGATAGTAAACTATTTAGAGAATTTCAAGAGGGCTATTCTAGGGCGTTTTACAAAGGGTTTGTCAAGCAAAATTGGGGGCTGGAAATTAGAAGATCAGCGTGATTTCTTACCTTAAACGGAAGGAGCCATCATCAATTGTTATGCTGCACGTAATCTGACAGAGGCTCAAATCGGTCTTGGGTTGGTGGTGAGATTTGGGCAGCATTTACTCAAGTATGCCTTGCACAATTCTATTGGGAGGGTACTCCCCTCTGATTGCAGAACTGATGGCGGTTCGGGAAGGGATTAGGCTTGCTGTACGACCGAGTCTTGGATGGGTGGTGGTTCTCTCAGACTCTTTGGAAGCGATCAATCTTCTTCGTGGGAGAGTTGTCTACCATTCAGAGACTGGTTTGTTGGTAGAGGAGATCTTGGAGCTGGAGAGTCATTTCTCAAGTATTGATTTCCTTCATGTAAATCGGAAGCATAATACGCTGGAAGATAGCTTAGCCAGACATGCGTCATTGTCCAAGGCTTCTCGTTTGTGGAACTCTCCTTTTCCTTTATGGTTATTGCCTTTACTGATTGATTCTCAGTCTACTGATGCAGCCCAAGAGGCAACTGGTTTTTTCTCTTAG

mRNA sequence

ATGTTGTGTCGTGGGCGGAACCATTGCCTTGAAAGCAAAATCGGTATGACCTTGGTGCTAAATCGTTTTACTGTCGGTAAGCTCCCCAAGGTTAACACAACCTCCAACTCAGACGTGCACTCATCGGAATGGGAGTGGAATCGATCTCGTGCTCAGTTTAGGGTAGTGGAGAGAACTGGAAAATTGAAGAACGGTAATTTGGATCAATCGTCTATTTCACAAGGAATCAATCCGGGTCACCATGTGACGACGATCAAACTTACGGAAAGCAATTATCTCCCATGGAAATTTCAAATTCTCAAAACATTACAAGGTTATCGACTAGATAACTTTGTTCTTTCGGATGATGAATCTCCAGCAAAATTTTTGCCACAATCTGGAGGTGTAGAAAGTTCTTCTACTTCTATTGAAGAGAATCCCACTCACTCGGCATGGATTCGCCAAGATCGTTTAATCTCCTCTTTGTTACTTGGCTCGATGACAGAAGAAGTTCTTCAAGAAATGCTTGATTGTAGTACTTCTCGAGAAATTTGGAAGAAAATTGAAGATACATATGCGACGAACAATCTGGCTAAAACTATGAGTTTCAAGAATCAGATATTTCAACAAAAGATTATTGTGTATCTACTTTCTGGACTTGGAACGAATTATAATGCTATTGTTTATGTGATTATCGCCAAGTCTAGGGCTCTAACACTTCAAGAAGGAAGCATTAATAAGAAACCAAACTCATCTTCTAATGATCAGAGAACAAATAGTTCTCAATCTAATGCCAATAGAGGAGGTCGAAATCGTGGCTTCAACAACAATAACAAGGGAAATCGCAACTGGAATACCAATAATCGGCCTCAATGTCAACTGTGTGGACGATTTGATCACATTGCCCTACGTTGTTATCTTCGTTTTGATACTACTTTCCACGAGGCTAATGGACAAACTAATGGACAGAATCATGGTTCAAATACCTCAAACTCATATCAATTTTCTGGGCATCAGAATCCTTCAATGCAGGCTCTAATGGTGACACCAATTCTCAATATTGATTCGGGTGCATCCAATCACGTTACTAATGATTTTTCCAATCTATTAGTGAGTACTCCCTGCACGAATGATTCCAGAGTATTGGTTGGTAATGGTTCAGCTGGAATCTGTTCAACATGCCTTAATGGACTGTCCAATAGTTGCCGCGATCTGGAATCGGTGTTTTCCCTAGCTTTCGTCGAGATGCTGAGGGATGGACGACTTGCTATGCTGCTGGGAGCATTTAAACAATATCTGCCACAACATTCAAGTGCCGAGTATATCAGTCAAGGCAGATTGGATAGTAAACTATTTAGAGAATTTCAAGAGGGCTATTCTAGGGCGTTTTACAAAGGAGGCTCAAATCGGTCTTGGGTTGGTGAACTGATGGCGGTTCGGGAAGGGATTAGGCTTGCTGTACGACCGAGTCTTGGATGGGTGGTGGTTCTCTCAGACTCTTTGGAAGCGATCAATCTTCTTCGTGGGAGAGTTGTCTACCATTCAGAGACTGGTTTGTTGGTAGAGGAGATCTTGGAGCTGGAGAGTCATTTCTCAAGTATTGATTTCCTTCATGTAAATCGGAAGCATAATACGCTGGAAGATAGCTTAGCCAGACATGCGTCATTGTCCAAGGCTTCTCGTTTGTGGAACTCTCCTTTTCCTTTATGGTTATTGCCTTTACTGATTGATTCTCAGTCTACTGATGCAGCCCAAGAGGCAACTGGTTTTTTCTCTTAG

Coding sequence (CDS)

ATGTTGTGTCGTGGGCGGAACCATTGCCTTGAAAGCAAAATCGGTATGACCTTGGTGCTAAATCGTTTTACTGTCGGTAAGCTCCCCAAGGTTAACACAACCTCCAACTCAGACGTGCACTCATCGGAATGGGAGTGGAATCGATCTCGTGCTCAGTTTAGGGTAGTGGAGAGAACTGGAAAATTGAAGAACGGTAATTTGGATCAATCGTCTATTTCACAAGGAATCAATCCGGGTCACCATGTGACGACGATCAAACTTACGGAAAGCAATTATCTCCCATGGAAATTTCAAATTCTCAAAACATTACAAGGTTATCGACTAGATAACTTTGTTCTTTCGGATGATGAATCTCCAGCAAAATTTTTGCCACAATCTGGAGGTGTAGAAAGTTCTTCTACTTCTATTGAAGAGAATCCCACTCACTCGGCATGGATTCGCCAAGATCGTTTAATCTCCTCTTTGTTACTTGGCTCGATGACAGAAGAAGTTCTTCAAGAAATGCTTGATTGTAGTACTTCTCGAGAAATTTGGAAGAAAATTGAAGATACATATGCGACGAACAATCTGGCTAAAACTATGAGTTTCAAGAATCAGATATTTCAACAAAAGATTATTGTGTATCTACTTTCTGGACTTGGAACGAATTATAATGCTATTGTTTATGTGATTATCGCCAAGTCTAGGGCTCTAACACTTCAAGAAGGAAGCATTAATAAGAAACCAAACTCATCTTCTAATGATCAGAGAACAAATAGTTCTCAATCTAATGCCAATAGAGGAGGTCGAAATCGTGGCTTCAACAACAATAACAAGGGAAATCGCAACTGGAATACCAATAATCGGCCTCAATGTCAACTGTGTGGACGATTTGATCACATTGCCCTACGTTGTTATCTTCGTTTTGATACTACTTTCCACGAGGCTAATGGACAAACTAATGGACAGAATCATGGTTCAAATACCTCAAACTCATATCAATTTTCTGGGCATCAGAATCCTTCAATGCAGGCTCTAATGGTGACACCAATTCTCAATATTGATTCGGGTGCATCCAATCACGTTACTAATGATTTTTCCAATCTATTAGTGAGTACTCCCTGCACGAATGATTCCAGAGTATTGGTTGGTAATGGTTCAGCTGGAATCTGTTCAACATGCCTTAATGGACTGTCCAATAGTTGCCGCGATCTGGAATCGGTGTTTTCCCTAGCTTTCGTCGAGATGCTGAGGGATGGACGACTTGCTATGCTGCTGGGAGCATTTAAACAATATCTGCCACAACATTCAAGTGCCGAGTATATCAGTCAAGGCAGATTGGATAGTAAACTATTTAGAGAATTTCAAGAGGGCTATTCTAGGGCGTTTTACAAAGGAGGCTCAAATCGGTCTTGGGTTGGTGAACTGATGGCGGTTCGGGAAGGGATTAGGCTTGCTGTACGACCGAGTCTTGGATGGGTGGTGGTTCTCTCAGACTCTTTGGAAGCGATCAATCTTCTTCGTGGGAGAGTTGTCTACCATTCAGAGACTGGTTTGTTGGTAGAGGAGATCTTGGAGCTGGAGAGTCATTTCTCAAGTATTGATTTCCTTCATGTAAATCGGAAGCATAATACGCTGGAAGATAGCTTAGCCAGACATGCGTCATTGTCCAAGGCTTCTCGTTTGTGGAACTCTCCTTTTCCTTTATGGTTATTGCCTTTACTGATTGATTCTCAGTCTACTGATGCAGCCCAAGAGGCAACTGGTTTTTTCTCTTAG

Protein sequence

MLCRGRNHCLESKIGMTLVLNRFTVGKLPKVNTTSNSDVHSSEWEWNRSRAQFRVVERTGKLKNGNLDQSSISQGINPGHHVTTIKLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGVESSSTSIEENPTHSAWIRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNNLAKTMSFKNQIFQQKIIVYLLSGLGTNYNAIVYVIIAKSRALTLQEGSINKKPNSSSNDQRTNSSQSNANRGGRNRGFNNNNKGNRNWNTNNRPQCQLCGRFDHIALRCYLRFDTTFHEANGQTNGQNHGSNTSNSYQFSGHQNPSMQALMVTPILNIDSGASNHVTNDFSNLLVSTPCTNDSRVLVGNGSAGICSTCLNGLSNSCRDLESVFSLAFVEMLRDGRLAMLLGAFKQYLPQHSSAEYISQGRLDSKLFREFQEGYSRAFYKGGSNRSWVGELMAVREGIRLAVRPSLGWVVVLSDSLEAINLLRGRVVYHSETGLLVEEILELESHFSSIDFLHVNRKHNTLEDSLARHASLSKASRLWNSPFPLWLLPLLIDSQSTDAAQEATGFFS

Homology

[Close]

BLAST of Moc09g09780 vs. NCBI nr
Match: XP_022154487.1 (uncharacterized protein LOC111021757 [Momordica charantia])

HSP 1 Score: 192.6 bits (488), Expect = 9.7e-45
Identity = 136/391 (34.78%), Postives = 203/391 (51.92%), Query Frame = 0


Query: 73  SQGINPGHHVTTIKLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGVESS 132
           S+ INPG  V+ ++L + N L WKFQI   LQG  L++++ S++++PA+F+ Q+   ESS
Sbjct: 19  SKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFV-QTTEDESS 78

Query: 133 STSIEENPTHSAWIRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNNLAK 192
           S+S+++NP +  WI+QD+LIS+ LLGSM E++L +MLDC ++REIW  +E  +A+  LA+
Sbjct: 79  SSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTLAR 138

Query: 193 TMSFK-------------------------------NQIFQQKIIVYLLSGLGTNYNAIV 252
            M  K                                ++  +  I+++L+GLG  ++AI+
Sbjct: 139 VMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLGPEFDAII 198

Query: 253 YVIIAKSRALTLQE-----------------------GSINKKPNSSSNDQRTNSSQ--- 312
            VI A++   TLQE                        S+N   N SS     + S+   
Sbjct: 199 SVITARNMPQTLQEVCSLLLQQEGRNERNLINSDGSLPSVNLTLNDSSKKNNLHQSKCFN 258

Query: 313 -SNANRGGRNRGFNNNNKGNRNWNTNNRPQCQLCGRFDHIALRCYLRFDTTFHEAN---- 372
              +N   R RG NN +   RNW  NN+PQCQ+CGRF H ALRCY+RF+  F   N    
Sbjct: 259 PHQSNYSQRGRGTNNRSSNRRNWTGNNKPQCQICGRFGHTALRCYMRFERNFLGPNMNPN 318

Query: 373 -----GQTNGQNHGSNTSNSYQFSGHQN---------PS-MQALMVTPILN------IDS 381
                G ++G    + + N++     QN         PS MQALMV    N       DS
Sbjct: 319 TFSPAGFSSGFPLNTPSHNAFSSPATQNGNFSMNSASPSQMQALMVAQDFNRDSNWYRDS 378

[Close]

BLAST of Moc09g09780 vs. NCBI nr
Match: KAA0048297.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 1.2e-34
Identity = 113/375 (30.13%), Postives = 186/375 (49.60%), Query Frame = 0


Query: 70  SSISQGINPGHHVTTIKLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGV 129
           S I+Q    G+ ++ +KL +  +L WKFQIL  L+ Y L+NF+ S+ E P+K+L  +   
Sbjct: 17  SPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLISTESS 76

Query: 130 ESSSTSIEENPTHSAWIRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNN 189
            +S+T    NP +  W RQDRLISS LLGSM+EE+L +ML C +++EIW+ ++  +++  
Sbjct: 77  SASATG-TPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRY 136

Query: 190 LAKTMSFKNQIFQQK-------------------------------IIVYLLSGLGTNYN 249
           LA+ M FKN++   K                                I+Y+L+GLG++Y 
Sbjct: 137 LAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQ 196

Query: 250 AIVYVIIAKSRALTLQEGSINKKPNSSSNDQ--------------------------RTN 309
           +++ VI A++ + ++QE         S N+                           RTN
Sbjct: 197 SMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTN 256

Query: 310 SSQSNANRGGRNRGFNNNNKGNRNWNTN-NRPQCQLCGRFDHIALRCYLRFDTTFHEANG 369
            +  + N     RG   N + NR    N N+PQCQ+C +  + A RC+ R+         
Sbjct: 257 QNNYHNNHSYNQRGGRGNGRSNRGRRGNRNKPQCQICAKLGYSADRCFFRY-------TP 316

Query: 370 QTNGQNHGSNTSNSYQFSGHQNPSMQALMVTPILNI------DSGASNHVTNDFSNLLVS 381
           ++N   +  N+ N+   + + +P M A++    LNI      DSGA+NH+T+  SNL + 
Sbjct: 317 RSNSSGYSPNSHNTSYTNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIG 376

[Close]

BLAST of Moc09g09780 vs. NCBI nr
Match: TYK10642.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 1.2e-34
Identity = 113/375 (30.13%), Postives = 186/375 (49.60%), Query Frame = 0


Query: 70  SSISQGINPGHHVTTIKLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGV 129
           S I+Q    G+ ++ +KL +  +L WKFQIL  L+ Y L+NF+ S+ E P+K+L  +   
Sbjct: 17  SPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLISTESS 76

Query: 130 ESSSTSIEENPTHSAWIRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNN 189
            +S+T    NP +  W RQDRLISS LLGSM+EE+L +ML C +++EIW+ ++  +++  
Sbjct: 77  SASATG-TPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRY 136

Query: 190 LAKTMSFKNQIFQQK-------------------------------IIVYLLSGLGTNYN 249
           LA+ M FKN++   K                                I+Y+L+GLG++Y 
Sbjct: 137 LAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQ 196

Query: 250 AIVYVIIAKSRALTLQEGSINKKPNSSSNDQ--------------------------RTN 309
           +++ VI A++ + ++QE         S N+                           RTN
Sbjct: 197 SMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTN 256

Query: 310 SSQSNANRGGRNRGFNNNNKGNRNWNTN-NRPQCQLCGRFDHIALRCYLRFDTTFHEANG 369
            +  + N     RG   N + NR    N N+PQCQ+C +  + A RC+ R+         
Sbjct: 257 QNNYHNNHSYNQRGGRGNGRSNRGRRGNRNKPQCQICAKLGYSADRCFFRY-------TP 316

Query: 370 QTNGQNHGSNTSNSYQFSGHQNPSMQALMVTPILNI------DSGASNHVTNDFSNLLVS 381
           ++N   +  N+ N+   + + +P M A++    LNI      DSGA+NH+T+  SNL + 
Sbjct: 317 RSNSSGYSPNSHNTSYTNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIG 376

[Close]

BLAST of Moc09g09780 vs. NCBI nr
Match: KAF7814697.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora])

HSP 1 Score: 135.6 bits (340), Expect = 1.4e-27
Identity = 113/375 (30.13%), Postives = 169/375 (45.07%), Query Frame = 0


Query: 81  HVTTIKLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGVESSSTSIEENP 140
           H TTIKLTE N+L WK QI  T+ G+ L  +++ D     KF+P        + + + N 
Sbjct: 30  HATTIKLTEENFLVWKMQITTTINGFNLQKYLIGD-----KFIPDKFATAEDAAAEKINQ 89

Query: 141 THSAWIRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNNLAKTMSFKNQI 200
            +  W+ QD+L+ S L+ SMTEE++ + ++CST++++W+++   Y+TN   K    +NQ+
Sbjct: 90  DYLHWVNQDQLLMSWLISSMTEEMVNKFVECSTTKDLWEQLRTYYSTNTKPKERQLRNQL 149

Query: 201 FQQK-------------------------------IIVYLLSGLGTNYNAIVYVI----- 260
            + K                                +  +  GL   Y + V  I     
Sbjct: 150 RETKKGNSAMNDYLSKIKKITNALASIGASLSTHDHVETIFDGLSEEYESFVTSISLRTE 209

Query: 261 ---IAKSRALTL-QEGSINK-----------------KPNSSSNDQRTNSSQSNANRGGR 320
              +++  AL L QE  + K                   N  S +Q +N S +  N  GR
Sbjct: 210 EYSVSEIEALLLAQEARVEKFKKTVESVSANMTLVDLSKNPPSRNQTSNQSFNRNNGQGR 269

Query: 321 NRGFNNN---NKGNRNWNT--NNRPQCQLCGRFDHIALRCYLRFDTTFHEA--------N 380
               NNN    +G  + +T   NRPQCQ+CG+  HIA+ CY RF+  + EA        N
Sbjct: 270 GNFRNNNFQRGRGRSSISTWQGNRPQCQVCGKMGHIAVNCYNRFNQRYTEASLLQQQIVN 329

[Close]

BLAST of Moc09g09780 vs. NCBI nr
Match: XP_022136882.1 (dr1-associated corepressor homolog isoform X1 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 1.8e-27
Identity = 108/312 (34.62%), Postives = 160/312 (51.28%), Query Frame = 0


Query: 146 IRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNNLAKTMSFKNQI----- 205
           ++QD+LI+S L  SM EE+L EM+ C+T+RE+W+ +E+ Y + NLA+ M  K+++     
Sbjct: 1   MKQDKLITSWLFSSMFEEILGEMIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKK 60

Query: 206 -------FQQKI-------------------IVYLLSGLGTNYNAIVYVIIAKSRALTLQ 265
                  + QK+                   I+++L+GL + + + V VI A+++  TLQ
Sbjct: 61  GNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQ 120

Query: 266 E--------------GSINKK---PNSSSNDQRTNSSQSNANRGGR-----NRGFNNNNK 325
           E               SIN     P+ +   Q  NS+ + +  G R     NR  N+ N 
Sbjct: 121 EVYSLLLSHEGRNERNSINTDGTLPSVNLTQQTKNSNSAQSIDGQRPYMQNNRSKNSGNP 180

Query: 326 G-NRNWNTNNRPQCQLCGRFDHIALRCYLRFDTTFHEANGQTNGQNHGSNTSNS------ 381
              RNWN+NNRPQCQ+ G+F H ALRCYLRF+ TF   NGQ++ Q+  S  SNS      
Sbjct: 181 NFRRNWNSNNRPQCQIYGKFGHTALRCYLRFEKTFLGPNGQSHMQHKFSGGSNSSINSNM 240

[Close]

BLAST of Moc09g09780 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-13
Identity = 95/363 (26.17%), Postives = 153/363 (42.15%), Query Frame = 0


Query: 86  KLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGVESSSTSIEENPTHSAW 145
           KLT +NYL W  Q+     GY L  F+  D  +P    P + G ++       NP ++ W
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFL--DGSTPMP--PATIGTDAVP---RVNPDYTRW 84

Query: 146 IRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNN---------------- 205
            RQD+LI S +LG+++  V   +   +T+ +IW+ +   YA  +                
Sbjct: 85  RRQDKLIYSAILGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRFITRFDQL 144

Query: 206 --LAKTMSFKNQIFQQKIIVYLLSGLGTNYNAIVYVIIAK-----------------SRA 265
             L K M    Q+ +      +L  L  +Y  ++  I AK                 S+ 
Sbjct: 145 ALLGKPMDHDEQVER------VLENLPDDYKPVIDQIAAKDTPPSLTEIHERLINRESKL 204

Query: 266 LTLQEGSINKKPNSSSNDQRTNSSQSNANRGGRNRGFNNNNKGNRNW--------NTNNR 325
           L L    +     +    + TN++++  NRG  NR +NNNN  + +W        + N +
Sbjct: 205 LALNSAEVVPITANVVTHRNTNTNRNQNNRGD-NRNYNNNNNRSNSWQPSSSGSRSDNRQ 264

Query: 326 P-----QCQLCGRFDHIALRCYLRFDTTFHEANGQTNGQNHGSNTSNSYQFSGHQNPSMQ 385
           P     +CQ+C    H A RC        H+    TN Q    +TS    +    N ++ 
Sbjct: 265 PKPYLGRCQICSVQGHSAKRC-----PQLHQFQSTTNQQ---QSTSPFTPWQPRANLAVN 324

Query: 386 ALMVTPILNIDSGASNHVTNDFSNLLVSTPCTNDSRVLVGNGSA-GICSTCLNGLSNSCR 400
           +        +DSGA++H+T+DF+NL    P T    V++ +GS   I  T    L  S R
Sbjct: 325 SPYNANNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSR 365

[Close]

BLAST of Moc09g09780 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.1e-10
Identity = 95/384 (24.74%), Postives = 151/384 (39.32%), Query Frame = 0


Query: 86  KLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGVESSSTSIEENPTHSAW 145
           KLT +NYL W  Q+     GY L  F+      P    P + G +++      NP ++ W
Sbjct: 25  KLTSTNYLMWSRQVHALFDGYELAGFLDGSTTMP----PATIGTDAAP---RVNPDYTRW 84

Query: 146 IRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNNLAKTMSFKNQIFQ--- 205
            RQD+LI S +LG+++  V   +   +T+ +IW+ +   YA  +       + Q+ Q   
Sbjct: 85  KRQDKLIYSAVLGAISMSVQPAVSRATTAAQIWETLRKIYANPSYGHVTQLRTQLKQWTK 144

Query: 206 ----------------------------QKIIVYLLSGLGTNYNAIVYVIIAKSRALTLQ 265
                                        + +  +L  L   Y  ++  I AK    TL 
Sbjct: 145 GTKTIDDYMQGLVTRFDQLALLGKPMDHDEQVERVLENLPEEYKPVIDQIAAKDTPPTLT 204

Query: 266 E---------------GSINKKP-NSSSNDQRTNSSQSNANRGGRNRGFNNNNKGNR--- 325
           E                S    P  +++   R  ++ +N N G RN  ++N N  N    
Sbjct: 205 EIHERLLNHESKILAVSSATVIPITANAVSHRNTTTTNNNNNGNRNNRYDNRNNNNNSKP 264

Query: 326 ------NWNTNNRP------QCQLCGRFDHIALRCYLRFDTTFHEANGQTNGQNHGSNTS 385
                 N++ NN        +CQ+CG   H A RC               +   H  ++ 
Sbjct: 265 WQQSSTNFHPNNNQSKPYLGKCQICGVQGHSAKRC---------------SQLQHFLSSV 324

Query: 386 NSYQ----FSGHQNPSMQALMVTPILN----IDSGASNHVTNDFSNLLVSTPCTNDSRVL 399
           NS Q    F+  Q P     + +P  +    +DSGA++H+T+DF+NL +  P T    V+
Sbjct: 325 NSQQPPSPFTPWQ-PRANLALGSPYSSNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVM 384

[Close]

BLAST of Moc09g09780 vs. ExPASy TrEMBL
Match: A0A6J1DLT9 (uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021757 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 4.7e-45
Identity = 136/391 (34.78%), Postives = 203/391 (51.92%), Query Frame = 0


Query: 73  SQGINPGHHVTTIKLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGVESS 132
           S+ INPG  V+ ++L + N L WKFQI   LQG  L++++ S++++PA+F+ Q+   ESS
Sbjct: 19  SKTINPGSKVSIVRLNDDNXLLWKFQIRTALQGNGLESYIDSNEDTPAQFV-QTTEDESS 78

Query: 133 STSIEENPTHSAWIRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNNLAK 192
           S+S+++NP +  WI+QD+LIS+ LLGSM E++L +MLDC ++REIW  +E  +A+  LA+
Sbjct: 79  SSSLQQNPAYFEWIKQDKLISAWLLGSMNEDILSQMLDCKSAREIWTVLECMFASRTLAR 138

Query: 193 TMSFK-------------------------------NQIFQQKIIVYLLSGLGTNYNAIV 252
            M  K                                ++  +  I+++L+GLG  ++AI+
Sbjct: 139 VMQLKLKLENFKKGNLSLKDYFLKIKNLVDSLAIAGKKLSTEDHIMHILAGLGPEFDAII 198

Query: 253 YVIIAKSRALTLQE-----------------------GSINKKPNSSSNDQRTNSSQ--- 312
            VI A++   TLQE                        S+N   N SS     + S+   
Sbjct: 199 SVITARNMPQTLQEVCSLLLQQEGRNERNLINSDGSLPSVNLTLNDSSKKNNLHQSKCFN 258

Query: 313 -SNANRGGRNRGFNNNNKGNRNWNTNNRPQCQLCGRFDHIALRCYLRFDTTFHEAN---- 372
              +N   R RG NN +   RNW  NN+PQCQ+CGRF H ALRCY+RF+  F   N    
Sbjct: 259 PHQSNYSQRGRGTNNRSSNRRNWTGNNKPQCQICGRFGHTALRCYMRFERNFLGPNMNPN 318

Query: 373 -----GQTNGQNHGSNTSNSYQFSGHQN---------PS-MQALMVTPILN------IDS 381
                G ++G    + + N++     QN         PS MQALMV    N       DS
Sbjct: 319 TFSPAGFSSGFPLNTPSHNAFSSPATQNGNFSMNSASPSQMQALMVAQDFNRDSNWYRDS 378

[Close]

BLAST of Moc09g09780 vs. ExPASy TrEMBL
Match: A0A5A7U233 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00060 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.7e-35
Identity = 113/375 (30.13%), Postives = 186/375 (49.60%), Query Frame = 0


Query: 70  SSISQGINPGHHVTTIKLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGV 129
           S I+Q    G+ ++ +KL +  +L WKFQIL  L+ Y L+NF+ S+ E P+K+L  +   
Sbjct: 17  SPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLISTESS 76

Query: 130 ESSSTSIEENPTHSAWIRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNN 189
            +S+T    NP +  W RQDRLISS LLGSM+EE+L +ML C +++EIW+ ++  +++  
Sbjct: 77  SASATG-TPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRY 136

Query: 190 LAKTMSFKNQIFQQK-------------------------------IIVYLLSGLGTNYN 249
           LA+ M FKN++   K                                I+Y+L+GLG++Y 
Sbjct: 137 LAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQ 196

Query: 250 AIVYVIIAKSRALTLQEGSINKKPNSSSNDQ--------------------------RTN 309
           +++ VI A++ + ++QE         S N+                           RTN
Sbjct: 197 SMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTN 256

Query: 310 SSQSNANRGGRNRGFNNNNKGNRNWNTN-NRPQCQLCGRFDHIALRCYLRFDTTFHEANG 369
            +  + N     RG   N + NR    N N+PQCQ+C +  + A RC+ R+         
Sbjct: 257 QNNYHNNHSYNQRGGRGNGRSNRGRRGNRNKPQCQICAKLGYSADRCFFRY-------TP 316

Query: 370 QTNGQNHGSNTSNSYQFSGHQNPSMQALMVTPILNI------DSGASNHVTNDFSNLLVS 381
           ++N   +  N+ N+   + + +P M A++    LNI      DSGA+NH+T+  SNL + 
Sbjct: 317 RSNSSGYSPNSHNTSYTNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIG 376

[Close]

BLAST of Moc09g09780 vs. ExPASy TrEMBL
Match: A0A5D3CH97 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold25G00040 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 5.7e-35
Identity = 113/375 (30.13%), Postives = 186/375 (49.60%), Query Frame = 0


Query: 70  SSISQGINPGHHVTTIKLTESNYLPWKFQILKTLQGYRLDNFVLSDDESPAKFLPQSGGV 129
           S I+Q    G+ ++ +KL +  +L WKFQIL  L+ Y L+NF+ S+ E P+K+L  +   
Sbjct: 17  SPINQIFGSGNKISLVKLNDDTFLLWKFQILTALEAYDLENFLESESEPPSKYLISTESS 76

Query: 130 ESSSTSIEENPTHSAWIRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNN 189
            +S+T    NP +  W RQDRLISS LLGSM+EE+L +ML C +++EIW+ ++  +++  
Sbjct: 77  SASATG-TPNPAYKVWKRQDRLISSWLLGSMSEEILNQMLHCKSAKEIWETLQGIFSSRY 136

Query: 190 LAKTMSFKNQIFQQK-------------------------------IIVYLLSGLGTNYN 249
           LA+ M FKN++   K                                I+Y+L+GLG++Y 
Sbjct: 137 LAQAMQFKNKLHNIKKGSMPLKEYFLKILQCVDALASINKPVSSDDHILYILAGLGSDYQ 196

Query: 250 AIVYVIIAKSRALTLQEGSINKKPNSSSNDQ--------------------------RTN 309
           +++ VI A++ + ++QE         S N+                           RTN
Sbjct: 197 SMISVISARTDSPSVQEVMSLLLTQESQNESKLISETALPSVNIVTQTTEKGAESYIRTN 256

Query: 310 SSQSNANRGGRNRGFNNNNKGNRNWNTN-NRPQCQLCGRFDHIALRCYLRFDTTFHEANG 369
            +  + N     RG   N + NR    N N+PQCQ+C +  + A RC+ R+         
Sbjct: 257 QNNYHNNHSYNQRGGRGNGRSNRGRRGNRNKPQCQICAKLGYSADRCFFRY-------TP 316

Query: 370 QTNGQNHGSNTSNSYQFSGHQNPSMQALMVTPILNI------DSGASNHVTNDFSNLLVS 381
           ++N   +  N+ N+   + + +P M A++    LNI      DSGA+NH+T+  SNL + 
Sbjct: 317 RSNSSGYSPNSHNTSYTNMNNHPQMSAMVAALDLNIDSNWYPDSGATNHLTHSLSNLSIG 376

[Close]

BLAST of Moc09g09780 vs. ExPASy TrEMBL
Match: A0A6J1C8R2 (dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.9e-28
Identity = 108/311 (34.73%), Postives = 159/311 (51.13%), Query Frame = 0


Query: 146 IRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNNLAKTMSFKNQI----- 205
           ++QD+LI+S L  SM EE+L EM+ C+T+RE+W+ +E+ Y + NLA+ M  K+++     
Sbjct: 1   MKQDKLITSWLFSSMFEEILGEMIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKK 60

Query: 206 -------FQQKI-------------------IVYLLSGLGTNYNAIVYVIIAKSRALTLQ 265
                  + QK+                   I+++L+GL + + + V VI A+++  TLQ
Sbjct: 61  GNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQ 120

Query: 266 E--------------GSINKK---PNSSSNDQRTNSSQSNANRGGR-----NRGFNNNNK 325
           E               SIN     P+ +   Q  NS+ + +  G R     NR  N+ N 
Sbjct: 121 EVYSLLLSHEGRNERNSINTDGTLPSVNLTQQTKNSNSAQSIDGQRPYMQNNRSKNSGNP 180

Query: 326 G-NRNWNTNNRPQCQLCGRFDHIALRCYLRFDTTFHEANGQTNGQNHGSNTSNS------ 380
              RNWN+NNRPQCQ+ G+F H ALRCYLRF+ TF   NGQ++ Q+  S  SNS      
Sbjct: 181 NFRRNWNSNNRPQCQIYGKFGHTALRCYLRFEKTFLGPNGQSHMQHKFSGGSNSSINSNM 240

[Close]

BLAST of Moc09g09780 vs. ExPASy TrEMBL
Match: A0A6J1C6N9 (dr1-associated corepressor homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.9e-28
Identity = 108/312 (34.62%), Postives = 160/312 (51.28%), Query Frame = 0


Query: 146 IRQDRLISSLLLGSMTEEVLQEMLDCSTSREIWKKIEDTYATNNLAKTMSFKNQI----- 205
           ++QD+LI+S L  SM EE+L EM+ C+T+RE+W+ +E+ Y + NLA+ M  K+++     
Sbjct: 1   MKQDKLITSWLFSSMFEEILGEMIHCNTAREVWQILENLYTSRNLARVMQLKSKLENIKK 60

Query: 206 -------FQQKI-------------------IVYLLSGLGTNYNAIVYVIIAKSRALTLQ 265
                  + QK+                   I+++L+GL + + + V VI A+++  TLQ
Sbjct: 61  GNLPLKDYFQKVKALVDSLAAAGKKVTVEDHIMHILTGLRSEFESTVSVISARTQTQTLQ 120

Query: 266 E--------------GSINKK---PNSSSNDQRTNSSQSNANRGGR-----NRGFNNNNK 325
           E               SIN     P+ +   Q  NS+ + +  G R     NR  N+ N 
Sbjct: 121 EVYSLLLSHEGRNERNSINTDGTLPSVNLTQQTKNSNSAQSIDGQRPYMQNNRSKNSGNP 180

Query: 326 G-NRNWNTNNRPQCQLCGRFDHIALRCYLRFDTTFHEANGQTNGQNHGSNTSNS------ 381
              RNWN+NNRPQCQ+ G+F H ALRCYLRF+ TF   NGQ++ Q+  S  SNS      
Sbjct: 181 NFRRNWNSNNRPQCQIYGKFGHTALRCYLRFEKTFLGPNGQSHMQHKFSGGSNSSINSNM 240

The following BLAST results are available for this feature:

BLAST of Moc09g09780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154487.1	9.7e-45	34.78	uncharacterized protein LOC111021757 [Momordica charantia]	[more]
KAA0048297.1	1.2e-34	30.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK10642.1	1.2e-34	30.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAF7814697.1	1.4e-27	30.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Senna tora]	[more]
XP_022136882.1	1.8e-27	34.62	dr1-associated corepressor homolog isoform X1 [Momordica charantia]	[more]

BLAST of Moc09g09780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	1.2e-13	26.17	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.1e-10	24.74	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Moc09g09780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DLT9	4.7e-45	34.78	uncharacterized protein LOC111021757 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A5A7U233	5.7e-35	30.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CH97	5.7e-35	30.13	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A6J1C8R2	8.9e-28	34.73	dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=...	[more]
A0A6J1C6N9	8.9e-28	34.62	dr1-associated corepressor homolog isoform X1 OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of Moc09g09780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 439..553 e-value: 2.4E-9 score: 39.2
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 460..547 e-value: 3.2E-11 score: 43.1
IPR002156	Ribonuclease H domain	PROSITE	PS50879	RNASE_H	coord: 450..549 score: 9.249923
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 145..205 e-value: 1.2E-6 score: 28.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..279
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 81..377
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 81..377
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 447..545 e-value: 8.22858E-9 score: 51.9312
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 464..545

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g09780.1	Moc09g09780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity