Moc09g09660 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g09660
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionFanconi anemia group D2 protein
Locationchr9: 8132409 .. 8133380 (-)
RNA-Seq ExpressionMoc09g09660
SyntenyMoc09g09660
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAGAACTCGATTGTTTTGGTTCAGCGTTGGATTTGGGGCCGCGGCTGCTTCCATTTCGCAATTCGTTTGGAAAGATCTATTGGCCTATCGATCTGCACTTTCCTCTGATGCAAGTTTTGTTTTAACCCAGAATTTGTTTCGTGTTTCTTCCCTTCGACGAAGGTTGGTTTTTATGTTGTTCTTGTTGTTTTTTTCCCTCCCGTTGATACAGATGGAGCGGAATTTTGACGCCCTGGAAGCTAGAATCTCGAATCTGGAGTCAGTTCGGAACCGGAATTCGGTTTCATCTGCTGAGGTATTTCTCTTGTTGTGTTAATAGTGGAGCTTAAACGTGAATACGTAGCTCTTTTTTTGTTTCTTCCATGTGCAATGTGCGTATACCATTTTCATTAGCTCTGGAATTGAACTTTAGATAATGAGATGATCTCTTTTACATGGGTCGATTATTAAGAATACTCGGTGAGTAATGTAAATGTATGTGGAAAACTTCTTGATGTCAGGAGAAACGAGCATTCTTACCTTTCAACATTGGACAAAGATATAGGATCATTGGAAAGATATAGGATCATTGGACCTCCATTTTCCTCTGCTTTGTATCAGTTCTTGCTCTGGTAGATATTAACGGTTTTCATGGAGGATATTAGAAATGTTAAACTTTTCAAAAGGACTTTAGACAATTTGAACACCCGGTGAAAGCGTGAATGTAGAAAAACAAAACTAAATCATCGAGGCAAGGTTCTTTTATCTCCTTTTAATTATTTTTAATTTTTAAGCAATTGAGACCTGTCACTTGAATTGCTGAAGGGCTTACTATTGTTCATTAATGTTTCGTGAAACGTCAATGAAGGGGTTTGGTGATTCTTTAAGTTTCGATAGCAGTTGTTTTAAAGAATTCAATCAGTTTGGCTCCAAGTGGTTCCTAGAATTATATGGGAGAGATGAGGATGGGTGGTTTACTACTGTATAG

mRNA sequence

ATGTTGAGAACTCGATTGTTTTGGTTCAGCGTTGGATTTGGGGCCGCGGCTGCTTCCATTTCGCAATTCGTTTGGAAAGATCTATTGGCCTATCGATCTGCACTTTCCTCTGATGCAAGTTTTGTTTTAACCCAGAATTTGTTTCGTGTTTCTTCCCTTCGACGAAGGTTGGTTTTTATGTTGTTCTTGTTGTTTTTTTCCCTCCCGTTGATACAGATGGAGCGGAATTTTGACGCCCTGGAAGCTAGAATCTCGAATCTGGAGTCAGTTCGGAACCGGAATTCGGTTTCATCTGCTGAGGGGTTTGGTGATTCTTTAAGTTTCGATAGCAGTTGTTTTAAAGAATTCAATCAGTTTGGCTCCAAGTGGTTCCTAGAATTATATGGGAGAGATGAGGATGGGTGGTTTACTACTGTATAG

Coding sequence (CDS)

ATGTTGAGAACTCGATTGTTTTGGTTCAGCGTTGGATTTGGGGCCGCGGCTGCTTCCATTTCGCAATTCGTTTGGAAAGATCTATTGGCCTATCGATCTGCACTTTCCTCTGATGCAAGTTTTGTTTTAACCCAGAATTTGTTTCGTGTTTCTTCCCTTCGACGAAGGTTGGTTTTTATGTTGTTCTTGTTGTTTTTTTCCCTCCCGTTGATACAGATGGAGCGGAATTTTGACGCCCTGGAAGCTAGAATCTCGAATCTGGAGTCAGTTCGGAACCGGAATTCGGTTTCATCTGCTGAGGGGTTTGGTGATTCTTTAAGTTTCGATAGCAGTTGTTTTAAAGAATTCAATCAGTTTGGCTCCAAGTGGTTCCTAGAATTATATGGGAGAGATGAGGATGGGTGGTTTACTACTGTATAG

Protein sequence

MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFMLFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAEGFGDSLSFDSSCFKEFNQFGSKWFLELYGRDEDGWFTTV
Homology
[Close]
BLAST of Moc09g09660 vs. NCBI nr
Match: KAG7014563.1 (hypothetical protein SDJN02_24741, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-21
Identity = 71/105 (67.62%), Postives = 80/105 (76.19%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNL---FRVSSLRRRL 60
           MLRTRLFWFSVGF A +ASISQFVW+DLLA+R ALSSDASFVL       F      + +
Sbjct: 1   MLRTRLFWFSVGFAATSASISQFVWRDLLAHRCALSSDASFVLILKFSCSFTFPGGFQIV 60

Query: 61  VFMLFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAEGF 103
           VF +   FF L LIQ+ERNFDALEARISNLESVRNR+S+ SAE F
Sbjct: 61  VFDVVGCFF-LSLIQIERNFDALEARISNLESVRNRDSIPSAEVF 104

[Close]
BLAST of Moc09g09660 vs. NCBI nr
Match: XP_022143614.1 (uncharacterized protein LOC111013471 isoform X1 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 2.0e-20
Identity = 67/104 (64.42%), Postives = 67/104 (64.42%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
           MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSD                      
Sbjct: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSD---------------------- 60

Query: 61  LFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAEGFGD 105
                       MERNFDALEARISNLESVRNRNSVSSAE   D
Sbjct: 61  ------------MERNFDALEARISNLESVRNRNSVSSAEQAND 70

[Close]
BLAST of Moc09g09660 vs. NCBI nr
Match: XP_022143615.1 (uncharacterized protein LOC111013471 isoform X2 [Momordica charantia])

HSP 1 Score: 109.4 bits (272), Expect = 2.6e-20
Identity = 66/100 (66.00%), Postives = 66/100 (66.00%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
           MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSD                      
Sbjct: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSD---------------------- 60

Query: 61  LFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAE 101
                       MERNFDALEARISNLESVRNRNSVSSAE
Sbjct: 61  ------------MERNFDALEARISNLESVRNRNSVSSAE 66

[Close]
BLAST of Moc09g09660 vs. NCBI nr
Match: KGN44712.1 (hypothetical protein Csa_016169 [Cucumis sativus])

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 61/101 (60.40%), Postives = 64/101 (63.37%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
           MLRTRLFWFS+GF   AASIS FVW+DLLAYR ALSSDASF                   
Sbjct: 1   MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASF------------------- 60

Query: 61  LFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAEG 102
                       MER+FDALEARISNLES RNRNSVSSAEG
Sbjct: 61  ------------MERSFDALEARISNLESARNRNSVSSAEG 70

[Close]
BLAST of Moc09g09660 vs. NCBI nr
Match: XP_008447214.1 (PREDICTED: uncharacterized protein LOC103489712 isoform X2 [Cucumis melo] >XP_008447215.1 PREDICTED: uncharacterized protein LOC103489712 isoform X2 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 5.9e-17
Identity = 59/104 (56.73%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
           MLRTRLFWFS+GF   AASISQFVW+DLLA+RSAL SD                      
Sbjct: 1   MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---------------------- 60

Query: 61  LFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAEGFGD 105
                       MERNFDALEARISNLESVRNRNS+SSAE   D
Sbjct: 61  ------------MERNFDALEARISNLESVRNRNSISSAEQAND 70

[Close]
BLAST of Moc09g09660 vs. ExPASy TrEMBL
Match: A0A6J1CPU7 (uncharacterized protein LOC111013471 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111013471 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 9.5e-21
Identity = 67/104 (64.42%), Postives = 67/104 (64.42%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
           MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSD                      
Sbjct: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSD---------------------- 60

Query: 61  LFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAEGFGD 105
                       MERNFDALEARISNLESVRNRNSVSSAE   D
Sbjct: 61  ------------MERNFDALEARISNLESVRNRNSVSSAEQAND 70

[Close]
BLAST of Moc09g09660 vs. ExPASy TrEMBL
Match: A0A6J1CP96 (uncharacterized protein LOC111013471 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111013471 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 66/100 (66.00%), Postives = 66/100 (66.00%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
           MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSD                      
Sbjct: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSD---------------------- 60

Query: 61  LFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAE 101
                       MERNFDALEARISNLESVRNRNSVSSAE
Sbjct: 61  ------------MERNFDALEARISNLESVRNRNSVSSAE 66

[Close]
BLAST of Moc09g09660 vs. ExPASy TrEMBL
Match: A0A0A0K8L3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 8.9e-19
Identity = 61/101 (60.40%), Postives = 64/101 (63.37%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
           MLRTRLFWFS+GF   AASIS FVW+DLLAYR ALSSDASF                   
Sbjct: 1   MLRTRLFWFSLGFATTAASISHFVWRDLLAYRCALSSDASF------------------- 60

Query: 61  LFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAEG 102
                       MER+FDALEARISNLES RNRNSVSSAEG
Sbjct: 61  ------------MERSFDALEARISNLESARNRNSVSSAEG 70

[Close]
BLAST of Moc09g09660 vs. ExPASy TrEMBL
Match: A0A1S3BGX2 (uncharacterized protein LOC103489712 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489712 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.9e-17
Identity = 59/104 (56.73%), Postives = 63/104 (60.58%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
           MLRTRLFWFS+GF   AASISQFVW+DLLA+RSAL SD                      
Sbjct: 1   MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---------------------- 60

Query: 61  LFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAEGFGD 105
                       MERNFDALEARISNLESVRNRNS+SSAE   D
Sbjct: 61  ------------MERNFDALEARISNLESVRNRNSISSAEQAND 70

[Close]
BLAST of Moc09g09660 vs. ExPASy TrEMBL
Match: A0A1S3BGW3 (uncharacterized protein LOC103489712 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489712 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 3.7e-17
Identity = 58/100 (58.00%), Postives = 62/100 (62.00%), Query Frame = 0 

Query: 1   MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
           MLRTRLFWFS+GF   AASISQFVW+DLLA+RSAL SD                      
Sbjct: 1   MLRTRLFWFSIGFATTAASISQFVWRDLLAHRSALLSD---------------------- 60

Query: 61  LFLLFFSLPLIQMERNFDALEARISNLESVRNRNSVSSAE 101
                       MERNFDALEARISNLESVRNRNS+SSAE
Sbjct: 61  ------------MERNFDALEARISNLESVRNRNSISSAE 66

[Close]
BLAST of Moc09g09660 vs. TAIR 10
Match: AT3G07568.1 (unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 50.4 bits (119), Expect = 1.3e-06
Identity = 32/89 (35.96%), Postives = 39/89 (43.82%), Query Frame = 0 

Query: 1  MLRTRLFWFSVGFGAAAASISQFVWKDLLAYRSALSSDASFVLTQNLFRVSSLRRRLVFM 60
          MLRTRL WF++GF     SI+  VW+DL A R A+SSD                      
Sbjct: 1  MLRTRLLWFTLGFSVTGGSIAHIVWRDLYAERFAISSD---------------------- 55

Query: 61 LFLLFFSLPLIQMERNFDALEARISNLES 90
                      M+  F ALE R+S LES
Sbjct: 61 ------------MKEKFSALEGRVSGLES 55

The following BLAST results are available for this feature:
BLAST of Moc09g09660 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7014563.11.4e-2167.62hypothetical protein SDJN02_24741, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022143614.12.0e-2064.42uncharacterized protein LOC111013471 isoform X1 [Momordica charantia][more]
XP_022143615.12.6e-2066.00uncharacterized protein LOC111013471 isoform X2 [Momordica charantia][more]
KGN44712.11.8e-1860.40hypothetical protein Csa_016169 [Cucumis sativus][more]
XP_008447214.15.9e-1756.73PREDICTED: uncharacterized protein LOC103489712 isoform X2 [Cucumis melo] >XP_00... [more]
BLAST of Moc09g09660 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g09660 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CPU79.5e-2164.42uncharacterized protein LOC111013471 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CP961.2e-2066.00uncharacterized protein LOC111013471 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A0A0K8L38.9e-1960.40Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G374540 PE=4 SV=1[more]
A0A1S3BGX22.9e-1756.73uncharacterized protein LOC103489712 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BGW33.7e-1758.00uncharacterized protein LOC103489712 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
BLAST of Moc09g09660 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G07568.11.3e-0635.96unknown protein; Has 9 Blast hits to 9 proteins in 5 species: Archae - 0; Bacter... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 70..90
NoneNo IPR availablePANTHERPTHR34970:SF5SUBFAMILY NOT NAMEDcoord: 1..40
coord: 67..94
NoneNo IPR availablePANTHERPTHR34970ABC TRANSPORTER A FAMILY PROTEINcoord: 1..40
coord: 67..94

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g09660.1Moc09g09660.1mRNA