Moc09g09040 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g09040
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ty1-copia retrotransposon protein
Location	chr9: 7468675 .. 7469393 (+)
RNA-Seq Expression	Moc09g09040
Synteny	Moc09g09040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCAACTATTTGAAAGCAAAACTCCATCTACCCATGGCTGCTACCCGATCTGGAAAGGTCCTGCCAGACTTGTCAAATTGGAACCACACGACGGATCCAACTACTGCCAGTGGTCACAGAAGTTACTAATTTTCTTTGAGCAGTTGGAGATCGACTACATTTTCACTACCAAGGACGATGCAGGTAGGAGAAAACACGTTATCGGTAAATGACTGCAATTTCAAATGTCGGACGACAAATCAGTGATGGATCAGGTTCATCAATATGAGAACCTAGTGGCAAGTGTGTTGTCTGAAGGCATGGACATGTGCGAGATTCTTCAGGCCAATGTATTGCTCGAGAAATTTCCTCCTTCCTGGAGTGATTATCGCAACCGCTTGAAATATAAGAAGAAGGACCTGACTCTGCAAGAGCTTATCAGTCACGTACGGATGAAGCCAACAAGCTAAAGGATAAGCTCTCTTCTCAATTTCTAAATTCAGTTAAAGCAAATTTAGTTGAATCTTCTAGTGCTTCCAATGACAGGTTCCAAAACAAGGGGAAGCAAATTTCAAGGGATAGAGCTCAAAAGAACAAAGGTCTTCAACCCAAAAATACTGGTGGAAGAACCGAGAAATTGAAACTGGAAAACCCGGGCACAAATCCTATCAGTGCACCCAGAGGAAAGATAGGAAAGATCAAAGGACTGCTCCACAAGCCAACCTTACAGAGATAG

mRNA sequence

ATGTCCCAACTATTTGAAAGCAAAACTCCATCTACCCATGGCTGCTACCCGATCTGGAAAGGTCCTGCCAGACTTGTCAAATTGGAACCACACGACGGATCCAACTACTGCCAGTGGTCACAGAAGTTACTAATTTTCTTTGAGCAGTTGGAGATCGACTACATTTTCACTACCAAGGACGATGCAGAAGAAGGACCTGACTCTGCAAGAGCTTATCAGTCACGTACGGATGAAGCCAACAAGCTAAAGGATAAGCTCTCTTCTCAATTTCTAAATTCAGTTAAAGCAAATTTAGTTGAATCTTCTAGTGCTTCCAATGACAGGTTCCAAAACAAGGGGAAGCAAATTTCAAGGGATAGAGCTCAAAAGAACAAAGGTCTTCAACCCAAAAATACTGGTGGAAGAACCGAGAAATTGAAACTGGAAAACCCGGGCACAAATCCTATCAGTGCACCCAGAGGAAAGATAGGAAAGATCAAAGGACTGCTCCACAAGCCAACCTTACAGAGATAG

Coding sequence (CDS)

ATGTCCCAACTATTTGAAAGCAAAACTCCATCTACCCATGGCTGCTACCCGATCTGGAAAGGTCCTGCCAGACTTGTCAAATTGGAACCACACGACGGATCCAACTACTGCCAGTGGTCACAGAAGTTACTAATTTTCTTTGAGCAGTTGGAGATCGACTACATTTTCACTACCAAGGACGATGCAGAAGAAGGACCTGACTCTGCAAGAGCTTATCAGTCACGTACGGATGAAGCCAACAAGCTAAAGGATAAGCTCTCTTCTCAATTTCTAAATTCAGTTAAAGCAAATTTAGTTGAATCTTCTAGTGCTTCCAATGACAGGTTCCAAAACAAGGGGAAGCAAATTTCAAGGGATAGAGCTCAAAAGAACAAAGGTCTTCAACCCAAAAATACTGGTGGAAGAACCGAGAAATTGAAACTGGAAAACCCGGGCACAAATCCTATCAGTGCACCCAGAGGAAAGATAGGAAAGATCAAAGGACTGCTCCACAAGCCAACCTTACAGAGATAG

Protein sequence

MSQLFESKTPSTHGCYPIWKGPARLVKLEPHDGSNYCQWSQKLLIFFEQLEIDYIFTTKDDAEEGPDSARAYQSRTDEANKLKDKLSSQFLNSVKANLVESSSASNDRFQNKGKQISRDRAQKNKGLQPKNTGGRTEKLKLENPGTNPISAPRGKIGKIKGLLHKPTLQR

Homology

[Close]

BLAST of Moc09g09040 vs. NCBI nr
Match: XP_022156023.1 (uncharacterized protein LOC111022991 [Momordica charantia])

HSP 1 Score: 96.7 bits (239), Expect = 2.1e-16
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 76  TDEANKLKDKLSSQFLNSVKANLVESSSASNDRFQNKGKQISRDRAQKNKGLQPKNTGGR 135
           T+EAN+LKDKLSSQ LNSVK NLVESSSAS DRF+ KGK I+RDRAQKNKGL+PKN GGR
Sbjct: 95  TEEANRLKDKLSSQSLNSVKVNLVESSSASKDRFKRKGKPIARDRAQKNKGLRPKNIGGR 154

Query: 136 TEKLKL-----ENPG 146
            EK KL     E PG
Sbjct: 155 MEKXKLVCYVCEKPG 169

[Close]

BLAST of Moc09g09040 vs. NCBI nr
Match: XP_022152111.1 (uncharacterized protein LOC111019900 [Momordica charantia])

HSP 1 Score: 91.7 bits (226), Expect = 6.7e-15
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 75  RTDEANKLKDKLSSQFLNSVKANLVESSSASNDRFQNKGKQISRDRAQKNKGLQPKNTGG 134
           RT+EAN+LKDKL  Q LNSVKANLVESSSAS D F+NKGKQI++D+A+KNKGL+PKNT G
Sbjct: 258 RTEEANRLKDKLFFQSLNSVKANLVESSSASKDGFKNKGKQIAKDKAKKNKGLKPKNTCG 317

Query: 135 RTEKLKL 142
           R EK KL
Sbjct: 318 RIEKSKL 324

[Close]

BLAST of Moc09g09040 vs. NCBI nr
Match: XP_022157709.1 (uncharacterized protein LOC111024362 [Momordica charantia])

HSP 1 Score: 83.2 bits (204), Expect = 2.4e-12
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 75  RTDEANKLKDKLSSQFLNSVKANLVESSSASNDRFQNKGKQISRDRAQKNKGLQPKNTGG 134
           RT+EAN+ KDKLSSQ LNSVKANLVESSSA  DRF+NKGKQ   DR Q  KG Q KN GG
Sbjct: 191 RTEEANRQKDKLSSQSLNSVKANLVESSSAFKDRFKNKGKQGFNDRVQNQKGFQIKNAGG 250

Query: 135 RTEKLKL 142
           + EK KL
Sbjct: 251 KIEKAKL 257

[Close]

BLAST of Moc09g09040 vs. NCBI nr
Match: XP_022150382.1 (uncharacterized protein LOC111018559 [Momordica charantia])

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-10
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 75  RTDEANKLKDKLSSQFLNSVKANLVESSSASNDRFQNKGKQISRDRAQKNKGLQPKNTGG 134
           R ++ANK  DKLSSQ +NSVKANL+ESS  + DRF+ KGKQ++++R QKNKG Q K+  G
Sbjct: 224 RIEKANKQNDKLSSQLVNSVKANLIESSGVNKDRFKGKGKQVAQERVQKNKGFQFKSPDG 283

Query: 135 RTEKLK 141
           R EK+K
Sbjct: 284 RIEKIK 289

[Close]

BLAST of Moc09g09040 vs. NCBI nr
Match: XP_022150382.1 (uncharacterized protein LOC111018559 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 4.1e-04
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 27 KLEPHDGSNYCQWSQKLLIFFEQLEIDYIFTT 59
          KLE  DGSNY +WSQKL IFFEQLE+DY+ TT
Sbjct: 15 KLESLDGSNYHRWSQKLFIFFEQLEVDYVLTT 46

HSP 2 Score: 67.8 bits (164), Expect = 1.0e-07
Identity = 62/192 (32.29%), Postives = 80/192 (41.67%), Query Frame = 0


Query: 25  LVKLEPHDGSNYCQWSQKLLIFFEQLEIDYIFTT---------------KDDAEEGPDSA 84
           L KLEP DG+NY +WSQKLLIFFEQLE+DY+ TT                 ++  GP + 
Sbjct: 13  LSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPATTSTSSDPESSTGPSTT 72

Query: 85  RAYQSR------------------------------------------------------ 142
            A Q +                                                      
Sbjct: 73  VADQIKKDQVIDPENMQRITRPHEDVRNTSSKCPAGKVSPSWNDYRNHLKYKKKDLKLQE 132

[Close]

BLAST of Moc09g09040 vs. ExPASy TrEMBL
Match: A0A6J1DPG7 (uncharacterized protein LOC111022991 OS=Momordica charantia OX=3673 GN=LOC111022991 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.0e-16
Identity = 56/75 (74.67%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 76  TDEANKLKDKLSSQFLNSVKANLVESSSASNDRFQNKGKQISRDRAQKNKGLQPKNTGGR 135
           T+EAN+LKDKLSSQ LNSVK NLVESSSAS DRF+ KGK I+RDRAQKNKGL+PKN GGR
Sbjct: 95  TEEANRLKDKLSSQSLNSVKVNLVESSSASKDRFKRKGKPIARDRAQKNKGLRPKNIGGR 154

Query: 136 TEKLKL-----ENPG 146
            EK KL     E PG
Sbjct: 155 MEKXKLVCYVCEKPG 169

[Close]

BLAST of Moc09g09040 vs. ExPASy TrEMBL
Match: A0A6J1DGM8 (uncharacterized protein LOC111019900 OS=Momordica charantia OX=3673 GN=LOC111019900 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0


Query: 75  RTDEANKLKDKLSSQFLNSVKANLVESSSASNDRFQNKGKQISRDRAQKNKGLQPKNTGG 134
           RT+EAN+LKDKL  Q LNSVKANLVESSSAS D F+NKGKQI++D+A+KNKGL+PKNT G
Sbjct: 258 RTEEANRLKDKLFFQSLNSVKANLVESSSASKDGFKNKGKQIAKDKAKKNKGLKPKNTCG 317

Query: 135 RTEKLKL 142
           R EK KL
Sbjct: 318 RIEKSKL 324

[Close]

BLAST of Moc09g09040 vs. ExPASy TrEMBL
Match: A0A6J1DXB7 (uncharacterized protein LOC111024362 OS=Momordica charantia OX=3673 GN=LOC111024362 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 75  RTDEANKLKDKLSSQFLNSVKANLVESSSASNDRFQNKGKQISRDRAQKNKGLQPKNTGG 134
           RT+EAN+ KDKLSSQ LNSVKANLVESSSA  DRF+NKGKQ   DR Q  KG Q KN GG
Sbjct: 191 RTEEANRQKDKLSSQSLNSVKANLVESSSAFKDRFKNKGKQGFNDRVQNQKGFQIKNAGG 250

Query: 135 RTEKLKL 142
           + EK KL
Sbjct: 251 KIEKAKL 257

[Close]

BLAST of Moc09g09040 vs. ExPASy TrEMBL
Match: A0A6J1DAK7 (uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018559 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.4e-10
Identity = 40/66 (60.61%), Postives = 52/66 (78.79%), Query Frame = 0


Query: 75  RTDEANKLKDKLSSQFLNSVKANLVESSSASNDRFQNKGKQISRDRAQKNKGLQPKNTGG 134
           R ++ANK  DKLSSQ +NSVKANL+ESS  + DRF+ KGKQ++++R QKNKG Q K+  G
Sbjct: 224 RIEKANKQNDKLSSQLVNSVKANLIESSGVNKDRFKGKGKQVAQERVQKNKGFQFKSPDG 283

Query: 135 RTEKLK 141
           R EK+K
Sbjct: 284 RIEKIK 289

[Close]

BLAST of Moc09g09040 vs. ExPASy TrEMBL
Match: A0A6J1DAK7 (uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018559 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.0e-04
Identity = 24/32 (75.00%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 27 KLEPHDGSNYCQWSQKLLIFFEQLEIDYIFTT 59
          KLE  DGSNY +WSQKL IFFEQLE+DY+ TT
Sbjct: 15 KLESLDGSNYHRWSQKLFIFFEQLEVDYVLTT 46

HSP 2 Score: 67.8 bits (164), Expect = 5.0e-08
Identity = 62/192 (32.29%), Postives = 80/192 (41.67%), Query Frame = 0


Query: 25  LVKLEPHDGSNYCQWSQKLLIFFEQLEIDYIFTT---------------KDDAEEGPDSA 84
           L KLEP DG+NY +WSQKLLIFFEQLE+DY+ TT                 ++  GP + 
Sbjct: 13  LSKLEPLDGTNYRRWSQKLLIFFEQLEVDYVLTTDLPTFDPPATTSTSSDPESSTGPSTT 72

Query: 85  RAYQSR------------------------------------------------------ 142
            A Q +                                                      
Sbjct: 73  VADQIKKDQVIDPENMQRITRPHEDVRNTSSKCPAGKVSPSWNDYRNHLKYKKKDLKLQE 132

The following BLAST results are available for this feature:

BLAST of Moc09g09040 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156023.1	2.1e-16	74.67	uncharacterized protein LOC111022991 [Momordica charantia]	[more]
XP_022152111.1	6.7e-15	76.12	uncharacterized protein LOC111019900 [Momordica charantia]	[more]
XP_022157709.1	2.4e-12	71.64	uncharacterized protein LOC111024362 [Momordica charantia]	[more]
XP_022150382.1	5.0e-10	60.61	uncharacterized protein LOC111018559 [Momordica charantia]	[more]
XP_022150382.1	4.1e-04	75.00	uncharacterized protein LOC111018559 [Momordica charantia]	[more]

BLAST of Moc09g09040 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g09040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DPG7	1.0e-16	74.67	uncharacterized protein LOC111022991 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DGM8	3.3e-15	76.12	uncharacterized protein LOC111019900 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DXB7	1.2e-12	71.64	uncharacterized protein LOC111024362 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DAK7	2.4e-10	60.61	uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DAK7	2.0e-04	75.00	uncharacterized protein LOC111018559 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Moc09g09040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g09040.1	Moc09g09040.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding