Moc09g09020 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc09g09020
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrotrans_gag domain-containing protein
Location	chr9: 7449236 .. 7449928 (+)
RNA-Seq Expression	Moc09g09020
Synteny	Moc09g09020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAATCCGAGATCCGCAAAAAGTTAAAGCTCCAGAAGCCGAAGATGTTGAAGAGTCGACAAACCATCCACCAAATCAAAGCAAATTGAAGATGGGAGGAAACGACAAGCCGCGAGATGATGTTTTCAATCGACTAGGTCCAGCGACCATGCAGCAACAGAAGTTTGTGGCGTGCATCGGGAGCAAAAGTGACCAGGATGGCAGAGTAGATCTTAAACACACCTTTATTGACAAAAGATTGTAGCATTGTAGACAGGAACGGACTGAGAAGTCGCAGAAGCCCAAAGAAAAACGAAAATACAAAGGGTGTGACCAAGAAAAGATCGTAGATCAGGCGGACTAAACGTTCACGGAGGAAATTATGAAGGAAAAAGTCCCACCGAAGTTCTAACTTCCAGCCATCAAACAATACAATGGTTCGACAAATCCTATCGATCACCTCGACGCATATAGAAAATGGATGGACATTTACGGGGTGACAGAATTCATCAGGTGCAGGGTGTTTTCCTTCACATTGACTAGTTCAGCCCGCATATGGTTTCAACAATTGAAGAGGAAGTCAATCTTCTCCTTCAAAGAACTTGCAAGCGCCTTCGTCATACAGTTCGTTGGAGGGCGGAACAGAAACCGACCCATGGCATGTCTTCTCACCATAAAACAGAAGTCAACACTTAAAGAATACGTGGCTTGA

mRNA sequence

ATGCTAATCCGAGATCCGCAAAAAGTTAAAGCTCCAGAAGCCGAAGATGTTGAAGAGTCGACAAACCATCCACCAAATCAAAGCAAATTGAAGATGGGAGGAAACGACAAGCCGCGAGATGATGTTTTCAATCGACTAGGTCCAGCGACCATGCAGCAACAGAAGTTTGTGGCGTGCATCGGGAGCAAAAGTGACCAGGATGGCAGAGTAGATCTTAAACACACCTTTATTGACAAAAGATTGGTGTTTTCCTTCACATTGACTAGTTCAGCCCGCATATGGTTTCAACAATTGAAGAGGAAGTCAATCTTCTCCTTCAAAGAACTTGCAAGCGCCTTCGTCATACAGTTCGTTGGAGGGCGGAACAGAAACCGACCCATGGCATGTCTTCTCACCATAAAACAGAAGTCAACACTTAAAGAATACGTGGCTTGA

Coding sequence (CDS)

ATGCTAATCCGAGATCCGCAAAAAGTTAAAGCTCCAGAAGCCGAAGATGTTGAAGAGTCGACAAACCATCCACCAAATCAAAGCAAATTGAAGATGGGAGGAAACGACAAGCCGCGAGATGATGTTTTCAATCGACTAGGTCCAGCGACCATGCAGCAACAGAAGTTTGTGGCGTGCATCGGGAGCAAAAGTGACCAGGATGGCAGAGTAGATCTTAAACACACCTTTATTGACAAAAGATTGGTGTTTTCCTTCACATTGACTAGTTCAGCCCGCATATGGTTTCAACAATTGAAGAGGAAGTCAATCTTCTCCTTCAAAGAACTTGCAAGCGCCTTCGTCATACAGTTCGTTGGAGGGCGGAACAGAAACCGACCCATGGCATGTCTTCTCACCATAAAACAGAAGTCAACACTTAAAGAATACGTGGCTTGA

Protein sequence

MLIRDPQKVKAPEAEDVEESTNHPPNQSKLKMGGNDKPRDDVFNRLGPATMQQQKFVACIGSKSDQDGRVDLKHTFIDKRLVFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKSTLKEYVA

Homology

[Close]

BLAST of Moc09g09020 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-16
Identity = 51/65 (78.46%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKST--L 141
           VFSFTLT S RIWFQQLKRKSI SFKELA AFV QF GG NR+RP+A LLTIKQK+T  L
Sbjct: 47  VFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESL 106

Query: 142 KEYVA 145
           K+YVA
Sbjct: 107 KDYVA 111

[Close]

BLAST of Moc09g09020 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 1.7e-14
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKST--L 141
           VFSFTLT SAR WF+QLKR SI SFKELA AFV QFVGGR +++P+  LLTIKQK+T  L
Sbjct: 47  VFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESL 106

Query: 142 KEYVA 145
           KEYVA
Sbjct: 107 KEYVA 111

[Close]

BLAST of Moc09g09020 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 4.1e-13
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKST--L 141
           VFS TL+ SAR+WF+QLKR SI SFK LA AFV QF+GGR+R+RP+A LLTIKQ++T  L
Sbjct: 51  VFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESL 110

Query: 142 KEYVA 145
            +YVA
Sbjct: 111 HDYVA 115

[Close]

BLAST of Moc09g09020 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 85.1 bits (209), Expect = 5.3e-13
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKST--L 141
           VFS TL  SARIWF+QLKR SI SFK LA AFV QFVGGR R+RP+A LLTIKQ++T  L
Sbjct: 231 VFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESL 290

Query: 142 KEYVA 145
           ++YVA
Sbjct: 291 RDYVA 295

[Close]

BLAST of Moc09g09020 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 7.7e-12
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKS--TL 141
           VFS TL  SARIWF+QLKR SI SFK LA AF+ QFVGGR R+RP+A LLTIKQ++  +L
Sbjct: 136 VFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAESL 195

Query: 142 KEYVA 145
            +YVA
Sbjct: 196 HDYVA 200

[Close]

BLAST of Moc09g09020 vs. ExPASy TrEMBL
Match: A0A6J1D3B7 (uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016619 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 51/65 (78.46%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKST--L 141
           VFSFTLT S RIWFQQLKRKSI SFKELA AFV QF GG NR+RP+A LLTIKQK+T  L
Sbjct: 47  VFSFTLTGSTRIWFQQLKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESL 106

Query: 142 KEYVA 145
           K+YVA
Sbjct: 107 KDYVA 111

[Close]

BLAST of Moc09g09020 vs. ExPASy TrEMBL
Match: A0A6J1DZ49 (uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024851 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 8.0e-15
Identity = 48/65 (73.85%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKST--L 141
           VFSFTLT SAR WF+QLKR SI SFKELA AFV QFVGGR +++P+  LLTIKQK+T  L
Sbjct: 47  VFSFTLTGSARNWFRQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESL 106

Query: 142 KEYVA 145
           KEYVA
Sbjct: 107 KEYVA 111

[Close]

BLAST of Moc09g09020 vs. ExPASy TrEMBL
Match: A0A6J1D7D2 (uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018307 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-13
Identity = 44/65 (67.69%), Postives = 54/65 (83.08%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKST--L 141
           VFS TL+ SAR+WF+QLKR SI SFK LA AFV QF+GGR+R+RP+A LLTIKQ++T  L
Sbjct: 51  VFSTTLSGSARVWFRQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESL 110

Query: 142 KEYVA 145
            +YVA
Sbjct: 111 HDYVA 115

[Close]

BLAST of Moc09g09020 vs. ExPASy TrEMBL
Match: A0A6J1DWY0 (uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025293 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 2.6e-13
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKST--L 141
           VFS TL  SARIWF+QLKR SI SFK LA AFV QFVGGR R+RP+A LLTIKQ++T  L
Sbjct: 231 VFSTTLNGSARIWFRQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESL 290

Query: 142 KEYVA 145
           ++YVA
Sbjct: 291 RDYVA 295

[Close]

BLAST of Moc09g09020 vs. ExPASy TrEMBL
Match: A0A6J1E1E7 (uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025548 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.7e-12
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 0


Query: 82  VFSFTLTSSARIWFQQLKRKSIFSFKELASAFVIQFVGGRNRNRPMACLLTIKQKS--TL 141
           VFS TL  SARIWF+QLKR SI SFK LA AF+ QFVGGR R+RP+A LLTIKQ++  +L
Sbjct: 136 VFSTTLNGSARIWFRQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAESL 195

Query: 142 KEYVA 145
            +YVA
Sbjct: 196 HDYVA 200

The following BLAST results are available for this feature:

BLAST of Moc09g09020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022147761.1	3.0e-16	78.46	uncharacterized protein LOC111016619 [Momordica charantia]	[more]
XP_022158344.1	1.7e-14	73.85	uncharacterized protein LOC111024851 [Momordica charantia]	[more]
XP_022150035.1	4.1e-13	67.69	uncharacterized protein LOC111018307 [Momordica charantia]	[more]
XP_022158830.1	5.3e-13	70.77	uncharacterized protein LOC111025293 [Momordica charantia]	[more]
XP_022159109.1	7.7e-12	67.69	uncharacterized protein LOC111025548 [Momordica charantia]	[more]

BLAST of Moc09g09020 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc09g09020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D3B7	1.5e-16	78.46	uncharacterized protein LOC111016619 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DZ49	8.0e-15	73.85	uncharacterized protein LOC111024851 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D7D2	2.0e-13	67.69	uncharacterized protein LOC111018307 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DWY0	2.6e-13	70.77	uncharacterized protein LOC111025293 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1E1E7	3.7e-12	67.69	uncharacterized protein LOC111025548 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Moc09g09020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 82..143 e-value: 1.0E-8 score: 35.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc09g09020.1	Moc09g09020.1	mRNA