Moc09g07800 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g07800
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRibonuclease H
Locationchr9: 6230800 .. 6234705 (-)
RNA-Seq ExpressionMoc09g07800
SyntenyMoc09g07800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCTGACGGAGTAGAGCATTACGAGCCTACGGCAAATGAGGAAGAGCTGCTCCTAAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCGGGGCAGAATGGCCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCGAACCCATGTGGGTGCCCTTGAAATAGTATTGAAGAGATGTAGTAAAAAAAGATACAACATATGTGATAACAGAATATATAGTAAATTTGAATTTTTTTAGCGAAAATTTAGAATTGAAATATATAGTTAAAAGATAAAATGAAAACATAGAAAAATGAAGGATATGTGATGCAACACGGGGTAGAAGAGAGGAAGAGACAAAATGGGAGATATTAAAATTTAATTAATAAAAGTGAGAAAAAACAACATTTGTCTACCTATTATTGGACCACGTATAGGTATTTAGGAGGAAAGTGATCATGAATCTTCAAGAGCGAAGTATTTTTCTTTTTTTGTGATACATTATGGAAGTATTGATTCACCTTATGTTGATATTGAACTCATAAACATATGAAAATGTTGACATGTCGACATAAATTTAATAGCATGATTTTAAATTGTTCATGAAGTCATTTCACTCTTACTTGACTTAAAAAAATGACGTGGCACATCGAGGTGTCAACTTCTATATAAGGTGATGATTTCTTTTATTGATTTGTGTCTTTTTTTGGGTTAGATTACATGACATTTTTTTATATATAACATGACTTTTTCTTTATTGGGTAAAATACATTTTTGTTCTCTATTCTAAGCTTGATGTTTAGTTGGTCATTGGTAGGAACTAGACTTTCATTGCTCACTTAGCAAGAATATTAATTTTAATAATATATATTTTTAATTTCACGTGAGCCATGCTCTCTCCCCTTTTTATTCTTCTCCAAAGTTGCAAACGAACGTCGAAAATGAGTACTAAAACGATGAATTGGCCATGGTCGGAGAATGACGTGAAACAATATGTTGTTAGAGAAGGCGAAGAATAGATAGAGATAGGAGAAATATATAGGAAATAAAAAAGTAGAGAGACGAAAAAAATGATAAAGTCATGTCATCTAAAGTATATTATACTAAAAATTTACACCTCATTTAAAAATGTGATCATTTTTCTATCCGTCAATAAGCAGTCTTAAATGACTCCCGTAACTATTTTGAATTGTATTTCAAATTTCAAGGGCTAAATTATTATTAACGCGAAACTCAAATTTCAACAATCATACTATATTTTCAATCAAAAGATTGTAAGTTCGTATAGTTCCCCCAATCATGGCTACTAATAAAATCAGATTGTAAGTTCGTATAGTTCCCCCAATCGGGGCTTTGCATTTGACATTCGTTGGGCTTCCCTCTTAGGGGGCCTGCATCCCGGCGTTTTTGTACAATAAACCTCTCCGACCGAAGACTAGCGGTAGGTATGGTATAGTTCAGTAATAATTGTAGGTTTGATATATTATATTTATAATTAGTCCCTATCTCATAAATAAAAAAAGATGGAAAGATTCGGTGTCCATAAAAAATAAAATGTTGGATGGAGTGACCTGCCACTGTCATAATTATGGAGTGGATGCATAGTCAGAAGAGACTTTTTGGTTTTTTAATTAATTTTCAATAGTATAAAACTATGAGCCACACTATTCTAGGAATACTAAATAATTTTTCAGTGTTCAAGTGATTTTTTTAAAAATAAAATAATAGTGTAGTCTAAAAAATATTTGGAGGGAATTGTAAAGTTAAAATTCAATTCTAAAAATAATTGTAAAGTGTGAAGATATTGAAATTTTTTTGAGTACCACACGGATGAAGATTTAATTTTCAAGCTCAACAAAGTAATTTGTGTGTTTTTTTTTTTACAAAACAGAGTAATTTGTGTTACTTTGTGTTTAATCTACTTAACTATATTTAGATTGACAAAATAATAATAATAATAATAATACAAAGATAATATTTGTTGATGACTTCTATTTTTTTTTACAAATATAAATAAGAGAAAAATCATGAACAGTGAACTACGGAAAAAAGTTTATACTTCAACCTGCTCTGATGAATTCGTTTATATGGATAAAAAATAGTGTATCTTTTACTTTATCTTATTTCTAATATATGTTACGAGTAATAAACTGGTTTTTTTAAAAAAGAATATAGCTAAATTGATTAAGACAAATATTATCATAAAAAAAAGTCGTATTTAAATTCTCACACCACGTATTGTTAAATTAAAAAAACAAAACAAAAACCTACTATACGTTACCAATTTGTTGATTACATAAAATTTTACCAAAAATTAGAAAAAAATACCTTATGTTCATTGTAAGAGGCATTTTGTTGATTGGTAAATTTTATATAAAGTAATAATAGAAAATAAAAGTAAGATTATATATGTGATACATCACATAGCTAACTCCATTCTTTTGAAACTCGTGTTCGAAAAGTGTGGACGATAAAATAATATGTTTATTATTTTATTAAACTTTTAAAGGACATGTATATCGAACTCTCAAAATTGTATCAGTTTAGTCTCTATAATAAAAAATAAAAGTATAATAAGTTATCCAATTTTTAAGTACATATATTTAGGTTACGTCACCAAAACACTCCATCTAAGTAAAAATTAATTCTTCAGATAATATTTAAAAATTATAAAGTACGAGAATTAAAAACACATCATCTTTAAATTTAAAGGACCAAGCTTGTAATTTACGTAAAATTATTTTAGACGACTAAATAGACGAAACTATAGGACTAAAGTTGTAATTTAGACCTTTAAAATAATGAAAGCTTCACGTGACGTCGGATGAAAAGCACGTGGTGCCGTGCTGGTGGAGGAGGACGAAGCCACCCAAGAGGCAACAGCCAACAACCAGCACATTATATTATTTTTTAAAAAATGTTGTTTTATGTTATTTATTATATTTTTTAGTTTAAAATTTAAATTATATTCCGACGCATGGCTTTTGTCAATTTATATATATATATACACATTACTTTAAAATACCAATCGTTTCGATCCTTCTGTTCCATTTCGTCTTTTCATTATAATTTTGACACCACACACTAAATTTAATAAATTTTTTAAATAATCGTACTTTTATTTATTAGATGTATAATTTGCGTGGTGATTATGTCAACAATAAATTAATTAAAATGTCAATCTGAACTAAATTATATTTAATCTTGGTGATTGTAATTTAAGTTTATGTTTATTTTAGTTGTTATGCATTATAATGTATACTTCCAAATTTAGATCATTTTGGTATATGTATTTTTAAAAATGCACGTTTTGATCTATGTACGCTTAAAAAGTAACCATTTTTAATAAAATGAAGGGATCGAAATTATCAAAATACAATAGTTTAAAACGAATTAAAGTTGAGATTATGAGTAAAACATAGAGAACCAACGTAAACTTGGAGAATACAATAATAATTTAACTAAACAAACTGTATATTTTTAATAAAATTTGAATCTCGACAAAGAATTAGACTATATTTTTATTATTTGGGATTGGGCATAAATATAGTTTCCCCAAATAATTTCTCAACGATTCCGAATTCAGCTACCCATAAAAAATCATTATGCATTTTCCAGAGCTTCGCGGCTAAAGCCTGGTCGATGCTGGCAGATTAAGAATTATACTTTCGTACCGTAAATTTTGGAGCGCCCCCAATTGAACAAAGTTCTGCTTTCTTCTGTTGCAAGCGTTCATTTTGACTTTCTGAATTGGGGGAGCTTCGTAAATTTCTAGCGCTTTCCTGGAAATGGGTTTTCACGATTTGGATTTCAATTGAAAACCCATTGCCGGAGTAGTGCTATGCTAATGGTGGAATCCAAGTGA

mRNA sequence

ATGCCATCTGACGGAGTAGAGCATTACGAGCCTACGGCAAATGAGGAAGAGCTGCTCCTAAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCGGGGCAGAATGGCCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTTCAGCGCTTTCCTGGAAATGGGTTTTCACGATTTGGATTTCAATTGAAAACCCATTGCCGGAGTAGTGCTATGCTAATGGTGGAATCCAAGTGA

Coding sequence (CDS)

ATGCCATCTGACGGAGTAGAGCATTACGAGCCTACGGCAAATGAGGAAGAGCTGCTCCTAAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCGGGGCAGAATGGCCAGACATTACAACGCCCGCGTTCGACCTCGGACCTTTCAGCGCTTTCCTGGAAATGGGTTTTCACGATTTGGATTTCAATTGAAAACCCATTGCCGGAGTAGTGCTATGCTAATGGTGGAATCCAAGTGA

Protein sequence

MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQRFPGNGFSRFGFQLKTHCRSSAMLMVESK
Homology
[Close]
BLAST of Moc09g07800 vs. NCBI nr
Match: XP_022159003.1 (uncharacterized protein LOC111025448 [Momordica charantia])

HSP 1 Score: 78.2 bits (191), Expect = 3.9e-11
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQ 58
           MP+D +E YEP  NE ELLLNLDLLE +R  AQLRL E + RMARHYN R++PR+FQ
Sbjct: 514 MPTDRIEQYEPLRNEAELLLNLDLLEGKRETAQLRLVECQNRMARHYNTRIQPRSFQ 570

[Close]
BLAST of Moc09g07800 vs. NCBI nr
Match: XP_022142775.1 (protein NYNRIN-like [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-11
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQ 58
           MP++ +++YE   NEEELLLNLDLL+E+R +AQLRL EY+ R+ RHYN+ VRPR+FQ
Sbjct: 329 MPTERIDYYEHVRNEEELLLNLDLLDEKREVAQLRLTEYQNRITRHYNSVVRPRSFQ 385

[Close]
BLAST of Moc09g07800 vs. NCBI nr
Match: XP_022156070.1 (uncharacterized protein K02A2.6-like [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 6.7e-11
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQ 58
           MP++ VE+YE   NEEELLL LDL++E+R  AQLRLAEY+ +MARHYN+RVR R+FQ
Sbjct: 246 MPTERVEYYERVRNEEELLLYLDLIDEKREAAQLRLAEYQNQMARHYNSRVRSRSFQ 302

[Close]
BLAST of Moc09g07800 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 1.6e-09
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQ 58
           MP+  VE+++  AN E LL+NLDLLEE+R+ +QLRLAEY+ RMAR+YNARV+ RTF+
Sbjct: 730 MPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFK 786

[Close]
BLAST of Moc09g07800 vs. NCBI nr
Match: XP_022146366.1 (uncharacterized protein LOC111015594 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 6.2e-09
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQRFP 60
           MP+  VE++    N E LL+NLDLLEE+R+ +QLRL EY+ RMAR+YNARV+ RTF+  P
Sbjct: 107 MPTPXVENFYEQTNSEALLVNLDLLEEKRSHSQLRLVEYQNRMARYYNARVKVRTFK--P 166

Query: 61  GN 63
           GN
Sbjct: 167 GN 166

[Close]
BLAST of Moc09g07800 vs. ExPASy TrEMBL
Match: A0A6J1DXL9 (uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025448 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.9e-11
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQ 58
           MP+D +E YEP  NE ELLLNLDLLE +R  AQLRL E + RMARHYN R++PR+FQ
Sbjct: 514 MPTDRIEQYEPLRNEAELLLNLDLLEGKRETAQLRLVECQNRMARHYNTRIQPRSFQ 570

[Close]
BLAST of Moc09g07800 vs. ExPASy TrEMBL
Match: A0A6J1DP99 (uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023037 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 38/57 (66.67%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQ 58
           MP++ VE+YE   NEEELLL LDL++E+R  AQLRLAEY+ +MARHYN+RVR R+FQ
Sbjct: 246 MPTERVEYYERVRNEEELLLYLDLIDEKREAAQLRLAEYQNQMARHYNSRVRSRSFQ 302

[Close]
BLAST of Moc09g07800 vs. ExPASy TrEMBL
Match: A0A6J1CLW5 (protein NYNRIN-like OS=Momordica charantia OX=3673 GN=LOC111012813 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.2e-11
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQ 58
           MP++ +++YE   NEEELLLNLDLL+E+R +AQLRL EY+ R+ RHYN+ VRPR+FQ
Sbjct: 329 MPTERIDYYEHVRNEEELLLNLDLLDEKREVAQLRLTEYQNRITRHYNSVVRPRSFQ 385

[Close]
BLAST of Moc09g07800 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.9e-10
Identity = 36/57 (63.16%), Postives = 48/57 (84.21%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQ 58
           MP+  VE+++  AN E LL+NLDLLEE+R+ +QLRLAEY+ RMAR+YNARV+ RTF+
Sbjct: 730 MPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFK 786

[Close]
BLAST of Moc09g07800 vs. ExPASy TrEMBL
Match: A0A6J1CZ55 (uncharacterized protein LOC111015594 OS=Momordica charantia OX=3673 GN=LOC111015594 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.0e-09
Identity = 37/62 (59.68%), Postives = 48/62 (77.42%), Query Frame = 0 

Query: 1   MPSDGVEHYEPTANEEELLLNLDLLEERRAMAQLRLAEYRGRMARHYNARVRPRTFQRFP 60
           MP+  VE++    N E LL+NLDLLEE+R+ +QLRL EY+ RMAR+YNARV+ RTF+  P
Sbjct: 107 MPTPXVENFYEQTNSEALLVNLDLLEEKRSHSQLRLVEYQNRMARYYNARVKVRTFK--P 166

Query: 61  GN 63
           GN
Sbjct: 167 GN 166

The following BLAST results are available for this feature:
BLAST of Moc09g07800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022159003.13.9e-1166.67uncharacterized protein LOC111025448 [Momordica charantia][more]
XP_022142775.16.7e-1163.16protein NYNRIN-like [Momordica charantia][more]
XP_022156070.16.7e-1166.67uncharacterized protein K02A2.6-like [Momordica charantia][more]
XP_022156986.11.6e-0963.16uncharacterized protein LOC111023816 [Momordica charantia][more]
XP_022146366.16.2e-0959.68uncharacterized protein LOC111015594 [Momordica charantia][more]
BLAST of Moc09g07800 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g07800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DXL91.9e-1166.67uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DP993.2e-1166.67uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1CLW53.2e-1163.16protein NYNRIN-like OS=Momordica charantia OX=3673 GN=LOC111012813 PE=4 SV=1[more]
A0A6J1DWM27.9e-1063.16Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1[more]
A0A6J1CZ553.0e-0959.68uncharacterized protein LOC111015594 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
BLAST of Moc09g07800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 15..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g07800.1Moc09g07800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component GO:0030430 host cell cytoplasm
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity