Moc09g07600 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g07600
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionU1 small nuclear ribonucleoprotein C
Locationchr9: 6043144 .. 6046096 (-)
RNA-Seq ExpressionMoc09g07600
SyntenyMoc09g07600
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCGGTGCGTTCTTCCATCTCCATCTTCTTCTATGGCGATTACATCTCCCTCCCTCTCGCTAAAGTTTAAGTGATCCGATTTCGCTTTGTGTGCAGGTATTATTGTGACTATTGTGACACATATCTGACTCATGATTCTGTAAGTCCTATCGTTTCATTCAGATAACAATGTCATTTAATATTCTTTTGATTATCGCTGCTAGATTTGTTAGGACTTTTCTTTTTGGGGTTTCCTTCGCCGACATTGCAGTTCTGTCTTTGTTCTGGGGGATGTTGTGCGGTTAATGATTTTTTAAAAATTTTGTAGTGCACCTATCAGTTGCTCGAAGGAATTTTAGAAAAGTTTACTTGATATTACTGTGATCGGTACTGGGGTTAGATCGAATTCTTATGTTTATGCTCAGTGGATCAAATCTACTGTTTGTGGCTTTTTTTATTTTTACTGAATTTCAGTGTTCCTGATGTTGAGTGTACGCAGATTGGTTTGTGTGATGCGTGTTGCTAATGGGAAAGTTATGATCAAAGGACTCCTTTTAGAGTAGAAACTACTAAAACTTAAAGCGGAAGCTAAAGATTACTTGCAATCGGAACAAGTTATAGAAGGCTTCCCAGCCATAATTTATCTTAGAAAATGAGTAAGCTGTAAGGGTGTGTTTGTGGGTAATGGTAGGATGAGTGATTTTGAAAAAAGAGATTTAAGTATAATTGTTTTTTTTGTATGAAACAAATATTTCAAGGGAAGTATAACTGATTTTTCAAAATCACTATCCAAGTAATACCTCAAAAATCAATTTATTATTTGCAAAACATGATCCATGGAAAGGGAAGTGATTTTGACAATGGCGATGTCAAAATCACTCCCAAACACACCCTAATTGTGAAAGGCTTTAGAGAGAGCACTTCATGAAGCTGCATGAGTCTTTATCAAAGTGCTTTCCTTTCTCTTATTTAAGTCTTTGATTTCTTTAGAAAAAATGCATGCCCTAGGCCATGATTTAACGATGGAAACACACAAAACACTTGCTCTCAAACCAAATATGCCATGCCTTTAGTTTCTTTCAAACTAAGATTGGTTTGTACAACTTTTAATGGTTTATCTGAATTGCATTTTATTACTTATAGTGTTCTAGATACAGTAATATTTGGTTCTTAAGTCTTTTCTGTTTGAGTAGGCCCTTCTTCTTGTTGCTCATATTTAGTCTTTTTGGTATCTCAGCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGTATCTTAATCTTGTCCACGTTTCAATTTAGCATAGCATTCCAATTGTTGAAGAACTCATCGGACCATTTCAGAAGTCAAATTTAATAGTAGTTTTATGTTTTTAAAAAACAAAACCACTTTCAGACTTTAAAAACTTGATTGGTTGTAGTTTTAGAAACACTTTTAGAAGGGGAAAAACATAGGTAAGCTTTTATAGTTATTTAGTGCTTGCTCTCTGTTTACTGAAATACGATAAGTGATTTATAATTTGAGAACATTTTAAAGAAAAAACGAAGAACAGACTCTTAATTCCTGATTTCTGGATGCACTCCAGGCAAACGTGCGATCATACTACCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAGGAACATCTCGGTCAAGCAGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAACATTTACTTGGTCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGCTGCACCGTTAATGCCGGGCATTAGGCCTCCAGTTTTGCCAAGACCAATGCCTGGTGCTCAAGGTAAAATTCACATAACTGATACCTTTTAGATTCGGCAATTTTTTATGCATATTGCATATTCATTTGGTTTTGTTGTTCCTTATTTTGCACTTAAACCTACTAAAACCACATTGTTATGCTTTTTGATCAGTAAAAAGCTAAAAATAGTTAAAAGTAATTATTATTAATTAGAATATTGGAGATAATTCTTCAGCATTGTAAATGCCCAAGGATAATTTGATACCTTTCTGTCTGGTTGCAAATAATTCTATTGGTACAGAAAGGATGTTCATTCCTTTCCGCTCAACGCGCAATAGATGAAATTTCATTAGAATATGACCTGGTAGGTGATGAGAGCAATGTAGGTTTACTAGTTACTAGTACTACTCTCCTTTAGGAGGTAGATAGATCCATTTTTTGGAGCTTATCAGATTTAATACTCCGGGGTCAGTTTCTTAGAGTTTTTGTAATTAATAGTTAGGTGTTATTCTCTTAGATTGGAGTCTCTTTCTTTAAAGGATGTTATGTTGTTAGGTTGACTCTTGAGTATGCTACTTGATTCAGCTGATCCTCAAAATCTTGATGTCCTTACTAGGGTCTGAGGAGGTCGGCTCTTGGCCAAAACTAACGTTGGATCAACATAGTAATTAAAAATGAAAAACCAATGCCAAGACCAATTTTTAAAAAACCAAACTGAGTGGCTACTTATCATTTTATACTATAGAAAATTAAACCGACTGACAACTATACTCCAAATCAACCCAACCCGACTTGAGTCAGTCGGGCTTTTCAACGTTATCTCGCACTCCTGAATGGAATTAGGTATAACCTGCAGTAGGAATGGCATTCTATACTATGCATCGAATTGATTGAACTCCTCTCCTCTGTTAACATAGGATATCTACCTACTCCTACAATGCCACCTATGATGGCCCCACCGGGAGCTCCTATGCCTGGCCACGTGAACATGCCTACCAGGCCGCCTCCTCCAGCACCAGTGCCAGTTCCAGGTAGCACACCGCAACCAACTTCGACTAATGGCGCCTCGATGGGCGCACCCTCAATGTATCAAGGAAATCCAGCAGCACCAGGAAGCGGAGGGTATGATAGTTTTACCACAATGGCTCAACCTTCTGAGTCTAATCATTAG

mRNA sequence

ATGCCTCGGTATTATTGTGACTATTGTGACACATATCTGACTCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATACTACCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAGGAACATCTCGGTCAAGCAGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAACATTTACTTGGTCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGCTGCACCGTTAATGCCGGGCATTAGGCCTCCAGTTTTGCCAAGACCAATGCCTGGTGCTCAAGGATATCTACCTACTCCTACAATGCCACCTATGATGGCCCCACCGGGAGCTCCTATGCCTGGCCACGTGAACATGCCTACCAGGCCGCCTCCTCCAGCACCAGTGCCAGTTCCAGGTAGCACACCGCAACCAACTTCGACTAATGGCGCCTCGATGGGCGCACCCTCAATGTATCAAGGAAATCCAGCAGCACCAGGAAGCGGAGGGTATGATAGTTTTACCACAATGGCTCAACCTTCTGAGTCTAATCATTAG

Coding sequence (CDS)

ATGCCTCGGTATTATTGTGACTATTGTGACACATATCTGACTCATGATTCTCCATCTGTGAGGAAGCAGCATAATGCAGGCTACAAACATAAGGCAAACGTGCGATCATACTACCAGCAATTTGAGGAGCAACAAACCCAAAGTTTAATTGACCAGAGGATCAAGGAACATCTCGGTCAAGCAGCAGCATTCCAGCAGGTTGGTGCAGCCTATAATCAACATTTACTTGGTCAAAGACCTCGTCTTCCTGTACTACCTACTCCTGTAATGCCAGGAGCTGCACCGTTAATGCCGGGCATTAGGCCTCCAGTTTTGCCAAGACCAATGCCTGGTGCTCAAGGATATCTACCTACTCCTACAATGCCACCTATGATGGCCCCACCGGGAGCTCCTATGCCTGGCCACGTGAACATGCCTACCAGGCCGCCTCCTCCAGCACCAGTGCCAGTTCCAGGTAGCACACCGCAACCAACTTCGACTAATGGCGCCTCGATGGGCGCACCCTCAATGTATCAAGGAAATCCAGCAGCACCAGGAAGCGGAGGGTATGATAGTTTTACCACAATGGCTCAACCTTCTGAGTCTAATCATTAG

Protein sequence

MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQAAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGAQGYLPTPTMPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPGSGGYDSFTTMAQPSESNH
Homology
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BLAST of Moc09g07600 vs. NCBI nr
Match: XP_022150286.1 (U1 small nuclear ribonucleoprotein C [Momordica charantia])

HSP 1 Score: 386.7 bits (992), Expect = 1.2e-103
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGAQGYLPTPT 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGA GYLPTPT
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGAXGYLPTPT 120

Query: 121 MPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPGS 180
           MPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPGS
Sbjct: 121 MPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPGS 180

Query: 181 GGYDSFTTMAQPSESNH 198
           GGYDSFTTMAQPSESNH
Sbjct: 181 GGYDSFTTMAQPSESNH 197

[Close]
BLAST of Moc09g07600 vs. NCBI nr
Match: XP_038899936.1 (U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida])

HSP 1 Score: 347.1 bits (889), Expect = 1.0e-91
Identity = 180/198 (90.91%), Postives = 185/198 (93.43%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAP-LMPGIRPPVLPRPMPGAQGYLPTP 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAP LMPGIRPPVLPRP+PGA GYLP P
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPVPGAPGYLPAP 120

Query: 121 TMPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPG 180
           TMPPMMAPPGAPMPG VN+P RPPPPA  PVPGS PQP+STNGA +  PSMYQ NPAAPG
Sbjct: 121 TMPPMMAPPGAPMPGQVNIPARPPPPA--PVPGSAPQPSSTNGAPLAPPSMYQANPAAPG 180

Query: 181 SGGYDSFTTMAQPSESNH 198
           SGGY+SFTTMAQPSE NH
Sbjct: 181 SGGYESFTTMAQPSEPNH 196

[Close]
BLAST of Moc09g07600 vs. NCBI nr
Match: XP_004148886.1 (U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical protein Csa_015811 [Cucumis sativus])

HSP 1 Score: 342.0 bits (876), Expect = 3.3e-90
Identity = 179/199 (89.95%), Postives = 188/199 (94.47%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAP-LMPGIRPPVLPRPMPGAQGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPGAAP LMPGIRPPVLPRP+PGA GYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPG 180
           TMPPMMAPPGAP+PG VN+P+RPPPPA  P+PGS PQP+STNGA + APS YQ NPAAPG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPA--PLPGSAPQPSSTNGAPLAAPSTYQANPAAPG 180

Query: 181 SGGYDSFTTMAQP-SESNH 198
           SGGYDSFT+MAQP SESNH
Sbjct: 181 SGGYDSFTSMAQPSSESNH 197

[Close]
BLAST of Moc09g07600 vs. NCBI nr
Match: XP_008451425.1 (PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa] >TYK18264.1 U1 small nuclear ribonucleoprotein C [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.7e-90
Identity = 178/199 (89.45%), Postives = 188/199 (94.47%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAP-LMPGIRPPVLPRPMPGAQGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PGAAP LMPGIRPPVLPRP+PGA GYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPG 180
           TMPPMMAPPGAP+PG VN+P+RPPPPA  P+PGS PQP+STNGA + APS YQ NPAAPG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPA--PIPGSAPQPSSTNGAPLAAPSTYQANPAAPG 180

Query: 181 SGGYDSFTTMAQP-SESNH 198
           SGGYDSFT+MAQP SESNH
Sbjct: 181 SGGYDSFTSMAQPSSESNH 197

[Close]
BLAST of Moc09g07600 vs. NCBI nr
Match: XP_022953847.1 (U1 small nuclear ribonucleoprotein C-like [Cucurbita moschata] >KAG6575868.1 U1 small nuclear ribonucleoprotein C, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 338.2 bits (866), Expect = 4.8e-89
Identity = 179/199 (89.95%), Postives = 182/199 (91.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAP-LMPGIRPPVLPRPMPGAQGYLPTP 120
           AAAF QVGAAYNQHLLGQRPRLPVLPTPVMPGAAP L+PGIRPPVLPRP PGA GYLP P
Sbjct: 61  AAAFHQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLLPGIRPPVLPRPTPGAPGYLPAP 120

Query: 121 TMPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGA-SMGAPSMYQGNPAAP 180
           TMPPMMAPPGAPMPG VNM  RPPPP P P+PGSTPQP+S NGA S  AP MYQ NPAAP
Sbjct: 121 TMPPMMAPPGAPMPGQVNMLARPPPP-PAPIPGSTPQPSSANGAPSAAAPLMYQANPAAP 180

Query: 181 GSGGYDSFTTMAQPSESNH 198
           GSGGYDSFTT AQPSESNH
Sbjct: 181 GSGGYDSFTTTAQPSESNH 198

[Close]
BLAST of Moc09g07600 vs. ExPASy Swiss-Prot
Match: F6HQ26 (U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g01170 PE=3 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 4.8e-68
Identity = 149/213 (69.95%), Postives = 159/213 (74.65%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMPGA--------APLMPGIRPPVLPR 120
            AAFQQVGAAYNQHL+       RPRLPVLPTP MP A        +PL+PG+RPPVLPR
Sbjct: 61  TAAFQQVGAAYNQHLVSFPGNPPRPRLPVLPTPGMPVAGSAPLPMNSPLVPGMRPPVLPR 120

Query: 121 PMPGAQGYLPTPTMPPMMAPPGA---PMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGAS 180
           P+PGA GY+P P MP MMAPPGA   PMP   ++P  P    P  VPGST  PTS    S
Sbjct: 121 PVPGAPGYMPAPGMPSMMAPPGAPSMPMPPLNSLPRPPTMNVPPAVPGSTSTPTSGGAPS 180

Query: 181 MGAPSMYQGNPAAPGSGGYDSFTTMAQPSESNH 198
           M    MYQ NPA P SGG+DSF   AQ  E+NH
Sbjct: 181 MMTQPMYQANPAGPTSGGFDSFNINAQGPEANH 213

[Close]
BLAST of Moc09g07600 vs. ExPASy Swiss-Prot
Match: C5XYW4 (U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.5e-50
Identity = 137/230 (59.57%), Postives = 150/230 (65.22%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMPGA---APLMPGIRPPVLPRP---- 120
           AAAF Q GA +NQH+L       RPRLP+LPTP MP     APLMPG+RPP+LP P    
Sbjct: 61  AAAF-QAGAPFNQHMLAFPGAVARPRLPILPTPGMPHGFPQAPLMPGVRPPILPAPGVPG 120

Query: 121 MPGAQGYLPTPTMPP-MMAPPGAPMPGHVNMPTRPP-----PPAPVPVPGSTPQPTS-TN 180
            PGA   +P P  PP  M  PGAP PG +  P  PP       AP+P P + P PTS   
Sbjct: 121 YPGAPPTMPQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTSGVP 180

Query: 181 GA----SMGAPSMYQGNPAAPG---SGGYDSFTTMAQ-------PSESNH 198
           GA    S   P++YQ NP AP    SG   +  T  Q       PSE NH
Sbjct: 181 GAPIPNSAAPPAIYQANPPAPAGPTSGAPPAPPTAPQPAFSYALPSEGNH 228

[Close]
BLAST of Moc09g07600 vs. ExPASy Swiss-Prot
Match: Q56XE4 (U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g03120 PE=2 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.5e-50
Identity = 121/196 (61.73%), Postives = 138/196 (70.41%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGAQGYLPTPT 120
              +QQVGA +NQH+L  RPR P++   + PG+ P+  G+RPPVLPRPM   QGY+P P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM---LPPGSMPM--GMRPPVLPRPMMPPQGYMPPPG 120

Query: 121 MPPMMAPPGAPM-PGHVNMPTRPPPPAPVP-----VPGSTPQPTSTNGA-----SMGAPS 180
           +P MMAPPGAP+ P   N   RPP  AP+P      PG  P P    G       +  P 
Sbjct: 121 VPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPPPP 180

Query: 181 MYQGNPAAPGSGGYDS 186
            Y  NPAAP SG +++
Sbjct: 181 PYHTNPAAPPSGNFNN 190

[Close]
BLAST of Moc09g07600 vs. ExPASy Swiss-Prot
Match: C5XZK6 (U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880 PE=3 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 3.9e-49
Identity = 139/233 (59.66%), Postives = 152/233 (65.24%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR+YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLG-----QRPRLPVLPTPVMP------GAAPLMPGIRPPVLPRP- 120
           AAAF Q GA +NQH+L       RPRLP+LPTP MP        APLMPG+RPP+LP P 
Sbjct: 61  AAAF-QAGAPFNQHMLTFPGAVARPRLPILPTPGMPHGFPQAPGAPLMPGVRPPILPAPG 120

Query: 121 MPGAQGYLPT---PTMPP-MMAPPGAPMPGHVNMPTRPP-----PPAPVPVPGSTPQPTS 180
           +PG  G  PT   P  PP  M  PGAP PG +  P  PP       AP+P P + P PTS
Sbjct: 121 IPGYPGGPPTMLQPGAPPGSMPQPGAP-PGSMPQPGAPPGSMPMQMAPLPRPPTLPPPTS 180

Query: 181 -TNGA----SMGAPSMYQGNPAAPG---SGGYDSFTT-------MAQPSESNH 198
              GA    S   P++YQ NP AP    SG   +  T        AQPSE NH
Sbjct: 181 GVPGAPIPNSAAPPAIYQTNPPAPAGPTSGAPPAPPTAPQPAFSYAQPSEGNH 231

[Close]
BLAST of Moc09g07600 vs. ExPASy Swiss-Prot
Match: Q03369 (U1 small nuclear ribonucleoprotein C OS=Xenopus laevis OX=8355 GN=snrpc PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-17
Identity = 68/153 (44.44%), Postives = 80/153 (52.29%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MP++YCDYCDTYLTHDSPSVRK H +G KHK NV+ YYQ++ E+Q QSLID+        
Sbjct: 1   MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDK-------T 60

Query: 61  AAAFQQ-----VGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGAQGY 120
            AAFQQ        A         P  P L  P  PG  P  P   PP++P   P   G 
Sbjct: 61  TAAFQQGKIPPTPFAAPPAGSAMIPPPPSLGGPPRPGMMPAPPMAGPPMMPMMGPPPPGM 120

Query: 121 LPTPTMPPMMAPPGAPMPGHVNMPTRPPPPAPV 149
           +P    P M  P GA MP     P   PP  P+
Sbjct: 121 MPVGHGPGMRPPMGAHMPMMPGPPMMRPPTRPM 146

[Close]
BLAST of Moc09g07600 vs. ExPASy TrEMBL
Match: A0A6J1DB31 (U1 small nuclear ribonucleoprotein C OS=Momordica charantia OX=3673 GN=LOC111018488 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 5.7e-104
Identity = 196/197 (99.49%), Postives = 196/197 (99.49%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGAQGYLPTPT 120
           AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGA GYLPTPT
Sbjct: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGAXGYLPTPT 120

Query: 121 MPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPGS 180
           MPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPGS
Sbjct: 121 MPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPGS 180

Query: 181 GGYDSFTTMAQPSESNH 198
           GGYDSFTTMAQPSESNH
Sbjct: 181 GGYDSFTTMAQPSESNH 197

[Close]
BLAST of Moc09g07600 vs. ExPASy TrEMBL
Match: A0A0A0K515 (U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 PE=3 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 1.6e-90
Identity = 179/199 (89.95%), Postives = 188/199 (94.47%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAP-LMPGIRPPVLPRPMPGAQGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPVMPGAAP LMPGIRPPVLPRP+PGA GYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVMPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPG 180
           TMPPMMAPPGAP+PG VN+P+RPPPPA  P+PGS PQP+STNGA + APS YQ NPAAPG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPA--PLPGSAPQPSSTNGAPLAAPSTYQANPAAPG 180

Query: 181 SGGYDSFTTMAQP-SESNH 198
           SGGYDSFT+MAQP SESNH
Sbjct: 181 SGGYDSFTSMAQPSSESNH 197

[Close]
BLAST of Moc09g07600 vs. ExPASy TrEMBL
Match: A0A5A7UNW2 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002060 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.7e-90
Identity = 178/199 (89.45%), Postives = 188/199 (94.47%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAP-LMPGIRPPVLPRPMPGAQGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PGAAP LMPGIRPPVLPRP+PGA GYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPG 180
           TMPPMMAPPGAP+PG VN+P+RPPPPA  P+PGS PQP+STNGA + APS YQ NPAAPG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPA--PIPGSAPQPSSTNGAPLAAPSTYQANPAAPG 180

Query: 181 SGGYDSFTTMAQP-SESNH 198
           SGGYDSFT+MAQP SESNH
Sbjct: 181 SGGYDSFTSMAQPSSESNH 197

[Close]
BLAST of Moc09g07600 vs. ExPASy TrEMBL
Match: A0A1S3BS92 (U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.7e-90
Identity = 178/199 (89.45%), Postives = 188/199 (94.47%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAP-LMPGIRPPVLPRPMPGAQGYLPTP 120
           AAAFQQVGAA+NQHLLGQRPRLPVLPTPV+PGAAP LMPGIRPPVLPRP+PGA GYLPTP
Sbjct: 61  AAAFQQVGAAFNQHLLGQRPRLPVLPTPVIPGAAPGLMPGIRPPVLPRPIPGAPGYLPTP 120

Query: 121 TMPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGASMGAPSMYQGNPAAPG 180
           TMPPMMAPPGAP+PG VN+P+RPPPPA  P+PGS PQP+STNGA + APS YQ NPAAPG
Sbjct: 121 TMPPMMAPPGAPIPGQVNIPSRPPPPA--PIPGSAPQPSSTNGAPLAAPSTYQANPAAPG 180

Query: 181 SGGYDSFTTMAQP-SESNH 198
           SGGYDSFT+MAQP SESNH
Sbjct: 181 SGGYDSFTSMAQPSSESNH 197

[Close]
BLAST of Moc09g07600 vs. ExPASy TrEMBL
Match: A0A6J1GPE6 (U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC111456262 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 2.3e-89
Identity = 179/199 (89.95%), Postives = 182/199 (91.46%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAP-LMPGIRPPVLPRPMPGAQGYLPTP 120
           AAAF QVGAAYNQHLLGQRPRLPVLPTPVMPGAAP L+PGIRPPVLPRP PGA GYLP P
Sbjct: 61  AAAFHQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPGLLPGIRPPVLPRPTPGAPGYLPAP 120

Query: 121 TMPPMMAPPGAPMPGHVNMPTRPPPPAPVPVPGSTPQPTSTNGA-SMGAPSMYQGNPAAP 180
           TMPPMMAPPGAPMPG VNM  RPPPP P P+PGSTPQP+S NGA S  AP MYQ NPAAP
Sbjct: 121 TMPPMMAPPGAPMPGQVNMLARPPPP-PAPIPGSTPQPSSANGAPSAAAPLMYQANPAAP 180

Query: 181 GSGGYDSFTTMAQPSESNH 198
           GSGGYDSFTT AQPSESNH
Sbjct: 181 GSGGYDSFTTTAQPSESNH 198

[Close]
BLAST of Moc09g07600 vs. TAIR 10
Match: AT4G03120.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.5e-51
Identity = 121/196 (61.73%), Postives = 138/196 (70.41%), Query Frame = 0 

Query: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRSYYQQFEEQQTQSLIDQRIKEHLGQ 60
           MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVR YYQQFEEQQTQSLIDQRIKEHLGQ
Sbjct: 1   MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRIYYQQFEEQQTQSLIDQRIKEHLGQ 60

Query: 61  AAAFQQVGAAYNQHLLGQRPRLPVLPTPVMPGAAPLMPGIRPPVLPRPMPGAQGYLPTPT 120
              +QQVGA +NQH+L  RPR P++   + PG+ P+  G+RPPVLPRPM   QGY+P P 
Sbjct: 61  TGGYQQVGAVFNQHMLA-RPRPPMM---LPPGSMPM--GMRPPVLPRPMMPPQGYMPPPG 120

Query: 121 MPPMMAPPGAPM-PGHVNMPTRPPPPAPVP-----VPGSTPQPTSTNGA-----SMGAPS 180
           +P MMAPPGAP+ P   N   RPP  AP+P      PG  P P    G       +  P 
Sbjct: 121 VPQMMAPPGAPLPPPPQNGILRPPGMAPIPGQGGGPPGMAPIPGQGGGPPPNYNGLPPPP 180

Query: 181 MYQGNPAAPGSGGYDS 186
            Y  NPAAP SG +++
Sbjct: 181 PYHTNPAAPPSGNFNN 190

The following BLAST results are available for this feature:
BLAST of Moc09g07600 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022150286.11.2e-10399.49U1 small nuclear ribonucleoprotein C [Momordica charantia][more]
XP_038899936.11.0e-9190.91U1 small nuclear ribonucleoprotein C isoform X1 [Benincasa hispida][more]
XP_004148886.13.3e-9089.95U1 small nuclear ribonucleoprotein C [Cucumis sativus] >KGN44835.1 hypothetical ... [more]
XP_008451425.15.7e-9089.45PREDICTED: U1 small nuclear ribonucleoprotein C [Cucumis melo] >KAA0057542.1 U1 ... [more]
XP_022953847.14.8e-8989.95U1 small nuclear ribonucleoprotein C-like [Cucurbita moschata] >KAG6575868.1 U1 ... [more]
BLAST of Moc09g07600 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F6HQ264.8e-6869.95U1 small nuclear ribonucleoprotein C OS=Vitis vinifera OX=29760 GN=VIT_07s0104g0... [more]
C5XYW43.5e-5059.57U1 small nuclear ribonucleoprotein C-2 OS=Sorghum bicolor OX=4558 GN=Sb04g028260... [more]
Q56XE43.5e-5061.73U1 small nuclear ribonucleoprotein C OS=Arabidopsis thaliana OX=3702 GN=At4g0312... [more]
C5XZK63.9e-4959.66U1 small nuclear ribonucleoprotein C-1 OS=Sorghum bicolor OX=4558 GN=Sb04g009880... [more]
Q033691.0e-1744.44U1 small nuclear ribonucleoprotein C OS=Xenopus laevis OX=8355 GN=snrpc PE=2 SV=... [more]
BLAST of Moc09g07600 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DB315.7e-10499.49U1 small nuclear ribonucleoprotein C OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A0A0K5151.6e-9089.95U1 small nuclear ribonucleoprotein C OS=Cucumis sativus OX=3659 GN=Csa_7G390140 ... [more]
A0A5A7UNW22.7e-9089.45U1 small nuclear ribonucleoprotein C OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A1S3BS922.7e-9089.45U1 small nuclear ribonucleoprotein C OS=Cucumis melo OX=3656 GN=LOC103492724 PE=... [more]
A0A6J1GPE62.3e-8989.95U1 small nuclear ribonucleoprotein C OS=Cucurbita moschata OX=3662 GN=LOC1114562... [more]
BLAST of Moc09g07600 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G03120.12.5e-5161.73C2H2 and C2HC zinc fingers superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 1..37
e-value: 1.4E-12
score: 57.8
IPR013085U1-C, C2H2-type zinc fingerPFAMPF06220zf-U1coord: 1..38
e-value: 5.4E-22
score: 77.3
IPR017340U1 small nuclear ribonucleoprotein CPIRSFPIRSF037969U1-Ccoord: 1..196
e-value: 4.2E-40
score: 136.8
IPR017340U1 small nuclear ribonucleoprotein CPANTHERPTHR31148U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..181
IPR017340U1 small nuclear ribonucleoprotein CHAMAPMF_03153U1_Ccoord: 1..166
score: 11.9531
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..61
e-value: 4.6E-30
score: 105.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..154
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..197
NoneNo IPR availablePANTHERPTHR31148:SF2U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Ccoord: 1..181
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 4..36
score: 12.522273
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 1..55

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g07600.1Moc09g07600.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000395 mRNA 5'-splice site recognition
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0071004 U2-type prespliceosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003729 mRNA binding
molecular_function GO:0030627 pre-mRNA 5'-splice site binding
molecular_function GO:0030619 U1 snRNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003676 nucleic acid binding