Moc09g04870 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc09g04870
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionCCR4-NOT transcription complex subunit like
Locationchr9: 3722350 .. 3724141 (+)
RNA-Seq ExpressionMoc09g04870
SyntenyMoc09g04870
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCGATCTTCGCCGCGCCGCCGTCTCAACTGAATCTCTGTTCTCGCCGCTCAAGTTCGAATCGCAGAGCCCTTCTCCCCTCCATTGTCGGCGTTAAACTTCACTCGAGCGGCTTTCCAGTTCCTTCTTTCAGGTATCCGTAGTTTTCTTTTAAGCAGTCCTCTTCGATCCCTCGCATTCAACATATATAATCTCAGAGGATATCCGGATTGTTATATGTTGTAATGAGCATGCTAGCAATGAAGTTCATCTGCTGCTTATTTCTGTAAAGTGAATCCACTTTGATTTTTGTGTTGAAATTGAAATTGAATTATGGTCGCTGCCTTGCTGCTTCCTAATTCATTTCGGCTACTGATGCAAATAGCTTTTACTAGTATTAGGATTTACTTCTCTGGATTTTTCGAAGTTTAAATGCAATGAACCTTTGATTTGATGTCTATTTAAGCAGTCCTTTTCTAATTTCGATCCTTCGCATTCAACATTTAATCTCAGAAGATATCGGGATCATTATATGTTGTAATGAGTATGTTAGCATTGAAGTTTATCAGTAAGTTAATATTGTAAAGTGAATCCACTTTGATTAATGTGTTGAAAATGGAATTGGACGATAGTTGCTGCCTTGCTGGTTTCGAATTGGTTTCGTCTAATGGCGCAAATAGCTTATACTAGTATTAGGATTTACATAACTGAATGTTTCGAAGTTTAAATGCAACGAACCTTTGATTTGGTACCTATTTAAGCAGTCCTATTCGATCCATCGCATTCGGCTCTGGCATATAGAATTTCAGAGGATATCGGGATTATTACATGTTATAATCAGAGCATACTAGCATTGAGTTCATCTGTATCTTAGTTCTATAAAGAGAATCTACTTCGAGTCTTGTCTTGAAAACTGAAAGATCTTATACTACTAATAGGTTTTATTTTAACAATCATCTCCGACGTTTAATATGAATGAATCTTTGATTGGATACTTTCATTAGTTTCTTTGGTGTTCGGACACGATGCGGCTAAGGAAAGTTGTGTTATTTTTTCTGAAAGCTTTTGTCTGATAATTAAGTAGTTATATTTAAGATGATTGGGAAATAAAATTGTTAGATACAACTAGTACTTCTACATTGTGAATTTTCACAATGGTATGATATTGTCCTAGAAGCCTTCATAACTTTACATTTGATTCCACCCAAAAAAGTCTCGTTACAATGAAAATGTTATCCCTAATTTATGTACTATCATATTTTTTCCTTATCTAACGAATACGTGACATTTGTCCCATTTCCAACAAAAATGTGGTGGAAAATACGTCTTCTATCATTATTGGTTCCATATTTACTGTTCTTTATCTGTTTACCATTTTTACTTTGTTCATTTCCTTCATTTACTACTACTTTTTCCTCCCACACACATGACATGCCTTTATATGGGTCAAATCAGTTGCAGAGATTCTTTTTTCACCTGCTACTCTCAGGTATCATAAATCAGAACAAAATCAGAGTATGAAGACTGGTATTCACAACATTGCTACTCAGATGAATGCTTGTGTGATTTCTTTTTTGCAGGTTCAGGCACACCAAAGGATTGGAATTAAGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCATTAAGGAGGAAGCAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTCTCCCTCATAATTTGGATGATCAGTTCTGCTTTCACGTCACTTATAGGACTAGTCGTCAAGCTGATCCCGGCAAAGTAA

mRNA sequence

ATGGCTTCGATCTTCGCCGCGCCGCCGTCTCAACTGAATCTCTGTTCTCGCCGCTCAAGTTCGAATCGCAGAGCCCTTCTCCCCTCCATTGTCGGCGTTAAACTTCACTCGAGCGGCTTTCCAGTTCCTTCTTTCAGGTTCAGGCACACCAAAGGATTGGAATTAAGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCATTAAGGAGGAAGCAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTCTCCCTCATAATTTGGATGATCAGTTCTGCTTTCACGTCACTTATAGGACTAGTCGTCAAGCTGATCCCGGCAAAGTAA

Coding sequence (CDS)

ATGGCTTCGATCTTCGCCGCGCCGCCGTCTCAACTGAATCTCTGTTCTCGCCGCTCAAGTTCGAATCGCAGAGCCCTTCTCCCCTCCATTGTCGGCGTTAAACTTCACTCGAGCGGCTTTCCAGTTCCTTCTTTCAGGTTCAGGCACACCAAAGGATTGGAATTAAGCCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCATTAAGGAGGAAGCAACTGGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTCTCCCTCATAATTTGGATGATCAGTTCTGCTTTCACGTCACTTATAGGACTAGTCGTCAAGCTGATCCCGGCAAAGTAA

Protein sequence

MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSFSITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPAK
Homology
[Close]
BLAST of Moc09g04870 vs. NCBI nr
Match: XP_022145635.1 (uncharacterized protein LOC111015032 [Momordica charantia])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF
Sbjct: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60

Query: 61  SITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPA 120
           SITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPA
Sbjct: 61  SITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPA 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]
BLAST of Moc09g04870 vs. NCBI nr
Match: KAG6593336.1 (hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 171.4 bits (433), Expect = 4.8e-39
Identity = 89/126 (70.63%), Postives = 106/126 (84.13%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MAS+FAAPPSQ++L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGLEL QRSF
Sbjct: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120
           SITASNSSDGNS KE     + TGDAQGPPFLTILAGFFVFSL++W++SS+ T+LI LVV
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLIPAK 122
           KLI  K
Sbjct: 121 KLISTK 126

[Close]
BLAST of Moc09g04870 vs. NCBI nr
Match: XP_023004845.1 (uncharacterized protein LOC111498025 [Cucurbita maxima])

HSP 1 Score: 171.0 bits (432), Expect = 6.2e-39
Identity = 90/126 (71.43%), Postives = 105/126 (83.33%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MAS+FAAPPSQL L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGL+L QRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120
           SITASNSSDGNS KEE      TGDAQGPPFLTILAGFFVFSL++W++SS+ T+LI LVV
Sbjct: 61  SITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLIPAK 122
           KLI  K
Sbjct: 121 KLISTK 126

[Close]
BLAST of Moc09g04870 vs. NCBI nr
Match: KAG7025683.1 (hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 88/126 (69.84%), Postives = 105/126 (83.33%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MAS+FAAPPSQ++L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGLEL QRSF
Sbjct: 1   MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120
           SITASNSSDGNS KE     + T DAQGPPFLTILAGFFVFSL++W++SS+ T+LI LVV
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLIPAK 122
           KLI  K
Sbjct: 121 KLISTK 126

[Close]
BLAST of Moc09g04870 vs. NCBI nr
Match: XP_022959607.1 (uncharacterized protein LOC111460632 [Cucurbita moschata])

HSP 1 Score: 167.9 bits (424), Expect = 5.3e-38
Identity = 88/126 (69.84%), Postives = 104/126 (82.54%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MAS+FAAPPSQL L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGL+L QRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120
           SITASNSSDGNS KE     + TGDAQGPPFLTILAGFFVFSL++W++SS+ T+LI L V
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALAV 120

Query: 121 KLIPAK 122
           KLI  K
Sbjct: 121 KLISTK 126

[Close]
BLAST of Moc09g04870 vs. ExPASy TrEMBL
Match: A0A6J1CV15 (uncharacterized protein LOC111015032 OS=Momordica charantia OX=3673 GN=LOC111015032 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.1e-57
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF
Sbjct: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60

Query: 61  SITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPA 120
           SITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPA
Sbjct: 61  SITASNSSDGNSIKEEATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVVKLIPA 120

Query: 121 K 122
           K
Sbjct: 121 K 121

[Close]
BLAST of Moc09g04870 vs. ExPASy TrEMBL
Match: A0A6J1KVQ7 (uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 3.0e-39
Identity = 90/126 (71.43%), Postives = 105/126 (83.33%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MAS+FAAPPSQL L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGL+L QRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120
           SITASNSSDGNS KEE      TGDAQGPPFLTILAGFFVFSL++W++SS+ T+LI LVV
Sbjct: 61  SITASNSSDGNSTKEENDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALVV 120

Query: 121 KLIPAK 122
           KLI  K
Sbjct: 121 KLISTK 126

[Close]
BLAST of Moc09g04870 vs. ExPASy TrEMBL
Match: A0A6J1H506 (uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC111460632 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.6e-38
Identity = 88/126 (69.84%), Postives = 104/126 (82.54%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MAS+FAAPPSQL L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGL+L QRSF
Sbjct: 1   MASVFAAPPSQLVLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLKLRQRSF 60

Query: 61  SITASNSSDGNSIKE-----EATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120
           SITASNSSDGNS KE     + TGDAQGPPFLTILAGFFVFSL++W++SS+ T+LI L V
Sbjct: 61  SITASNSSDGNSTKEKNDGSKVTGDAQGPPFLTILAGFFVFSLVLWIVSSSVTTLIALAV 120

Query: 121 KLIPAK 122
           KLI  K
Sbjct: 121 KLISTK 126

[Close]
BLAST of Moc09g04870 vs. ExPASy TrEMBL
Match: A0A6J1GPL5 (uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC111455984 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.7e-37
Identity = 90/126 (71.43%), Postives = 103/126 (81.75%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MASIF+APPS+LNL SR S  +   L  SI G++ HS+ FP+PSFR+R+TKGLEL QRSF
Sbjct: 1   MASIFSAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSF 60

Query: 61  SITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 120
           SITASNSSDGNSIKEE     A+ DAQGPPFLTILAG FVFSL++WM+SSA TSLIGLVV
Sbjct: 61  SITASNSSDGNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

Query: 121 KLIPAK 122
           KLI  K
Sbjct: 121 KLISTK 126

[Close]
BLAST of Moc09g04870 vs. ExPASy TrEMBL
Match: A0A6J1JUC2 (uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 3.1e-36
Identity = 89/123 (72.36%), Postives = 102/123 (82.93%), Query Frame = 0 

Query: 1   MASIFAAPPSQLNLCSRRSSSNRRALLPSIVGVKLHSSGFPVPSFRFRHTKGLELSQRSF 60
           MASIFAAPPS+LNL SR S  +   L  SI G++ HS+ FP+PSFR+R+TKGLELS RSF
Sbjct: 1   MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELSPRSF 60

Query: 61  SITASNSSDGNSIKEE-----ATGDAQGPPFLTILAGFFVFSLIIWMISSAFTSLIGLVV 119
           SITASNSSDGNSI+EE     A+ DAQGPPFLTILAG FVFSL++WM+SSA TSLIGLVV
Sbjct: 61  SITASNSSDGNSIEEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSSAATSLIGLVV 120

The following BLAST results are available for this feature:
BLAST of Moc09g04870 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022145635.11.5e-56100.00uncharacterized protein LOC111015032 [Momordica charantia][more]
KAG6593336.14.8e-3970.63hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023004845.16.2e-3971.43uncharacterized protein LOC111498025 [Cucurbita maxima][more]
KAG7025683.12.4e-3869.84hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_022959607.15.3e-3869.84uncharacterized protein LOC111460632 [Cucurbita moschata][more]
BLAST of Moc09g04870 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc09g04870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CV157.1e-57100.00uncharacterized protein LOC111015032 OS=Momordica charantia OX=3673 GN=LOC111015... [more]
A0A6J1KVQ73.0e-3971.43uncharacterized protein LOC111498025 OS=Cucurbita maxima OX=3661 GN=LOC111498025... [more]
A0A6J1H5062.6e-3869.84uncharacterized protein LOC111460632 OS=Cucurbita moschata OX=3662 GN=LOC1114606... [more]
A0A6J1GPL53.7e-3771.43uncharacterized protein LOC111455984 OS=Cucurbita moschata OX=3662 GN=LOC1114559... [more]
A0A6J1JUC23.1e-3672.36uncharacterized protein LOC111488436 OS=Cucurbita maxima OX=3661 GN=LOC111488436... [more]
BLAST of Moc09g04870 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc09g04870.1Moc09g04870.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane