Moc08g43280 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g43280
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr8: 33248391 .. 33251773 (+)
RNA-Seq Expression	Moc08g43280
Synteny	Moc08g43280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGGAGAAGGACAACGCCGCCGTCGCACCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCATTGGTCTCGAGATTGTCCCTCCTCCGCTCCTAATCCCGATTCCACTTTCAATTCTTCCAGACCTTCTTCCTCTTCTGGCGCTGCTGCTGCTGCGCCTTCGAAAGTTGCAGAGAAGCCCAAGAAGGCGCCCAGAACCAGGCCCAAGCTCACTCCCGAGCTACTTCTCTCTGAGGATGGCCTCGGTTACGTTCTTCGCCATTTTCCTCGCGCTTTCAAATATCGCGGCCGTGGACACGAGGTTAAGTTTCTCCATCCGATTCCTTTCCAATCCTTGCGAACGTTCTGGTATTTATGGGGTTTTGTTTGAATTATCTCAACATTTCTGCTCAAGGAATAAGAGGTTTGGAAAATCATTACTACTCTTCTGAGTCTGGCGCGTTTTTTAGCTGTCTTTGTTATGAACGTGGCTGGTGTAGGAAATTATGCGGTAGTTTGTAATTTCACTTCAGTTTACTGTCTTATTAGTAAAAGTTTGTAGTTGTTATATTCCTCTGATTTGCATTGACATATATATGATTAGAAACATTTTGATTTGCGAAGAAAGAGTTCTTTTGGATTTTTTTCGAGAGAGATCAGGCTGTTGGGAGCCAACCAAAAATCCCGCTGAACATCTGTCTTAGAGGGAACTAAAAGCAAAACTGTGAGAGACTCAAAATAGACGATATCACATCTTAATTTACCTTGATAGTTCAGTAGTAGTTTACCAGTTTGAAAGCTTGTTTCCACTCAATTATAATCATGTGTATTTCATCAACGCTGTGTTGTCTTCCTCTCATCCACTATCATTTTCTAATGATTTGATTCTTATGCTGATTGAATTATGCTTTTGATGGTCGTTTTGCAGGTCAGTGATTTGGAAAACTTTATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTACTACTCCTTCGAACATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTTAAGGTAAAAAATGTGCATGACCCCTGACTTTATATTATCTTTTATAATGAAGGTATAACAAAGGTGTACATATATGGCTGACTGGATTGGTATGTGTGTCAAACTACACAAGTTTTGCCTAATAACATAGCTAGCATCTGAACTAAACGCACTGCTCTTAGGAAACCATTGCACCAAAATAGACAGTGGATTATATTATGGTGCGGTATGCATAACAAACTCTAACTCTGTAATGTTTCAAATTAATCCTTGCCTATCGAACCAAATCAATTTTGAGCAAATTTGCTTATTATATGACATCTATCTCGCCTTCTTTGAAATATTTTTGAGCAGATGAGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGCGAGTCACCCACTGTAAATGAAGACGTCAATAATGAAACAGGTAAATTCTAGTACTCTCATTTATGAAAAGAGACGCATATCATTATTATCATAAGCTGTTTGATCGTGATGGAACTAGTGCAGCTATATGGTATCAAATTTTATAGTGTTTAGCAAGATGCGTGTTGTCCTCTAAGATGAATCCTAATTCTTCTTAAGCGCTATAATTATTTGACTCTAGCTCTATTTAGAAAATTCAAATTTGATTTAGATGATAAACTTGTAGTAAATTGAATTGTCAGAATAAATAAGCAAGAAATAATTATAAAAGAGAATAAATTAAAATTGAACATTTAATGCATCAATTTGGCGTTATGGCTCAACCTATCTAAGCTATCTAATAAGCTGGTTCGGATCAGTGAACTTAATTTTGCTCAATGATGGAAAATTATTGAACAGTTGTAGGTGGCCTTTGTTTTTAGCCCTTACTAACCTCCACCTACCATCACAGTTACTACCACCTCTATCACCTTCTCATCTTTCTTTCTTATATATACATATATTCGTACGCAGTTGTCAAAGGCTTTTTGATTAAGGCCATGTGCTTTTAAGTCATATTATGGTTTGATTTAAGCTATGAGATTTTAGGGGTTTGTTGTGTACACATTTGCCAAATGGAGCTTGGTTCTTAATATTTCCTCGTGCATGAATATATGTGACCCTCGCATGCTCAGTTTATTTCACACCAAGTAGTCAAGTGCTTGGAATGGTTATAACTTATATTGGATTGTGGTACATCCAAAGTTCTAGTAGTCATTATGTTGCACTTGTAATTTGGAAAAAATATATTGTGGTTTATGTTCTTTTTCATGGTTCTTAGTCAGGGCAACTGCTGCAAAGTTTTGCTTGTATTTATAGATTTTATGCTAATTTTCAGATTTTAGGGTTGGGGAATGGTTTGATATGTGTACTTGGCTCTGCGTATTTAGAAATGCAACCTAAAGAGTAAAATCCGATCCATTTGAATGTTTTTTTCTCTCATGTTCTAAACTATAATCTTAAAATATTCTGCGACTCTATAACTAATCATTATTTGGGTGTATCCCTTTTCTTGAACCTCAAACCCGTCTTCTAATGTTTGCAGAAGCCAAAGACTCGGAGGACTTATTTGATAATCCGGAAGAGGCTTCTTTGAGGAATAATGGTACTGATGACATGGAAGAAGACATGCTTCAGGAAATTTACGAGAAAGCTACTGAAGTAATGTCTTTCTCTGTTCACTATTTCTTTTAAAGCTTGGTTTACTTTCCATCCCTGCGATTGATATTGAAGTAGTTTTAGAAGGAAACCATCCCAATCCTTGAACTGAGTAAGGAGGAAATTTTACCATGAATCATAAACGTAGGTCTTAGGAAGTCATAATGAAGCAAACTAGTGCTTCCTCATTTCAGTCCAAAATTTTGTAGTTCAATTTTCCAAGTTGTCAGGTTGATTTTTTTATAATATTTTGATGCCCCATTGGATTCTACTTTGCTCTACAACTTATTCTATGAGGTGATCACTTTCTAATTATTGCTATATCTTTATATTCGGTCATGGAATAGTCATTCAATGACACGAAAAGAAAATGCTTGTTTTAGTATTGTTCTATAGATTGTACTACTGTGTCCTTAAGTTCTAAAGTAACTGTTGATGTAGTAGAAGATCAAGGTCTACTAAAATGAGACATCTTCCTGTGTTCTCTCTAATTTAACGATGGGTTTTGCTAACCGTGATCGTAGGAGCCTCTGCAGAACTTACAAAGTGATTCCCACACCATTGGGGAAACTATGGAAGGTGTGAGCAACCAAGAGCCAAATAGAAGCAATTCAAGTGAAACTCAGATCACAGAGGAACAGAGAGTTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAAAGGGCTGCAAGCAAGGCCCGCTCCTTGCAGACTGCCTGA

mRNA sequence

ATGGAGAAGGAGAAGGACAACGCCGCCGTCGCACCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCATTGGTCTCGAGATTGTCCCTCCTCCGCTCCTAATCCCGATTCCACTTTCAATTCTTCCAGACCTTCTTCCTCTTCTGGCGCTGCTGCTGCTGCGCCTTCGAAAGTTGCAGAGAAGCCCAAGAAGGCGCCCAGAACCAGGCCCAAGCTCACTCCCGAGCTACTTCTCTCTGAGGATGGCCTCGGTTACGTTCTTCGCCATTTTCCTCGCGCTTTCAAATATCGCGGCCGTGGACACGAGGTCAGTGATTTGGAAAACTTTATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTACTACTCCTTCGAACATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTTAAGATGAGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGCGAGTCACCCACTGTAAATGAAGACGTCAATAATGAAACAGAAGCCAAAGACTCGGAGGACTTATTTGATAATCCGGAAGAGGCTTCTTTGAGGAATAATGGTACTGATGACATGGAAGAAGACATGCTTCAGGAAATTTACGAGAAAGCTACTGAAGAGCCTCTGCAGAACTTACAAAGTGATTCCCACACCATTGGGGAAACTATGGAAGGTGTGAGCAACCAAGAGCCAAATAGAAGCAATTCAAGTGAAACTCAGATCACAGAGGAACAGAGAGTTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAAAGGGCTGCAAGCAAGGCCCGCTCCTTGCAGACTGCCTGA

Coding sequence (CDS)

ATGGAGAAGGAGAAGGACAACGCCGCCGTCGCACCGCCGACGGGATGCTACAAGTGCGGGAAGCCGGGCCATTGGTCTCGAGATTGTCCCTCCTCCGCTCCTAATCCCGATTCCACTTTCAATTCTTCCAGACCTTCTTCCTCTTCTGGCGCTGCTGCTGCTGCGCCTTCGAAAGTTGCAGAGAAGCCCAAGAAGGCGCCCAGAACCAGGCCCAAGCTCACTCCCGAGCTACTTCTCTCTGAGGATGGCCTCGGTTACGTTCTTCGCCATTTTCCTCGCGCTTTCAAATATCGCGGCCGTGGACACGAGGTCAGTGATTTGGAAAACTTTATTGGCTTATACAGGGAATGGCATTCTCATATACTCCCTTACTACTCCTTCGAACATTTTGTACATAAGGTGGAACAAGTAGCTGCTACGAAACGTGTTAAGATGAGTCTTGGAGAACTAAGAGAGAGAGTTGCCAGGGGAGGGGATCCTACAAAGTGGCGCGAGTCACCCACTGTAAATGAAGACGTCAATAATGAAACAGAAGCCAAAGACTCGGAGGACTTATTTGATAATCCGGAAGAGGCTTCTTTGAGGAATAATGGTACTGATGACATGGAAGAAGACATGCTTCAGGAAATTTACGAGAAAGCTACTGAAGAGCCTCTGCAGAACTTACAAAGTGATTCCCACACCATTGGGGAAACTATGGAAGGTGTGAGCAACCAAGAGCCAAATAGAAGCAATTCAAGTGAAACTCAGATCACAGAGGAACAGAGAGTTCGAATGGAAGCAAACAGGTTGAAGGCATTAGAAAGGGCTGCAAGCAAGGCCCGCTCCTTGCAGACTGCCTGA

Protein sequence

MEKEKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVNEDVNNETEAKDSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQEPNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA

Homology

[Close]

BLAST of Moc08g43280 vs. NCBI nr
Match: XP_022143008.1 (TIMELESS-interacting protein [Momordica charantia])

HSP 1 Score: 540.8 bits (1392), Expect = 6.9e-150
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 1   MEKEKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVA 60
           MEKEKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVA
Sbjct: 1   MEKEKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVA 60

Query: 61  EKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSH 120
           EKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSH
Sbjct: 61  EKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSH 120

Query: 121 ILPYYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVNEDVNNETEAK 180
           ILPYYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVNEDVNNETEAK
Sbjct: 121 ILPYYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVNEDVNNETEAK 180

Query: 181 DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQE 240
           DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQE
Sbjct: 181 DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQE 240

Query: 241 PNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA 281
           PNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA
Sbjct: 241 PNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA 280

[Close]

BLAST of Moc08g43280 vs. NCBI nr
Match: KAG6599343.1 (TIMELESS-interacting protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030333.1 TIMELESS-interacting protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 443.7 bits (1140), Expect = 1.2e-120
Identity = 238/281 (84.70%), Postives = 250/281 (88.97%), Query Frame = 0


Query: 4   EKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKP 63
           +KDNAAVA PTGCYKCGKPGHWSRDCPSSAPNP    NSSRP SSS  A AAPSKVAEKP
Sbjct: 2   DKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP----NSSRPPSSS--APAAPSKVAEKP 61

Query: 64  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILP 123
           KKAPR RPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHE+SDLEN IGLYREWHSHILP
Sbjct: 62  KKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILP 121

Query: 124 YYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVN---EDVNNETEAK 183
           YY FEHFVHKVEQVAATKRVKM LGELRE+VARGGDPTKWRESP VN   +D+NNE EAK
Sbjct: 122 YYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAK 181

Query: 184 DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKAT-EEPLQNLQSDSHTIGETMEGVSNQ 243
           DSE LFDN EEAS +NNG DD+EEDMLQE+YEKAT EEPL NLQSDS TIGETMEGV NQ
Sbjct: 182 DSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ 241

Query: 244 EPNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA 281
           EPN SNS+ET +TE+QR RMEANRLKALERAA+KARS  TA
Sbjct: 242 EPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 276

[Close]

BLAST of Moc08g43280 vs. NCBI nr
Match: XP_008456510.1 (PREDICTED: TIMELESS-interacting protein [Cucumis melo] >KAA0063565.1 TIMELESS-interacting protein [Cucumis melo var. makuwa] >TYJ97891.1 TIMELESS-interacting protein [Cucumis melo var. makuwa])

HSP 1 Score: 443.4 bits (1139), Expect = 1.5e-120
Identity = 237/283 (83.75%), Postives = 253/283 (89.40%), Query Frame = 0


Query: 4   EKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKP 63
           +KDN A+A PTGCYKCGKPGHWSRDCPSSAPNP+ T NSS+P  SS  A AAPSK  EKP
Sbjct: 2   DKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSS--APAAPSKAVEKP 61

Query: 64  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILP 123
           KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHE+SDLEN IGLYREWHSHILP
Sbjct: 62  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILP 121

Query: 124 YYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVN--EDVNNETEAKD 183
           YYSFEHFVHKVEQVAATKRVKM LGELRERVARGGDPTKWRE+P +N  +DVNNE EAKD
Sbjct: 122 YYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDVNNEKEAKD 181

Query: 184 SEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQEP 243
            E +FDNPEEASLRNNG DD+EEDMLQE+YEKATEEPLQN QSDS T G TMEGV+NQEP
Sbjct: 182 PEGVFDNPEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTTGGTMEGVANQEP 241

Query: 244 NR----SNSSET-QITEEQRVRMEANRLKALERAASKARSLQT 280
           N+    SNSSET ++TEEQRVRMEANRLKALERAA+KARSL T
Sbjct: 242 NQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLAT 282

[Close]

BLAST of Moc08g43280 vs. NCBI nr
Match: XP_004139395.1 (TIMELESS-interacting protein [Cucumis sativus] >KGN60764.1 hypothetical protein Csa_019321 [Cucumis sativus])

HSP 1 Score: 440.7 bits (1132), Expect = 9.7e-120
Identity = 234/280 (83.57%), Postives = 250/280 (89.29%), Query Frame = 0


Query: 4   EKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKP 63
           EKDN AV  PTGC+KCGKPGHWSRDCPSSAPNP+ T NSS PS SS    AAPSK  EKP
Sbjct: 2   EKDNNAVPAPTGCFKCGKPGHWSRDCPSSAPNPNPTSNSSTPSFSS--PPAAPSKAVEKP 61

Query: 64  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILP 123
           KKAPRTRPKLTPELLLS+DGLGYVLRHFPRAFKYRGRGHE++DLEN IGLYREWHSHILP
Sbjct: 62  KKAPRTRPKLTPELLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILP 121

Query: 124 YYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVN---EDVNNETEAK 183
           YYSFEHFVHKVEQVAATKRVKM LGELRERVARGGDPTKWRE+P +N   +DVNNE EAK
Sbjct: 122 YYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDDVNNEKEAK 181

Query: 184 DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQE 243
           D +D+FDN EEASLRNNG DD+EEDMLQE+YEKATEEPLQN QSDS TIG TMEGV+NQE
Sbjct: 182 DPDDVFDNQEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTIGGTMEGVANQE 241

Query: 244 PNRSNSSET-QITEEQRVRMEANRLKALERAASKARSLQT 280
           P  SNSSET ++TEEQRVRMEANRLKALERAA+KARSL T
Sbjct: 242 PKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPT 279

[Close]

BLAST of Moc08g43280 vs. NCBI nr
Match: XP_038889611.1 (TIMELESS-interacting protein [Benincasa hispida])

HSP 1 Score: 437.6 bits (1124), Expect = 8.2e-119
Identity = 237/292 (81.16%), Postives = 253/292 (86.64%), Query Frame = 0


Query: 4   EKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSS----------RPSSSS---- 63
           EKDNAAVA PTGCYKCGKPGHWSRDCPSSAPNP+ T NSS           P+S+S    
Sbjct: 2   EKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSSDCPSSAPNPNPTSNSSRPP 61

Query: 64  -GAAAAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLE 123
             +A AAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPR FKYRGRGHE+SDL 
Sbjct: 62  FSSAPAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRVFKYRGRGHEISDLG 121

Query: 124 NFIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPT 183
           N IGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKM LGELRERVARGGDPTKWRE+P 
Sbjct: 122 NLIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPI 181

Query: 184 VN-EDVNNETEAKDSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSH 243
           +N +DVNNE EAKD E +FDN EEA LRNNG DD+EEDMLQE+YEKATEEP QN+QSDS 
Sbjct: 182 LNDDDVNNEKEAKDPEGIFDNQEEA-LRNNGADDIEEDMLQEVYEKATEEPSQNVQSDSF 241

Query: 244 TIGETMEGVSNQEPNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQT 280
           TIGET+EGV+NQEP  SNSSETQ+TEEQR RMEANRLKALERAA+KARSL T
Sbjct: 242 TIGETIEGVANQEPKISNSSETQLTEEQRGRMEANRLKALERAAAKARSLPT 292

[Close]

BLAST of Moc08g43280 vs. ExPASy Swiss-Prot
Match: Q91WA1 (TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 7.5e-06
Identity = 71/248 (28.63%), Postives = 96/248 (38.71%), Query Frame = 0


Query: 30  PSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLR 89
           P ++P  D     + P   SG+    P K     +   R  PKL    L SE GL   LR
Sbjct: 28  PPASPERDPA--DAEPEEGSGSGVPVPPK-----RTVKRNLPKLDATRLTSERGLP-ALR 87

Query: 90  HFPRAFKYRGRGHEVSDLENFIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMSLGE 149
           H     K++G+GHE  DL+  I     W   + P   FE F+ +VE +   K V+  L  
Sbjct: 88  HVFDKTKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVENLGNKKEVQTCLKR 147

Query: 150 LRERVARGGDPTKWRESPTVNED-VNNETEAKDSEDLFDNPEEASLRNNGTDDMEEDMLQ 209
           +R             + P V+ED VNN  E  ++              NG D        
Sbjct: 148 IR------------LDLPIVHEDFVNNNDEVGEA--------------NGPD-------- 207

Query: 210 EIYEKATEEPLQNLQSDSHTIGETMEGVSNQEPNRSNSSETQITEEQRVRMEANRLKALE 269
                   +P     SDS             EP RS      +TEEQ+ R+E N+  ALE
Sbjct: 208 --VSATGFDPFLTSSSDSRKFA--------SEPTRS------LTEEQQQRIERNKQLALE 217

Query: 270 RAASKARS 277
           R  +K  S
Sbjct: 268 RRQAKLLS 217

[Close]

BLAST of Moc08g43280 vs. ExPASy Swiss-Prot
Match: Q5F416 (TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 8.3e-05
Identity = 71/262 (27.10%), Postives = 100/262 (38.17%), Query Frame = 0


Query: 12  PPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKPKKAPRTRP 71
           PPT       PG    +   +  +PD    S    SSS A            K   R+ P
Sbjct: 30  PPT------SPGRGDAEWAQANGDPDGNQQSETKDSSSAAR-----------KAVKRSIP 89

Query: 72  KLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILPYYSFEHFV 131
           KL    L+SE GL   LRH     K++G+GHE  DL+  +     W   + P   F+ F+
Sbjct: 90  KLDANRLVSERGLP-ALRHMFDNVKFKGKGHEAEDLKTLLRHMEHWAHRLFPKLQFDDFI 149

Query: 132 HKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVNEDVNNETEAKDSEDLFDNPEE 191
            +VE +   K V+  L  +R             + P ++ED             F   E 
Sbjct: 150 DRVESLGNKKEVQTCLKRIR------------LDLPILHED-------------FTANEG 209

Query: 192 ASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQEPNRSNSSETQI 251
               +NG D             ATEE    + S S  +GE             +   T +
Sbjct: 210 GGGESNGLD------------MATEE----VHSFSGNVGEL-----------DSLPGTTL 221

Query: 252 TEEQRVRMEANRLKALERAASK 274
           TEEQ+ R++ NR  ALER  +K
Sbjct: 270 TEEQQQRIKRNRQLALERRQAK 221

[Close]

BLAST of Moc08g43280 vs. ExPASy Swiss-Prot
Match: Q3ZCC4 (TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-04
Identity = 63/242 (26.03%), Postives = 96/242 (39.67%), Query Frame = 0


Query: 30  PSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLR 89
           P+S    D         S  GA    P K     +   R  PKL  E L+SE GL   LR
Sbjct: 29  PASPGREDGEGAEPEEESGRGAPVPVPPK-----RTVKRNIPKLNAERLISERGLP-ALR 88

Query: 90  HFPRAFKYRGRGHEVSDLENFIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMSLGE 149
           H     K++G+GHE  DL+  I     W   + P   FE F+ +VE +   K V+  L  
Sbjct: 89  HVFEKAKFKGKGHEAEDLKTLIRHMEHWAHRLFPKLQFEDFIDRVECLGNKKEVQTCLKR 148

Query: 150 LRERVARGGDPTKWRESPTVNEDV---NNETEAKDSEDL------------FDNPEEASL 209
           +R             + P ++ED    N+E E  +  D+            + + E AS 
Sbjct: 149 IR------------LDLPILHEDFVSNNDEVEENNGHDVTATELDHFLTNSYGSVEFASE 208

Query: 210 RNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQEPNRSNSSETQITEE 257
            +    + E+  ++   + A E     L S+S ++G  +   S   P+   S      EE
Sbjct: 209 SSRSLTEEEQQRIERNKQLALERRQAKLLSNSQSLGNDL---SVNTPSTQTSEAGSTGEE 249

[Close]

BLAST of Moc08g43280 vs. ExPASy Swiss-Prot
Match: Q9BVW5 (TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2)

HSP 1 Score: 47.0 bits (110), Expect = 4.1e-04
Identity = 61/235 (25.96%), Postives = 98/235 (41.70%), Query Frame = 0


Query: 30  PSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKPKKAPRTRPKLTPELLLSEDGLGYVLR 89
           P+S    D         S +GA    P K     +   R  PKL  + L+SE GL   LR
Sbjct: 29  PASPERQDGEGTEPDEESGNGAPVRVPPK-----RTVKRNIPKLDAQRLISERGLP-ALR 88

Query: 90  HFPRAFKYRGRGHEVSDLENFIGLYREWHSHILPYYSFEHFVHKVEQVAATKRVKMSLGE 149
           H     K++G+GHE  DL+  I     W   + P   FE F+ +VE + + K V+  L  
Sbjct: 89  HVFDKAKFKGKGHEAEDLKMLIRHMEHWAHRLFPKLQFEDFIDRVEYLGSKKEVQTCLKR 148

Query: 150 LRERVARGGDPTKWRESPTVNEDV--NNETEAKDSE------DLFDNPEEASLRNNGTDD 209
           +R  +     P    +  + N++V  NNE +   +E      +L ++   AS  +    +
Sbjct: 149 IRLDL-----PILHEDFVSNNDEVAENNEHDVTSTELDPFLTNLSESEMFASELSRSLTE 208

Query: 210 MEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQEPNRSNSSETQITEEQR 257
            ++  ++   + A E     L S+S T+G  M       P      E    E+Q+
Sbjct: 209 EQQQRIERNKQLALERRQAKLLSNSQTLGNDM---LMNTPRAHTVEEVNTDEDQK 249

[Close]

BLAST of Moc08g43280 vs. ExPASy TrEMBL
Match: A0A6J1CPN9 (TIMELESS-interacting protein OS=Momordica charantia OX=3673 GN=LOC111012996 PE=3 SV=1)

HSP 1 Score: 540.8 bits (1392), Expect = 3.3e-150
Identity = 280/280 (100.00%), Postives = 280/280 (100.00%), Query Frame = 0


Query: 1   MEKEKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVA 60
           MEKEKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVA
Sbjct: 1   MEKEKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVA 60

Query: 61  EKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSH 120
           EKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSH
Sbjct: 61  EKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSH 120

Query: 121 ILPYYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVNEDVNNETEAK 180
           ILPYYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVNEDVNNETEAK
Sbjct: 121 ILPYYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVNEDVNNETEAK 180

Query: 181 DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQE 240
           DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQE
Sbjct: 181 DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQE 240

Query: 241 PNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA 281
           PNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA
Sbjct: 241 PNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA 280

[Close]

BLAST of Moc08g43280 vs. ExPASy TrEMBL
Match: A0A5D3BGW4 (TIMELESS-interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001060 PE=3 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 7.3e-121
Identity = 237/283 (83.75%), Postives = 253/283 (89.40%), Query Frame = 0


Query: 4   EKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKP 63
           +KDN A+A PTGCYKCGKPGHWSRDCPSSAPNP+ T NSS+P  SS  A AAPSK  EKP
Sbjct: 2   DKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSS--APAAPSKAVEKP 61

Query: 64  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILP 123
           KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHE+SDLEN IGLYREWHSHILP
Sbjct: 62  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILP 121

Query: 124 YYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVN--EDVNNETEAKD 183
           YYSFEHFVHKVEQVAATKRVKM LGELRERVARGGDPTKWRE+P +N  +DVNNE EAKD
Sbjct: 122 YYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDVNNEKEAKD 181

Query: 184 SEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQEP 243
            E +FDNPEEASLRNNG DD+EEDMLQE+YEKATEEPLQN QSDS T G TMEGV+NQEP
Sbjct: 182 PEGVFDNPEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTTGGTMEGVANQEP 241

Query: 244 NR----SNSSET-QITEEQRVRMEANRLKALERAASKARSLQT 280
           N+    SNSSET ++TEEQRVRMEANRLKALERAA+KARSL T
Sbjct: 242 NQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLAT 282

[Close]

BLAST of Moc08g43280 vs. ExPASy TrEMBL
Match: A0A1S3C4P4 (TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=3 SV=1)

HSP 1 Score: 443.4 bits (1139), Expect = 7.3e-121
Identity = 237/283 (83.75%), Postives = 253/283 (89.40%), Query Frame = 0


Query: 4   EKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKP 63
           +KDN A+A PTGCYKCGKPGHWSRDCPSSAPNP+ T NSS+P  SS  A AAPSK  EKP
Sbjct: 2   DKDNNAIAAPTGCYKCGKPGHWSRDCPSSAPNPNPTSNSSKPPFSS--APAAPSKAVEKP 61

Query: 64  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILP 123
           KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHE+SDLEN IGLYREWHSHILP
Sbjct: 62  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILP 121

Query: 124 YYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVN--EDVNNETEAKD 183
           YYSFEHFVHKVEQVAATKRVKM LGELRERVARGGDPTKWRE+P +N  +DVNNE EAKD
Sbjct: 122 YYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDVNNEKEAKD 181

Query: 184 SEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQEP 243
            E +FDNPEEASLRNNG DD+EEDMLQE+YEKATEEPLQN QSDS T G TMEGV+NQEP
Sbjct: 182 PEGVFDNPEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTTGGTMEGVANQEP 241

Query: 244 NR----SNSSET-QITEEQRVRMEANRLKALERAASKARSLQT 280
           N+    SNSSET ++TEEQRVRMEANRLKALERAA+KARSL T
Sbjct: 242 NQEPKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLAT 282

[Close]

BLAST of Moc08g43280 vs. ExPASy TrEMBL
Match: A0A0A0LI96 (CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 PE=3 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 4.7e-120
Identity = 234/280 (83.57%), Postives = 250/280 (89.29%), Query Frame = 0


Query: 4   EKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKP 63
           EKDN AV  PTGC+KCGKPGHWSRDCPSSAPNP+ T NSS PS SS    AAPSK  EKP
Sbjct: 2   EKDNNAVPAPTGCFKCGKPGHWSRDCPSSAPNPNPTSNSSTPSFSS--PPAAPSKAVEKP 61

Query: 64  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILP 123
           KKAPRTRPKLTPELLLS+DGLGYVLRHFPRAFKYRGRGHE++DLEN IGLYREWHSHILP
Sbjct: 62  KKAPRTRPKLTPELLLSDDGLGYVLRHFPRAFKYRGRGHEINDLENLIGLYREWHSHILP 121

Query: 124 YYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVN---EDVNNETEAK 183
           YYSFEHFVHKVEQVAATKRVKM LGELRERVARGGDPTKWRE+P +N   +DVNNE EAK
Sbjct: 122 YYSFEHFVHKVEQVAATKRVKMCLGELRERVARGGDPTKWREAPILNDDDDDVNNEKEAK 181

Query: 184 DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPLQNLQSDSHTIGETMEGVSNQE 243
           D +D+FDN EEASLRNNG DD+EEDMLQE+YEKATEEPLQN QSDS TIG TMEGV+NQE
Sbjct: 182 DPDDVFDNQEEASLRNNGADDIEEDMLQEVYEKATEEPLQNEQSDSLTIGGTMEGVANQE 241

Query: 244 PNRSNSSET-QITEEQRVRMEANRLKALERAASKARSLQT 280
           P  SNSSET ++TEEQRVRMEANRLKALERAA+KARSL T
Sbjct: 242 PKTSNSSETSELTEEQRVRMEANRLKALERAAAKARSLPT 279

[Close]

BLAST of Moc08g43280 vs. ExPASy TrEMBL
Match: A0A6J1G4B9 (TIMELESS-interacting protein OS=Cucurbita moschata OX=3662 GN=LOC111450673 PE=3 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 6.8e-119
Identity = 237/282 (84.04%), Postives = 249/282 (88.30%), Query Frame = 0


Query: 4   EKDNAAVAPPTGCYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSGAAAAAPSKVAEKP 63
           +KDNAAVA PTGCYKCGKPGHWSRDCPSSAPNP    NSS P SSS  A AAPSKVAEKP
Sbjct: 2   DKDNAAVAAPTGCYKCGKPGHWSRDCPSSAPNP----NSSSPPSSS--APAAPSKVAEKP 61

Query: 64  KKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSHILP 123
           KKAPR RPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHE+SDLEN IGLYREWHSHILP
Sbjct: 62  KKAPRVRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEISDLENLIGLYREWHSHILP 121

Query: 124 YYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVN---EDVNNETEAK 183
           YY FEHFVHKVEQVAATKRVKM LGELRE+VARGGDPTKWRESP VN   +D+NNE EAK
Sbjct: 122 YYPFEHFVHKVEQVAATKRVKMCLGELREKVARGGDPTKWRESPIVNDADDDINNENEAK 181

Query: 184 DSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKAT-EEPLQNLQSDSHTIGETMEGVSNQ 243
           DSE LFDN EEAS +NNG DD+EEDMLQE+YEKAT EEPL NLQSDS TIGETMEGV NQ
Sbjct: 182 DSEGLFDNQEEASFKNNGADDIEEDMLQEVYEKATEEEPLMNLQSDSFTIGETMEGVVNQ 241

Query: 244 -EPNRSNSSETQITEEQRVRMEANRLKALERAASKARSLQTA 281
            EPN SNS+ET +TE+QR RMEANRLKALERAA+KARS  TA
Sbjct: 242 EEPNTSNSNETLLTEQQRARMEANRLKALERAAAKARSSPTA 277

[Close]

BLAST of Moc08g43280 vs. TAIR 10
Match: AT3G02820.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 226.9 bits (577), Expect = 2.1e-59
Identity = 148/286 (51.75%), Postives = 183/286 (63.99%), Query Frame = 0


Query: 13  PTGCYKCGKPGHWSRDCPSSAP--NPDSTFNSSRP----------SSSSGAAAAAPSKVA 72
           PTGC+KCG+PGHWSRDCPSSAP    +S  +SS P          SSS    + AP   A
Sbjct: 5   PTGCFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNNEFQRSSSKSGTSIAP---A 64

Query: 73  EKPKKAPRTRPKLTPELLLSEDGLGYVLRHFPRAFKYRGRGHEVSDLENFIGLYREWHSH 132
            K  K    RPKLTPELLLSEDGLGYVLR+FP++FKYRGRG EVSDL N I LY EWH+H
Sbjct: 65  PKVTKTRVQRPKLTPELLLSEDGLGYVLRYFPKSFKYRGRGKEVSDLGNLIRLYSEWHTH 124

Query: 133 ILPYYSFEHFVHKVEQVAATKRVKMSLGELRERVARGGDPTKWRESPTVN----EDVNNE 192
           +LPYYSF+HFVHKV+QVA+TKRVK  + ELRERVA G DP K  E    N    +D + +
Sbjct: 125 LLPYYSFDHFVHKVQQVASTKRVKNCINELRERVASGVDPNKLYEKQEENTVPSDDQDMD 184

Query: 193 TEAKDSEDLFDNPEEASLRNNGTDDMEEDMLQEIYEKATEEPL--QNLQSDSHTIGETME 252
             + D E++   P ++   +   D  E+ ML EI++ A++ P   QN+   S     T E
Sbjct: 185 QPSHDEENI---PSKSVDADTNADAFEDSMLNEIFDNASKLPSDEQNMDKSSEL---TEE 244

Query: 253 GVSNQEPNRSNSSE--TQITEEQRVRMEANRLKALERAASKARSLQ 279
             +  E NR  + E    I+EEQRVRMEANRLKALERA ++ +  Q
Sbjct: 245 QRARMEANRLKAMEKAQNISEEQRVRMEANRLKALERAKARLQPNQ 281

[Close]

BLAST of Moc08g43280 vs. TAIR 10
Match: AT3G42860.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 44.7 bits (104), Expect = 1.4e-04
Identity = 20/35 (57.14%), Postives = 24/35 (68.57%), Query Frame = 0


Query: 16  CYKCGKPGHWSRDCPSSAPNPDSTFNSSRPSSSSG 51
           C+KCGKPGHWSRDC + + NP       + SSSSG
Sbjct: 270 CFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSG 304

The following BLAST results are available for this feature:

BLAST of Moc08g43280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143008.1	6.9e-150	100.00	TIMELESS-interacting protein [Momordica charantia]	[more]
KAG6599343.1	1.2e-120	84.70	TIMELESS-interacting protein, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_008456510.1	1.5e-120	83.75	PREDICTED: TIMELESS-interacting protein [Cucumis melo] >KAA0063565.1 TIMELESS-in...	[more]
XP_004139395.1	9.7e-120	83.57	TIMELESS-interacting protein [Cucumis sativus] >KGN60764.1 hypothetical protein ...	[more]
XP_038889611.1	8.2e-119	81.16	TIMELESS-interacting protein [Benincasa hispida]	[more]

BLAST of Moc08g43280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q91WA1	7.5e-06	28.63	TIMELESS-interacting protein OS=Mus musculus OX=10090 GN=Tipin PE=1 SV=2	[more]
Q5F416	8.3e-05	27.10	TIMELESS-interacting protein OS=Gallus gallus OX=9031 GN=TIPIN PE=2 SV=1	[more]
Q3ZCC4	1.8e-04	26.03	TIMELESS-interacting protein OS=Bos taurus OX=9913 GN=TIPIN PE=2 SV=1	[more]
Q9BVW5	4.1e-04	25.96	TIMELESS-interacting protein OS=Homo sapiens OX=9606 GN=TIPIN PE=1 SV=2	[more]

BLAST of Moc08g43280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPN9	3.3e-150	100.00	TIMELESS-interacting protein OS=Momordica charantia OX=3673 GN=LOC111012996 PE=3...	[more]
A0A5D3BGW4	7.3e-121	83.75	TIMELESS-interacting protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C4P4	7.3e-121	83.75	TIMELESS-interacting protein OS=Cucumis melo OX=3656 GN=LOC103496437 PE=3 SV=1	[more]
A0A0A0LI96	4.7e-120	83.57	CCHC-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G009510 P...	[more]
A0A6J1G4B9	6.8e-119	84.04	TIMELESS-interacting protein OS=Cucurbita moschata OX=3662 GN=LOC111450673 PE=3 ...	[more]

BLAST of Moc08g43280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G02820.1	2.1e-59	51.75	zinc knuckle (CCHC-type) family protein	[more]
AT3G42860.1	1.4e-04	57.14	zinc knuckle (CCHC-type) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 15..31 e-value: 7.4E-7 score: 38.8
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 15..31 e-value: 1.5E-8 score: 34.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 16..31 score: 11.581206
IPR012923	Chromosome segregation in meiosis protein 3	PFAM	PF07962	Swi3	coord: 72..153 e-value: 2.4E-22 score: 78.7
None	No IPR available	GENE3D	4.10.60.10		coord: 12..73 e-value: 4.7E-10 score: 41.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 217..252
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 215..256
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..198
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74
None	No IPR available	PANTHER	PTHR13220:SF11	TIMELESS-INTERACTING PROTEIN	coord: 11..278
IPR040038	TIPIN/Csm3/Swi3	PANTHER	PTHR13220	TIMELESS INTERACTING-RELATED	coord: 11..278
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 12..36

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g43280.1	Moc08g43280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0000076	DNA replication checkpoint signaling
biological_process	GO:0043111	replication fork arrest
biological_process	GO:0048478	replication fork protection
cellular_component	GO:0031298	replication fork protection complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003676	nucleic acid binding