Moc08g43130 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g43130
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionVQ domain-containing protein
Locationchr8: 33136606 .. 33142085 (+)
RNA-Seq ExpressionMoc08g43130
SyntenyMoc08g43130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAAGCCCATCAAAGTCAAGTACATTTCGAACCCGATGATGGTGAAGGCGAACTCCGAATCAGAGTTTCGAGAAATAGTTCAGAGGCTTACCGGCCAGAACTCGCCCGATGATGCTTTTGAATCACCAGCTTTTGGAGGAGAAGAAGAATTAAACCATGCTTTTTATCCTCCTCCGCCGTCTACGGCGGTGTCGACGGACCCTAAGGGTTATTATGGCTTGGTCTCCGGTAAGGTCGGCGAGCTCGGCGAAGGCTGCTTCCGGCAAGATGAAATGCAGGGTTTTTCTGGGTTTCAAGCTTCTTGCGTTAATACGTATTGGTGATGATCAAGATGAAGAAGTTGAGGAGTGGTGATGAGCTTTTAGCTTCAAAGAGTAGTTTTTATGGGAATTTTGTATTTAATGTGTGAGAGATAAATTATAGTTGATATAAATTGAATTGTTATACATTTGGTTTAATCTTATATTGAATTTGAATAAGAGGTATAAGGTGAACTAAAAACAAAACCTAATAAATAATTTTTAGTGTTAATTAATTATAACGGAGAATATAAACCACATTCATCTTTGACATATTAACAGATGTCTTATCCACTCCCTATGCTTGAATTATTATAGTACTTAAAATTAGAGAGGTAATATACCTTTTTTTTTTGGGTATAAACCTCCCTTCGTTTCAAAATTATATAATTGAATTCTTAAAGTTTTGTAAATACTCAATTTTACTCGTTACCAGTCAATTTAACATAAATTAGATTTCGCGAACCAGATCATTTGTACAATTTTAAAACCTAGGGACGAAAGAGACTTGTTGTCCAAACCTCTTGGATACAAAAAAAGTTTTTTATCCTAAAATAAAAATAAAAGTGGACATACAATAGTTTGCCATCCAACAATAAAAATAGTTCAACCTAACTGTAAAAATAATTAAATTCAATCACAAAATCAAATGATAAATTTTTACTAAGTAGATTCATTTTTTTAAATATATGAAAATATTACTATTATATACATGTAATTACAAATATAACATTAGGATAACATTTTTAGAAAACTTTATTAATCACTTATTAGCTTCAACGATGACAATCAATGGATAATTAATTAACTATCTTATGACAATCACTAATTAATTTACATGATATTGATTAAAAAAAACTGCAACTGGCCTTTGTATACCAATAAATTTTTCTGTATCTTTTGTTTTATAATTAAATCAAGATCGAAATTACAATTGATTGTCAGCATCAACAAAATGATCCTATGAAACAAAATGTTGAAAAATGGAAAAGAAACTATAAAAAATCAATTAATTGTCTAAAATTTGAATGCAAATATTAAATTATGATCAAAATTTATCTTAAATAATTGTGTTAATATAACCCACCTGAGCATAACTCAAGACACCTGTCTTTAATTAAAAAGTCGTAAGTTCGAATTTTGTCCCTACCTGATGTATACTGAAAAAATAAAATATGTATATATATATATATATATTATGTAACATCCATAAATTTTTCCTTGATGATTAAAGACCAAATTTGAGTGGAAATTTTGAATCTATAAAAAAGAAACAAAAAAATCTACAGCCATATGCAACAAGATCATTTTCTCAGTTACAAACAAATATTAGTTTATTAATTTAGTAGTTCTAAATTATTGATCAATAAAAGAGTACTCTTGGACAGTCAAAGAAGTAAGCCCAAAAAGATTATTATTGTAGTTATTGTATATAATACACAATTAATTTAGCAAAGCTAGTATACCCTCTCTTTGTAGATGGTCCATTAAGCCAAATTATAAAACAAATTGGGTCAAGAGATTATTGTGACTTAATTTAGTGATAATGACTGCATGTAGAGTTTGTGGACCAAAATTTTTGTATATTCTCAATTTTCCACATTCAAATCAATCATCTCATATAGATGCTAACTAAACTTTTTGACTTAGCAATTACAAATTTGTAGTCTTTTTTTTTTCCCTTTACCAAAGTTTATCATAACTTTTAATCCTATATTTAAAATCTTATTTTGGCAATGAATTTTTAGATTTGCTTTATTTTGATCCATATTAACTTTTAAAAGGTCTATTCAATCTTCATATATTTTTTTTTTAATTTCAAAATTAGTTGTTGAACCTTTTAAAATATCTATTTGGTCTTTGATTTTTTAACTAACCATTTTTGTCATCGTTAATACTGCCTAGCTAAACTAATACTCGCCAACTATGAGGCTCCAATGCTCACATTTAGCAAGTAAATACACAAACAACAAATTTATAACATAGTTATTTTGTTTTAAAGTTTAGGGAGTAAAATAAATATTTGAAAGTTTAGAGACAAAAGTGCAATAGAAAGTCAACGACTTTTTAGTCATAATATACATAGTTGGACTATGTTTAGGTTTACAAATAAACTTGAAATTCCTTATTAAAAACTAGAACAAACACATTTAGAAAATCTAAGGACTAAAATTGAATAATTTTAAAATTTCAGGTATCAAAATCTAATTTAAACTTTAAACTTATTTTGGTCTGGTTAGATATTCTATAAAGGATTAAATTTGTCCTGACCCATTAGTTTAAGTACAAAGAGTCTTAAATATCTTATAAATGATTAAATTTGCCTTAATTACAGTTTAAGCTTTTGGTTTATTGATTGTTTAATCATATTTGAAAGGTCTCAAAAACTTCCATATATTTTATCTTGGTATGTACATTTAATTTTTTTTATTTCAATCCTTCAACTTTTCAAATATTATGTATTAATTTGTAATTTTTTCATAAATATTTCGTTGATTTTCACATTCAAATCCATTAATCGTATAGATGCAAACTAAACCTTTAGACCAGCATTGCAAAGTCAATAGTGATCTTTTTTTCCTTATCAATTCATGATTTTTAGTTAGTCATAGTTTGTATAATTGTAGTAGTAAATAAGTGATTAAATATTGACATTAATTTCATAGAGTGATTTTATACGTTTTTCAAAATTTTCGAAAGTACTTTTTTTCATATACAACCAAACAAAAAAAACCAACAATATGTTTTTTGGATTTTTTTTTCATTTTTTTTCATATACTAAAACCCTAATAACCATTTTATTTTGGATTGTTTTGTTTAAAATTAAATTGGAAAACACTACTTTCACCCTCTTTTAAAATTTTTTGGATAATTGTATGTTTTTTTAGAATAAATAATGATGTCTATTTAATATCCAAACATTTTAAAAGTTAATTTACAACTAGTTAATATGTTTGAATTTAACACATTTTTTTTTACCCAACAATATAGGAAGGTATGGATCGAATCTCGTATCTTTCGTCGAATATATTTATTTTATCGATTGAATTATATTTTGATATTTAAACACAATAACTCTTACCTTGATAACTCCGTATCAACATTATCAAAATTATGATTTAATAGGATGAGGACACTATTTTGACTTTTTGACTTTTTTTTTTTTGTTTAAATTTTGGATGATGTTCCATATTTTCCAAGCAAACCAAAATCAAACCAGCTTCTAAGTTTTGTGTGGCTATTTTTACCCAAAAGTTCACGTGTGTTGACCCAACATTATTATGGCTACCTTTAATTTATATTATTAATAAAGGTAAAAGTAGAATCCTTTTTATTTAACTAAAATTTCAAAAGTTGCCTTTGTCTGGTGATATCTCTCTCTAATTTCTCCAAATAATTAATTTTGGGATTTCCCTTAAATTGGTCAAAAAGATGAAATGGGAAAAGTGGACTTAGAGAGTAAAAAATAATTAAAGTAATTAATTAGATGTTAGCCTCGTGGAATGTACGAAGTTAGGTACAATTTTCATCAATCAACCCTTGATTTGGAGATCCTGTTCATGCCCACAATGCAACGGAAGCTAATTAATTTATCAAAATTAAGTGACACGTATAGCATATTGTATTCATTTTTTAAGAAACTTTATTACATTGTCTTTATAGATCACAGTCACTTTATTTTGTATCTACTATGTTACGTCATATCAAATCAACAAAAATTCGTTGGATAGACATGTTACGTCATCATCATTTATTTAATAATAATAACAATACAGAACAATCCTGAACTGATTTGGTGGTAAATAATAAAAAGATTAGAGGGAATGAATTCAAACTACGTGACTACATGCCTAAGATTTAATATCATTAAATAAAAGTTTATGATTTAAAATTAACAATAATTAGAAATTTTCTTAAAAAGTATTTAATTGAAAAATAATTTTAAAAATAAATGAATAAAAGAGGAAAAAATCTTCGTGGAACTTGATCCCCGTGAATTCTCTATAGACATCTCACTCTGATCACTATAAAATTTCGTGGAGATGGAGAATAAAACGGGGGCGAGGACAGAGACGCACGAGAAAAGTCTTCCCCCATCCTCGATTCATCTCACCCCGTCCATGAACATCTCTAACCATAAAGCGATGTTTGAAAACAATACATATGTTTTCAAGAGGGCAAGGTACCAAATACAATACACACGACGTAAAATTTCTATCAAATACACTTCAAAGACACTTACCTAATGATAAAAGACTAGAACTAATTTTGATGGATATATATGTGATGAAATGATCAAAAGATAATCCCAATGGAATTTCATAACTATATTTTTTAGTTTTTGGAAGTGGGATTATGACGTTTAAGCAGACAATTTAGAAGATACAATATTGCCAACAACCCAAGGACCAAAATGAAAAATTGACCAATTGTATAGAAAAAGCAACAGTCCTTTGCTTCATTAATTATACACCAAATAATTTTCCTTAGTCAATTCCATATGCCTTCTTTCTACTACCCCACTCTCCTTCCCCTCTATTTCCTACCACCAAAATACAAACTTCTCTCCAAAGGATCCCATATTAAAGTTTTAATTTTTTTAGACTCGGATCTTGAGATAATGATTAATTCGCTTATATTATAAATCCTGGTTCAGATATCCTGCTCTCAAAGTCTCTTTATATACTTACCTCTCTCCCATCCAAATCTCATTTTTGAACTTACAAGTTTGTAGATAACAACCATCTCTCTCCCATCAAACCCTCTTTTTGTACTTGCAAGTTATAACAGAAATCTGTGTTGTGATGGGAAAGTGTGGAGAGATGAACCAATACAAGAATCATAGCCAGAGCCAAAACACAACCAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGGTGAAAGCAAGCAATGCAATGGACTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCAACTCCGACGCCACGATTTCTCCGACGAACCACCGACCACCTCCCGCCACCCGAGCTCCGTCTTCAACGTTGCTTTTGGAAGCTATCGGAGTCCCAGACGACAGGTCGTCGTTGCTCCATCTAGATGAAGGTGGTTGTTTTGGAAGAGAGAATGATCTTCCCAACACCTTTCTGGGATTTCAATCTTCTTTTTTGTTTCAATAG

mRNA sequence

ATGGAGAAGCCCATCAAAGTCAAGTACATTTCGAACCCGATGATGGTGAAGGCGAACTCCGAATCAGAGTTTCGAGAAATAGTTCAGAGGCTTACCGGCCAGAACTCGCCCGATGATGCTTTTGAATCACCAGCTTTTGGAGGAGAAGAAGAATTAAACCATGCTTTTTATCCTCCTCCGCCGTCTACGGCGGTGTCGACGGACCCTAAGGGTTATTATGGCTTGGTCTCCGGTAAGGTCGGCGAGCTCGGCGAAGGCTGCTTCCGGCAAGATGAAATGCAGGGTTTTTCTGGGTTTCAAGCTTCTTGCTGTGGAGAGATGAACCAATACAAGAATCATAGCCAGAGCCAAAACACAACCAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGGTGAAAGCAAGCAATGCAATGGACTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCAACTCCGACGCCACGATTTCTCCGACGAACCACCGACCACCTCCCGCCACCCGAGCTCCGTCTTCAACGTTGCTTTTGGAAGCTATCGGAGTCCCAGACGACAGGTCGTCGTTGCTCCATCTAGATGAAGGTGGTTGTTTTGGAAGAGAGAATGATCTTCCCAACACCTTTCTGGGATTTCAATCTTCTTTTTTGTTTCAATAG

Coding sequence (CDS)

ATGGAGAAGCCCATCAAAGTCAAGTACATTTCGAACCCGATGATGGTGAAGGCGAACTCCGAATCAGAGTTTCGAGAAATAGTTCAGAGGCTTACCGGCCAGAACTCGCCCGATGATGCTTTTGAATCACCAGCTTTTGGAGGAGAAGAAGAATTAAACCATGCTTTTTATCCTCCTCCGCCGTCTACGGCGGTGTCGACGGACCCTAAGGGTTATTATGGCTTGGTCTCCGGTAAGGTCGGCGAGCTCGGCGAAGGCTGCTTCCGGCAAGATGAAATGCAGGGTTTTTCTGGGTTTCAAGCTTCTTGCTGTGGAGAGATGAACCAATACAAGAATCATAGCCAGAGCCAAAACACAACCAAAGTTCAGAGAAAACCCATAAAAGTAAAGTACATTTCAAGCCCAATGATGGTGAAAGCAAGCAATGCAATGGACTTCAGAGCCATTGTTCAGCAACTCACTGGCTTCAACTCCGACGCCACGATTTCTCCGACGAACCACCGACCACCTCCCGCCACCCGAGCTCCGTCTTCAACGTTGCTTTTGGAAGCTATCGGAGTCCCAGACGACAGGTCGTCGTTGCTCCATCTAGATGAAGGTGGTTGTTTTGGAAGAGAGAATGATCTTCCCAACACCTTTCTGGGATTTCAATCTTCTTTTTTGTTTCAATAG

Protein sequence

MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQASCCGEMNQYKNHSQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFNSDATISPTNHRPPPATRAPSSTLLLEAIGVPDDRSSLLHLDEGGCFGRENDLPNTFLGFQSSFLFQ
Homology
[Close]
BLAST of Moc08g43130 vs. NCBI nr
Match: XP_022142960.1 (sigma factor binding protein 1, chloroplastic-like [Momordica charantia])

HSP 1 Score: 213.4 bits (542), Expect = 2.0e-51
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPP 60
           MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPP
Sbjct: 1   MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPP 60

Query: 61  PSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQASC 104
           PSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQASC
Sbjct: 61  PSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQASC 103

[Close]
BLAST of Moc08g43130 vs. NCBI nr
Match: KAG6599333.1 (hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-26
Identity = 74/127 (58.27%), Postives = 93/127 (73.23%), Query Frame = 0 

Query: 104 CGEMNQYKNHSQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFNSDATIS 163
           CGE N++K+  QSQN TKVQRKPIKVKYISSPMM+KASNA +FRAIVQQLTGF S +   
Sbjct: 4   CGE-NEWKDQKQSQNPTKVQRKPIKVKYISSPMMIKASNAHEFRAIVQQLTGFTSHSPTR 63

Query: 164 PTNHRPPP-ATRAPSSTLL-----LEAIGVPDDRSSLLHLDEGGCF-GRENDLPNTFLGF 223
            +NH+PPP A + PS++ L     +EA+ + D+ SSLL  D+  CF   +N L N F+GF
Sbjct: 64  RSNHKPPPHAAQTPSTSTLHANPQMEALKLSDNMSSLLEFDDEACFVTLDNVLTNNFMGF 123

[Close]
BLAST of Moc08g43130 vs. NCBI nr
Match: KGN60779.1 (hypothetical protein Csa_019238 [Cucumis sativus])

HSP 1 Score: 108.6 bits (270), Expect = 7.0e-20
Identity = 71/137 (51.82%), Postives = 84/137 (61.31%), Query Frame = 0 

Query: 104 CGEMNQYKNH------SQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFN 163
           CGE NQY NH      SQ+QN TKVQRKPIKVKYISSPMM+KASNA++FRAIVQQLTGF+
Sbjct: 4   CGE-NQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFD 63

Query: 164 SDATISPTNHR-PPPATRAPSSTL-----LLEAIGVPDDR--SSLLHLDEGGCFGREND- 223
           S+      N +      R PS+        +E +   DD    SLL  D  GCF  +N+ 
Sbjct: 64  SNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQNNN 123

[Close]
BLAST of Moc08g43130 vs. NCBI nr
Match: KAA0063579.1 (VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.1 bits (266), Expect = 2.0e-19
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 0 

Query: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62
           KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   ++      ++ NHAFYPPPPS
Sbjct: 32  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD--HDANFDQSVQDFNHAFYPPPPS 91

Query: 63  TA---VSTDPKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQASCC 105
           ++   VS DP+  YG  SG      ++ +  EG + + EM+G FSGFQAS C
Sbjct: 92  SSTPGVSFDPRDCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSC 141

[Close]
BLAST of Moc08g43130 vs. NCBI nr
Match: XP_038877668.1 (sigma factor binding protein 1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 103.6 bits (257), Expect = 2.2e-18
Identity = 63/104 (60.58%), Postives = 71/104 (68.27%), Query Frame = 0 

Query: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62
           KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SP DAF+  A    E+ N  FYPPP S
Sbjct: 5   KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPHDAFDQSA----EDFNQVFYPPPSS 64

Query: 63  TAV-STDPKGYYGLVSGKVGELGEGCFRQDEMQG-FSGFQASCC 105
            A  S DPK  Y   SG V    +G     EM+G FSGFQAS C
Sbjct: 65  MAAPSFDPKDCYASASGDVLFDWQG-----EMEGSFSGFQASSC 99

[Close]
BLAST of Moc08g43130 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.5e-04
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 0 

Query: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62
           KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D   E P +    + +H   PP  +
Sbjct: 38  KPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQPE-PIYSPSSD-DHNLSPPAEN 97

Query: 63  TAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGFQASCCGEMNQY 111
            A     +  +G       E    E  F  D+M  GFSGF ++    +N +
Sbjct: 98  LAPRVLHQEPFGERDSDCYEPLNAEDMFLPDQMSAGFSGFFSNGFYNVNDF 145

[Close]
BLAST of Moc08g43130 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 9.5e-04
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 0 

Query: 3  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62
          KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D                   PP P+
Sbjct: 35 KPIKVRYISNPMRVE-TCPSKFRELVQELTGQDAAD------------------LPPSPT 81

Query: 63 TAVSTD 69
          T  + D
Sbjct: 95 TFTAVD 81

[Close]
BLAST of Moc08g43130 vs. ExPASy TrEMBL
Match: A0A6J1CME4 (sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111012954 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 9.8e-52
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPP 60
           MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPP
Sbjct: 1   MEKPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPP 60

Query: 61  PSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQASC 104
           PSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQASC
Sbjct: 61  PSTAVSTDPKGYYGLVSGKVGELGEGCFRQDEMQGFSGFQASC 103

[Close]
BLAST of Moc08g43130 vs. ExPASy TrEMBL
Match: A0A0A0LIA7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-20
Identity = 71/137 (51.82%), Postives = 84/137 (61.31%), Query Frame = 0 

Query: 104 CGEMNQYKNH------SQSQNTTKVQRKPIKVKYISSPMMVKASNAMDFRAIVQQLTGFN 163
           CGE NQY NH      SQ+QN TKVQRKPIKVKYISSPMM+KASNA++FRAIVQQLTGF+
Sbjct: 4   CGE-NQYTNHNHSQSQSQNQNPTKVQRKPIKVKYISSPMMIKASNALEFRAIVQQLTGFD 63

Query: 164 SDATISPTNHR-PPPATRAPSSTL-----LLEAIGVPDDR--SSLLHLDEGGCFGREND- 223
           S+      N +      R PS+        +E +   DD    SLL  D  GCF  +N+ 
Sbjct: 64  SNTPTRRRNQKLLSDCARTPSAMFHADRHEMEVLKFSDDHHMESLLQFDGQGCFETQNNN 123

[Close]
BLAST of Moc08g43130 vs. ExPASy TrEMBL
Match: A0A5A7VDH6 (VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001220 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.8e-20
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 0 

Query: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62
           KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   ++      ++ NHAFYPPPPS
Sbjct: 32  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPD--HDANFDQSVQDFNHAFYPPPPS 91

Query: 63  TA---VSTDPKGYYGLVSG------KVGELGEGCFRQDEMQG-FSGFQASCC 105
           ++   VS DP+  YG  SG      ++ +  EG + + EM+G FSGFQAS C
Sbjct: 92  SSTPGVSFDPRDCYGSASGDVLFDDRIEDGDEGRYWRGEMEGSFSGFQASSC 141

[Close]
BLAST of Moc08g43130 vs. ExPASy TrEMBL
Match: A0A0A0LFF9 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.4e-18
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 0 

Query: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62
           KPIKVKYIS+PMMVKAN+ESEFR IVQ+LTGQ+SPD   +S      ++ NH FYPPPPS
Sbjct: 30  KPIKVKYISSPMMVKANNESEFRAIVQKLTGQHSPDHDDQS-----VQDFNHVFYPPPPS 89

Query: 63  TA--VSTDPKGYYG------LVSGKVGELGEGCFRQDEMQ--GFSGFQASCC 105
           ++  VS DPK  YG      ++  ++ +  EG + + EM+   FSGFQAS C
Sbjct: 90  SSPGVSFDPKDCYGNSASGDVLFDRIEDGDEGRYWRGEMELGSFSGFQASSC 136

[Close]
BLAST of Moc08g43130 vs. ExPASy TrEMBL
Match: A0A6J1FJE0 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111444440 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 56/106 (52.83%), Postives = 65/106 (61.32%), Query Frame = 0 

Query: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62
           KPIKVKYIS+PMMVKAN+E EFR IVQ+LTGQ+S DDAF+       +E NHAF  PP S
Sbjct: 28  KPIKVKYISSPMMVKANNEFEFRAIVQKLTGQHSADDAFDR----SPQEFNHAFC-PPSS 87

Query: 63  TAVSTDPKGYYGLVSGK------VGELGEGCFRQDEMQGFSGFQAS 103
           T  S D K  Y LVS        VGE+ +  +         GFQAS
Sbjct: 88  TVTSFDSKDCYDLVSSDAYDPIGVGEMKDSLY---------GFQAS 119

[Close]
BLAST of Moc08g43130 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 47.4 bits (111), Expect = 1.8e-05
Identity = 41/111 (36.94%), Postives = 58/111 (52.25%), Query Frame = 0 

Query: 3   KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62
           KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D   E P +    + +H   PP  +
Sbjct: 38  KPIKVRYISNPMRVQ-TCASKFRELVQELTGQDAVDLQPE-PIYSPSSD-DHNLSPPAEN 97

Query: 63  TAVSTDPKGYYGLVSGKVGE--LGEGCFRQDEMQ-GFSGFQASCCGEMNQY 111
            A     +  +G       E    E  F  D+M  GFSGF ++    +N +
Sbjct: 98  LAPRVLHQEPFGERDSDCYEPLNAEDMFLPDQMSAGFSGFFSNGFYNVNDF 145

[Close]
BLAST of Moc08g43130 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 45.4 bits (106), Expect = 6.8e-05
Identity = 28/66 (42.42%), Postives = 36/66 (54.55%), Query Frame = 0 

Query: 3  KPIKVKYISNPMMVKANSESEFREIVQRLTGQNSPDDAFESPAFGGEEELNHAFYPPPPS 62
          KPIKV+YISNPM V+    S+FRE+VQ LTGQ++ D                   PP P+
Sbjct: 35 KPIKVRYISNPMRVE-TCPSKFRELVQELTGQDAAD------------------LPPSPT 81

Query: 63 TAVSTD 69
          T  + D
Sbjct: 95 TFTAVD 81

The following BLAST results are available for this feature:
BLAST of Moc08g43130 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022142960.12.0e-51100.00sigma factor binding protein 1, chloroplastic-like [Momordica charantia][more]
KAG6599333.11.3e-2658.27hypothetical protein SDJN03_09111, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN60779.17.0e-2051.82hypothetical protein Csa_019238 [Cucumis sativus][more]
KAA0063579.12.0e-1955.36VQ motif-containing protein [Cucumis melo var. makuwa] >TYJ97906.1 VQ motif-cont... [more]
XP_038877668.12.2e-1860.58sigma factor binding protein 1, chloroplastic-like [Benincasa hispida][more]
BLAST of Moc08g43130 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LDH12.5e-0436.94Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
O806699.5e-0442.42Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN... [more]
BLAST of Moc08g43130 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1CME49.8e-52100.00sigma factor binding protein 1, chloroplastic-like OS=Momordica charantia OX=367... [more]
A0A0A0LIA73.4e-2051.82VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010150 PE=4 SV=... [more]
A0A5A7VDH69.8e-2055.36VQ motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A0A0LFF92.4e-1853.57VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G010160 PE=4 SV=... [more]
A0A6J1FJE01.1e-1352.83sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662... [more]
BLAST of Moc08g43130 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G56710.11.8e-0536.94sigma factor binding protein 1 [more]
AT2G41180.16.8e-0542.42VQ motif-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 132..159
e-value: 1.6E-8
score: 33.9
coord: 10..38
e-value: 6.6E-9
score: 35.1
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTICcoord: 109..161
IPR039335Sigma factor binding protein 1/2PANTHERPTHR33624SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTICcoord: 3..43
NoneNo IPR availablePANTHERPTHR33624:SF17VQ MOTIF PROTEINcoord: 3..43
NoneNo IPR availablePANTHERPTHR33624:SF17VQ MOTIF PROTEINcoord: 109..161

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g43130.1Moc08g43130.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051091 positive regulation of DNA-binding transcription factor activity