Moc08g42660 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g42660
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	40S ribosomal protein S24
Location	chr8: 32709784 .. 32711304 (-)
RNA-Seq Expression	Moc08g42660
Synteny	Moc08g42660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTATTAAACCAGCTAGGGTTTTGCCGCACTCCCTTTTATCATCCCTCATAAGGTCTGAGAGCTGCCGTTTCCTTCTGCGCCTTCGCCCTTCTTCGAGCTCTAATCGGCCTCTCATTCTCTTCGGAGCATCTTCAGCCATGGCGGACAAGGCAGTTACCATCCGGACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTCTTAGATCTTTTCGCATCAGTCCGCATTTTTTCTGTTCGGCTTCGATTTGGAGCGGTACTGCACCGTTTGATTCTACTATGCTGAAACTTTACATGGAACTGGACTTGTTTTTTAATTTCGTTTTGGGTTTTGAGTTCGGACTTCGTTCGTGTATGGATTTTGGTATAGTACTGAACTAACTGGGATGCATTTGTTTGACGCTGAAAGGGGTTCGGCATTTTCTTTTTTTTTTTCTTGTGTATGATCTAAAACCCTGATGTCATTCAGGATTCTTAAGCCTTTGGTTTCCATATGATTTGGAGTTTAGGGTTTTGGGTGTTGCTCCTCTAACGACGACTGTGAGTAATTGCTTAAAGGCTGGGGATTTATGTTACTTGATATCTCAGAGACTTCGTCCCAAGTTTTGCTTTTTGAAACTGTCTGAGTTTCTGCCTTTTATGGATTTGGAAGAAATTTTGAAATTGTTTTGTAACTTTCTGTACCATGTTTAATGTAGGTCATTGATGTGCTTCATCCAGGCAGACCCAATGTGTCCAAGGTAAAAACCTTTTCAGTTCATCTATTTTTTCAACTTTCTTTGAATAGCTGTTTTTTTAACCTTTCTACAAATATTGCTGTTCTGGATCTGATTGTAAGACTAATGAAGGAGAATTCTACAATTTTCTATTCTTTTTGTGTATTTGGCCAATTTCCATTGAAAGATTATTGCTCTGGCATACATGGTGCTTAATTATGTTATGCATTTTTCATCTGGTGCTCATTTTATTTTATGTTTATTTCTTGGTCTAAAGGCTGAGCTGAAGGAGAAGTTATCTAGAATCTATGATGTGAAAGACCCAAATGCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACTGGGTTCGGTTTGATATATGATTCTGTTGAGAACGCTAAGAAGTATGAACCAAAATACAGGCTAATCAGGGTAACTTACAATCTATTTTCGTGCAGCATTTGACAATTTTTCTCTTACGTTTAGTTTTTGCAATTGAGTGGTATTTCTGAAACCTGACTTTTTTTTTCTTATGTCAGAATGGACTTGACACTAAGGTAGAAAAATCCAGAAAGCAGATGAAGGAAAGGAAAAACAGAGCCAAGAAAATCCGTGGAGTTAAGAAGGTAAGTAAATCCTTGTGGCTAGTTGATGATATGATGTAATGTTAAACTGCTCCTTGTCTCGGTTTCTTATAAAAAAATTGTTTGATATCTTTTTACAGACCAAGGCTTCGGATGCTGCCAAGGCAGGAAAGAAGAAGTGA

mRNA sequence

ATGGAGTTTATTAAACCAGCTAGGGTTTTGCCGCACTCCCTTTTATCATCCCTCATAAGGTCTGAGAGCTGCCGTTTCCTTCTGCGCCTTCGCCCTTCTTCGAGCTCTAATCGGCCTCTCATTCTCTTCGGAGCATCTTCAGCCATGGCGGACAAGGCAGTTACCATCCGGACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTCTTAGATCTTTTCGCATCAGTCCGCATTTTTTCTGTTCGGCTTCGATTTGGAGCGTTCGGACTTCGTTCGTGTATGGATTTTGGATTCTTAAGCCTTTGGTTTCCATATGATTTGGAGTTTAGGGTTTTGGGTGTTGCTCCTCTAACGACGACTGTCATTGATGTGCTTCATCCAGGCAGACCCAATGTGTCCAAGGCTGAGCTGAAGGAGAAGTTATCTAGAATCTATGATGTGAAAGACCCAAATGCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACTGGGTTCGGTTTGATATATGATTCTGTTGAGAACGCTAAGAAGTATGAACCAAAATACAGGCTAATCAGGAATGGACTTGACACTAAGGTAGAAAAATCCAGAAAGCAGATGAAGGAAAGGAAAAACAGAGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCGGATGCTGCCAAGGCAGGAAAGAAGAAGTGA

Coding sequence (CDS)

ATGGAGTTTATTAAACCAGCTAGGGTTTTGCCGCACTCCCTTTTATCATCCCTCATAAGGTCTGAGAGCTGCCGTTTCCTTCTGCGCCTTCGCCCTTCTTCGAGCTCTAATCGGCCTCTCATTCTCTTCGGAGCATCTTCAGCCATGGCGGACAAGGCAGTTACCATCCGGACCAGGAAGTTCATGACCAACAGGCTTCTCTCCAGGAAGCAATTTGTGAGTTTCTTAGATCTTTTCGCATCAGTCCGCATTTTTTCTGTTCGGCTTCGATTTGGAGCGTTCGGACTTCGTTCGTGTATGGATTTTGGATTCTTAAGCCTTTGGTTTCCATATGATTTGGAGTTTAGGGTTTTGGGTGTTGCTCCTCTAACGACGACTGTCATTGATGTGCTTCATCCAGGCAGACCCAATGTGTCCAAGGCTGAGCTGAAGGAGAAGTTATCTAGAATCTATGATGTGAAAGACCCAAATGCTATCTTTGTTTTCAAGTTCAGAACTCACTTTGGTGGTGGAAAATCTACTGGGTTCGGTTTGATATATGATTCTGTTGAGAACGCTAAGAAGTATGAACCAAAATACAGGCTAATCAGGAATGGACTTGACACTAAGGTAGAAAAATCCAGAAAGCAGATGAAGGAAAGGAAAAACAGAGCCAAGAAAATCCGTGGAGTTAAGAAGACCAAGGCTTCGGATGCTGCCAAGGCAGGAAAGAAGAAGTGA

Protein sequence

MEFIKPARVLPHSLLSSLIRSESCRFLLRLRPSSSSNRPLILFGASSAMADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLWFPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAAKAGKKK

Homology

[Close]

BLAST of Moc08g42660 vs. NCBI nr
Match: KAA8536959.1 (hypothetical protein F0562_029437 [Nyssa sinensis])

HSP 1 Score: 235.7 bits (600), Expect = 4.1e-58
Identity = 136/191 (71.20%), Postives = 146/191 (76.44%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF+ +   +                          SL 
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIFWATEW--------------------------SLM 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
             Y L+      + L   +IDVLHPGRPNVSKAELKEKL+R+Y+VKDPNAIFVFKFRTHF
Sbjct: 61  VSYLLQ------SLLCIQIIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTK 159

Query: 229 ASDAAKAGKKK 240
           A DAAKAGKKK
Sbjct: 181 AGDAAKAGKKK 159

[Close]

BLAST of Moc08g42660 vs. NCBI nr
Match: XP_022143165.1 (40S ribosomal protein S24-1 [Momordica charantia])

HSP 1 Score: 234.6 bits (597), Expect = 9.1e-58
Identity = 137/191 (71.73%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             VIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF
Sbjct: 61  ------------------VIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 137

Query: 229 ASDAAKAGKKK 240
           ASDAAKAGKKK
Sbjct: 181 ASDAAKAGKKK 137

[Close]

BLAST of Moc08g42660 vs. NCBI nr
Match: XP_008455742.1 (PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S ribosomal protein S24-1 [Benincasa hispida] >ADN33912.1 40S ribosomal protein s24 [Cucumis melo subsp. melo] >KAA0063627.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa] >TYK18399.1 40S ribosomal protein S24-1 [Cucumis melo var. makuwa])

HSP 1 Score: 233.0 bits (593), Expect = 2.6e-57
Identity = 135/191 (70.68%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             +IDVLHPGRPNVSKAELKEKL+RIYDVKDPNAIFVFKFRTHF
Sbjct: 61  ------------------IIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 137

Query: 229 ASDAAKAGKKK 240
           ASDAAKAGKKK
Sbjct: 181 ASDAAKAGKKK 137

[Close]

BLAST of Moc08g42660 vs. NCBI nr
Match: XP_022937688.1 (40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022966001.1 40S ribosomal protein S24-1 [Cucurbita maxima] >XP_023536700.1 40S ribosomal protein S24-1-like [Cucurbita pepo subsp. pepo] >KAG6586294.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021142.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 233.0 bits (593), Expect = 2.6e-57
Identity = 136/191 (71.20%), Postives = 136/191 (71.20%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             VIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHF
Sbjct: 61  ------------------VIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 137

Query: 229 ASDAAKAGKKK 240
           ASDAAKAGKKK
Sbjct: 181 ASDAAKAGKKK 137

[Close]

BLAST of Moc08g42660 vs. NCBI nr
Match: XP_022946610.1 (40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal protein S24-1 [Cucurbita pepo subsp. pepo] >KAG6599291.1 40S ribosomal protein S24-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030289.1 40S ribosomal protein S24-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-57
Identity = 135/191 (70.68%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             VIDVLHPGRPNVSKAELKEKL+RIYDVKDPN+IFVFKFRTHF
Sbjct: 61  ------------------VIDVLHPGRPNVSKAELKEKLARIYDVKDPNSIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 137

Query: 229 ASDAAKAGKKK 240
           ASDAAKAGKKK
Sbjct: 181 ASDAAKAGKKK 137

[Close]

BLAST of Moc08g42660 vs. ExPASy Swiss-Prot
Match: Q9SS17 (40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 2.0e-52
Identity = 119/186 (63.98%), Postives = 129/186 (69.35%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MA+KAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             VIDVLHPGR NVSKAELKEKL+R+Y+VKDPNAIFVFKFRTHF
Sbjct: 61  ------------------VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTK 132

Query: 229 ASDAAK 235
           A DA K
Sbjct: 181 AGDAKK 132

[Close]

BLAST of Moc08g42660 vs. ExPASy Swiss-Prot
Match: Q8LC83 (40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2)

HSP 1 Score: 201.4 bits (511), Expect = 1.1e-50
Identity = 115/186 (61.83%), Postives = 126/186 (67.74%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MA+KAVTIRTR FMTNRLL+RKQF                                    
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             VIDVLHPGR NVSKAELKEKL+R+Y+VKDPNAIF FKFRTHF
Sbjct: 61  ------------------VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTK 132

Query: 229 ASDAAK 235
           A D  K
Sbjct: 181 AGDTKK 132

[Close]

BLAST of Moc08g42660 vs. ExPASy Swiss-Prot
Match: Q962Q6 (40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.4e-31
Identity = 84/186 (45.16%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           M +   TIRTRKFMTNRLL+RKQ                                     
Sbjct: 1   MTEGTATIRTRKFMTNRLLARKQM------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             V DVLHPG+P VSK E++EKL+++Y V  P+ +FVF F+T+F
Sbjct: 61  ------------------VCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGF LIYD+++ AKK+EPK+RL R+GL  K   +RKQ KERKNR KK+RG KK+K
Sbjct: 121 GGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 131

Query: 229 ASDAAK 235
              AAK
Sbjct: 181 VGAAAK 131

[Close]

BLAST of Moc08g42660 vs. ExPASy Swiss-Prot
Match: Q56JU9 (40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-29
Identity = 86/186 (46.24%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 54  VTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLWFPYDL 113
           VTIRTRKFMTNRLL RKQ                                          
Sbjct: 5   VTIRTRKFMTNRLLQRKQM----------------------------------------- 64

Query: 114 EFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHFGGGKS 173
                        VIDVLHPG+  V K E++EKL+++Y    P+ IFVF FRTHFGGGK+
Sbjct: 65  -------------VIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKT 124

Query: 174 TGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAA 233
           TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K       
Sbjct: 125 TGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVG--- 131

Query: 234 KAGKKK 240
            AGKKK
Sbjct: 185 -AGKKK 131

[Close]

BLAST of Moc08g42660 vs. ExPASy Swiss-Prot
Match: Q5RAQ8 (40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.4e-29
Identity = 86/186 (46.24%), Postives = 101/186 (54.30%), Query Frame = 0


Query: 54  VTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLWFPYDL 113
           VTIRTRKFMTNRLL RKQ                                          
Sbjct: 5   VTIRTRKFMTNRLLQRKQM----------------------------------------- 64

Query: 114 EFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHFGGGKS 173
                        VIDVLHPG+  V K E++EKL+++Y    P+ IFVF FRTHFGGGK+
Sbjct: 65  -------------VIDVLHPGKATVPKTEIREKLAKMYKT-TPDVIFVFGFRTHFGGGKT 124

Query: 174 TGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTKASDAA 233
           TGFG+IYDS++ AKK EPK+RL R+GL  K + SRKQ KERKNR KK+RG  K       
Sbjct: 125 TGFGMIYDSLDYAKKNEPKHRLARHGLYEKKKTSRKQRKERKNRMKKVRGTAKANVG--- 131

Query: 234 KAGKKK 240
            AGKKK
Sbjct: 185 -AGKKK 131

[Close]

BLAST of Moc08g42660 vs. ExPASy TrEMBL
Match: A0A5J5B2R1 (40S ribosomal protein S24 OS=Nyssa sinensis OX=561372 GN=F0562_029437 PE=3 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 2.0e-58
Identity = 136/191 (71.20%), Postives = 146/191 (76.44%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF+ +   +                          SL 
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQFIFWATEW--------------------------SLM 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
             Y L+      + L   +IDVLHPGRPNVSKAELKEKL+R+Y+VKDPNAIFVFKFRTHF
Sbjct: 61  VSYLLQ------SLLCIQIIDVLHPGRPNVSKAELKEKLARMYEVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQ+KERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQLKERKNRAKKIRGVKKTK 159

Query: 229 ASDAAKAGKKK 240
           A DAAKAGKKK
Sbjct: 181 AGDAAKAGKKK 159

[Close]

BLAST of Moc08g42660 vs. ExPASy TrEMBL
Match: A0A6J1CN14 (40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 4.4e-58
Identity = 137/191 (71.73%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             VIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF
Sbjct: 61  ------------------VIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 137

Query: 229 ASDAAKAGKKK 240
           ASDAAKAGKKK
Sbjct: 181 ASDAAKAGKKK 137

[Close]

BLAST of Moc08g42660 vs. ExPASy TrEMBL
Match: A0A5D3D4C1 (40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold456G001230 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 135/191 (70.68%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             +IDVLHPGRPNVSKAELKEKL+RIYDVKDPNAIFVFKFRTHF
Sbjct: 61  ------------------IIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 137

Query: 229 ASDAAKAGKKK 240
           ASDAAKAGKKK
Sbjct: 181 ASDAAKAGKKK 137

[Close]

BLAST of Moc08g42660 vs. ExPASy TrEMBL
Match: A0A6J1HN66 (40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111465719 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 136/191 (71.20%), Postives = 136/191 (71.20%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             VIDVLHPGRPNVSKAELKEKL RIYDVKDPNAIFVFKFRTHF
Sbjct: 61  ------------------VIDVLHPGRPNVSKAELKEKLGRIYDVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 137

Query: 229 ASDAAKAGKKK 240
           ASDAAKAGKKK
Sbjct: 181 ASDAAKAGKKK 137

[Close]

BLAST of Moc08g42660 vs. ExPASy TrEMBL
Match: E5GBS0 (40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 1.3e-57
Identity = 135/191 (70.68%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MADKAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MADKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             +IDVLHPGRPNVSKAELKEKL+RIYDVKDPNAIFVFKFRTHF
Sbjct: 61  ------------------IIDVLHPGRPNVSKAELKEKLARIYDVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 137

Query: 229 ASDAAKAGKKK 240
           ASDAAKAGKKK
Sbjct: 181 ASDAAKAGKKK 137

[Close]

BLAST of Moc08g42660 vs. TAIR 10
Match: AT3G04920.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 207.2 bits (526), Expect = 1.4e-53
Identity = 119/186 (63.98%), Postives = 129/186 (69.35%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MA+KAVTIRTRKFMTNRLLSRKQF                                    
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             VIDVLHPGR NVSKAELKEKL+R+Y+VKDPNAIFVFKFRTHF
Sbjct: 61  ------------------VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKS+GFGLIYD+VE+AKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTK 132

Query: 229 ASDAAK 235
           A DA K
Sbjct: 181 AGDAKK 132

[Close]

BLAST of Moc08g42660 vs. TAIR 10
Match: AT5G28060.1 (Ribosomal protein S24e family protein )

HSP 1 Score: 201.4 bits (511), Expect = 7.9e-52
Identity = 115/186 (61.83%), Postives = 126/186 (67.74%), Query Frame = 0


Query: 49  MADKAVTIRTRKFMTNRLLSRKQFVSFLDLFASVRIFSVRLRFGAFGLRSCMDFGFLSLW 108
           MA+KAVTIRTR FMTNRLL+RKQF                                    
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQF------------------------------------ 60

Query: 109 FPYDLEFRVLGVAPLTTTVIDVLHPGRPNVSKAELKEKLSRIYDVKDPNAIFVFKFRTHF 168
                             VIDVLHPGR NVSKAELKEKL+R+Y+VKDPNAIF FKFRTHF
Sbjct: 61  ------------------VIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHF 120

Query: 169 GGGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKIRGVKKTK 228
           GGGKS+G+GLIYD+VENAKK+EPKYRLIRNGLDTK+EKSRKQ+KERKNRAKKIRGVKKTK
Sbjct: 121 GGGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTK 132

Query: 229 ASDAAK 235
           A D  K
Sbjct: 181 AGDTKK 132

The following BLAST results are available for this feature:

BLAST of Moc08g42660 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA8536959.1	4.1e-58	71.20	hypothetical protein F0562_029437 [Nyssa sinensis]	[more]
XP_022143165.1	9.1e-58	71.73	40S ribosomal protein S24-1 [Momordica charantia]	[more]
XP_008455742.1	2.6e-57	70.68	PREDICTED: 40S ribosomal protein S24-1 [Cucumis melo] >XP_038889626.1 40S riboso...	[more]
XP_022937688.1	2.6e-57	71.20	40S ribosomal protein S24-1-like [Cucurbita moschata] >XP_022966001.1 40S riboso...	[more]
XP_022946610.1	4.5e-57	70.68	40S ribosomal protein S24-1 [Cucurbita moschata] >XP_023545845.1 40S ribosomal p...	[more]

BLAST of Moc08g42660 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SS17	2.0e-52	63.98	40S ribosomal protein S24-1 OS=Arabidopsis thaliana OX=3702 GN=RPS24A PE=2 SV=1	[more]
Q8LC83	1.1e-50	61.83	40S ribosomal protein S24-2 OS=Arabidopsis thaliana OX=3702 GN=RPS24B PE=2 SV=2	[more]
Q962Q6	3.4e-31	45.16	40S ribosomal protein S24 OS=Spodoptera frugiperda OX=7108 GN=RpS24 PE=2 SV=1	[more]
Q56JU9	2.4e-29	46.24	40S ribosomal protein S24 OS=Bos taurus OX=9913 GN=RPS24 PE=2 SV=2	[more]
Q5RAQ8	2.4e-29	46.24	40S ribosomal protein S24 OS=Pongo abelii OX=9601 GN=RPS24 PE=2 SV=1	[more]

BLAST of Moc08g42660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5J5B2R1	2.0e-58	71.20	40S ribosomal protein S24 OS=Nyssa sinensis OX=561372 GN=F0562_029437 PE=3 SV=1	[more]
A0A6J1CN14	4.4e-58	71.73	40S ribosomal protein S24 OS=Momordica charantia OX=3673 GN=LOC111013098 PE=3 SV...	[more]
A0A5D3D4C1	1.3e-57	70.68	40S ribosomal protein S24 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1HN66	1.3e-57	71.20	40S ribosomal protein S24 OS=Cucurbita maxima OX=3661 GN=LOC111465719 PE=3 SV=1	[more]
E5GBS0	1.3e-57	70.68	40S ribosomal protein S24 OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1	[more]

BLAST of Moc08g42660 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04920.1	1.4e-53	63.98	Ribosomal protein S24e family protein	[more]
AT5G28060.1	7.9e-52	61.83	Ribosomal protein S24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001976	Ribosomal protein S24e	PFAM	PF01282	Ribosomal_S24e	coord: 127..205 e-value: 5.5E-35 score: 119.2
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 126..239
IPR001976	Ribosomal protein S24e	PANTHER	PTHR10496	40S RIBOSOMAL PROTEIN S24	coord: 49..74
IPR001976	Ribosomal protein S24e	HAMAP	MF_00545	Ribosomal_S24e	coord: 52..208 score: 16.060299
None	No IPR available	GENE3D	3.30.70.3370		coord: 123..234 e-value: 2.8E-45 score: 155.2 coord: 46..78 e-value: 3.1E-6 score: 28.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..239
None	No IPR available	PANTHER	PTHR10496:SF18	40S RIBOSOMAL PROTEIN S24	coord: 49..74 coord: 126..239
IPR018098	Ribosomal S24e conserved site	PROSITE	PS00529	RIBOSOMAL_S24E	coord: 168..190
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 127..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g42660.1	Moc08g42660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome