Moc08g41590 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g41590
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionF-box protein At5g49610-like
Locationchr8: 31848228 .. 31848623 (-)
RNA-Seq ExpressionMoc08g41590
SyntenyMoc08g41590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGTGCAGGGGACGAGGGTGGAAGCGACCGAGGTATGGGTGATGGAGAATTACAAGAAGAGAATATGGACCAAAAAGTTAGATCTGGCCATGGAGATGCCTAGGGCATTTTACTCCTCTGATGTTGTGGTGAGCCATCTGTTTAAGGAGACCAAGTTCTATAATTTCGTGCATGGAGGTTGCGTTTATAGCCCTATGCAATGGCGGTGTCCTGATATTTTTCCTTTCTTGTTGGATTTTGAGCCATGCAATTTCTTCGACAATCGACGTCTCAACCCTCAAACTATGGTCAAGATCCTTCGAAAACGTTTGCTTGCCATCCAAAATAAGGAAAATATTGGAGGAACTCAAATATTTAATGGTAGTAAGGACAAAGTTCTTCCTTACGAGTGA

mRNA sequence

ATGATGGTGCAGGGGACGAGGGTGGAAGCGACCGAGGTATGGGTGATGGAGAATTACAAGAAGAGAATATGGACCAAAAAGTTAGATCTGGCCATGGAGATGCCTAGGGCATTTTACTCCTCTGATGTTGTGGTGAGCCATCTGTTTAAGGAGACCAAGTTCTATAATTTCGTGCATGGAGGTTGCGTTTATAGCCCTATGCAATGGCGGTGTCCTGATATTTTTCCTTTCTTGTTGGATTTTGAGCCATGCAATTTCTTCGACAATCGACGTCTCAACCCTCAAACTATGGTCAAGATCCTTCGAAAACGTTTGCTTGCCATCCAAAATAAGGAAAATATTGGAGGAACTCAAATATTTAATGGTAGTAAGGACAAAGTTCTTCCTTACGAGTGA

Coding sequence (CDS)

ATGATGGTGCAGGGGACGAGGGTGGAAGCGACCGAGGTATGGGTGATGGAGAATTACAAGAAGAGAATATGGACCAAAAAGTTAGATCTGGCCATGGAGATGCCTAGGGCATTTTACTCCTCTGATGTTGTGGTGAGCCATCTGTTTAAGGAGACCAAGTTCTATAATTTCGTGCATGGAGGTTGCGTTTATAGCCCTATGCAATGGCGGTGTCCTGATATTTTTCCTTTCTTGTTGGATTTTGAGCCATGCAATTTCTTCGACAATCGACGTCTCAACCCTCAAACTATGGTCAAGATCCTTCGAAAACGTTTGCTTGCCATCCAAAATAAGGAAAATATTGGAGGAACTCAAATATTTAATGGTAGTAAGGACAAAGTTCTTCCTTACGAGTGA

Protein sequence

MMVQGTRVEATEVWVMENYKKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETKFYNFVHGGCVYSPMQWRCPDIFPFLLDFEPCNFFDNRRLNPQTMVKILRKRLLAIQNKENIGGTQIFNGSKDKVLPYE
Homology
[Close]
BLAST of Moc08g41590 vs. NCBI nr
Match: XP_022154661.1 (F-box protein At5g49610-like [Momordica charantia])

HSP 1 Score: 167.2 bits (422), Expect = 9.7e-38
Identity = 82/121 (67.77%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 1   MMVQGTRVEATEVWVMENYKKRIWTKKLDLAMEMPRAFYSSDVVVS-HLFKETKFYNFVH 60
           +M+Q T+V+ATEVWVME Y+KRIWTK+LDLAMEMP AFYSSDV ++  +F E KF NFVH
Sbjct: 270 LMMQETKVKATEVWVMEKYEKRIWTKRLDLAMEMPIAFYSSDVAMNVQMFTEAKFCNFVH 329

Query: 61  GGCVYSPMQ---WRCPDIFPFLLDFEPCNFFDN---RRLNPQTMVKILRKRLLAIQNKEN 115
           GGC YSP +   + CPD+FPFL DFEPCN FD    RRLNP+TM+KILRKRLLAIQN  +
Sbjct: 330 GGCTYSPTRGAMYGCPDVFPFLSDFEPCNLFDTAPPRRLNPRTMLKILRKRLLAIQNNVH 389

[Close]
BLAST of Moc08g41590 vs. NCBI nr
Match: TYK25356.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-08
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0 

Query: 11  TEVWVMENY-KKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSP 70
           TE+WVMENY KK++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y  
Sbjct: 258 TELWVMENYGKKKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIEMGERNYKK 317

Query: 71  MQW---RCPDIFPFLLDFEPCNFF-DNRRLNPQTMVKILRK 104
           ++      P +FPFL DFE  NF    R + P+ + KILR+
Sbjct: 318 LEQSHRHLPMVFPFLSDFETWNFNPPPRSIKPKAVSKILRR 358

[Close]
BLAST of Moc08g41590 vs. NCBI nr
Match: XP_008443600.1 (PREDICTED: F-box protein At5g49610-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-08
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 11  TEVWVMENY-KKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSP 70
           TE+WVMENY KK++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y  
Sbjct: 290 TELWVMENYGKKKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIETGERNYKK 349

Query: 71  MQW---RCPDIFPFLLDFEPCNFF-DNRRLNPQTMVKILRK 104
            +      P +FPFL DFE  NF    R + P+ + KILR+
Sbjct: 350 SEQSHRHLPMVFPFLSDFETWNFNPPPRSIKPKAVSKILRR 390

[Close]
BLAST of Moc08g41590 vs. NCBI nr
Match: KAA0043777.1 (F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.2 bits (165), Expect = 6.1e-08
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 11  TEVWVMENY-KKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSP 70
           TE+WVMENY KK++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y  
Sbjct: 258 TELWVMENYGKKKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIETGERNYKK 317

Query: 71  MQW---RCPDIFPFLLDFEPCNFF-DNRRLNPQTMVKILRK 104
            +      P +FPFL DFE  NF    R + P+ + KILR+
Sbjct: 318 SEQSHRHLPMVFPFLSDFETWNFNPPPRSIKPKAVSKILRR 358

[Close]
BLAST of Moc08g41590 vs. NCBI nr
Match: KAG6580773.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 64.7 bits (156), Expect = 6.8e-07
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0 

Query: 12  EVWVMENYKKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKE-TKFYNFVHGGCVYSPMQ-- 71
           E+WVME+YK+R+WTKK +  +  P A Y SD +++    E  KF N   G   Y  ++  
Sbjct: 288 ELWVMEDYKERVWTKKWEFLVSNPTAVYGSDTLMAMENNEKVKFCNVETGNYSYRQLEPT 347

Query: 72  ---WRCPDIFPFLLDFEPCNFF--DNRRLNPQTMVKILR 103
                   +FPF  DFEP +++    R  NP T+ K+LR
Sbjct: 348 HYYGSVLKVFPFSSDFEPWDYYPPPPRSPNPATVAKLLR 386

[Close]
BLAST of Moc08g41590 vs. ExPASy TrEMBL
Match: A0A6J1DPD6 (F-box protein At5g49610-like OS=Momordica charantia OX=3673 GN=LOC111021865 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.7e-38
Identity = 82/121 (67.77%), Postives = 98/121 (80.99%), Query Frame = 0 

Query: 1   MMVQGTRVEATEVWVMENYKKRIWTKKLDLAMEMPRAFYSSDVVVS-HLFKETKFYNFVH 60
           +M+Q T+V+ATEVWVME Y+KRIWTK+LDLAMEMP AFYSSDV ++  +F E KF NFVH
Sbjct: 270 LMMQETKVKATEVWVMEKYEKRIWTKRLDLAMEMPIAFYSSDVAMNVQMFTEAKFCNFVH 329

Query: 61  GGCVYSPMQ---WRCPDIFPFLLDFEPCNFFDN---RRLNPQTMVKILRKRLLAIQNKEN 115
           GGC YSP +   + CPD+FPFL DFEPCN FD    RRLNP+TM+KILRKRLLAIQN  +
Sbjct: 330 GGCTYSPTRGAMYGCPDVFPFLSDFEPCNLFDTAPPRRLNPRTMLKILRKRLLAIQNNVH 389

[Close]
BLAST of Moc08g41590 vs. ExPASy TrEMBL
Match: A0A5D3DNY0 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004950 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 42/101 (41.58%), Postives = 57/101 (56.44%), Query Frame = 0 

Query: 11  TEVWVMENY-KKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSP 70
           TE+WVMENY KK++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y  
Sbjct: 258 TELWVMENYGKKKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIEMGERNYKK 317

Query: 71  MQW---RCPDIFPFLLDFEPCNFF-DNRRLNPQTMVKILRK 104
           ++      P +FPFL DFE  NF    R + P+ + KILR+
Sbjct: 318 LEQSHRHLPMVFPFLSDFETWNFNPPPRSIKPKAVSKILRR 358

[Close]
BLAST of Moc08g41590 vs. ExPASy TrEMBL
Match: A0A5A7TPP2 (F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001090 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 11  TEVWVMENY-KKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSP 70
           TE+WVMENY KK++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y  
Sbjct: 258 TELWVMENYGKKKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIETGERNYKK 317

Query: 71  MQW---RCPDIFPFLLDFEPCNFF-DNRRLNPQTMVKILRK 104
            +      P +FPFL DFE  NF    R + P+ + KILR+
Sbjct: 318 SEQSHRHLPMVFPFLSDFETWNFNPPPRSIKPKAVSKILRR 358

[Close]
BLAST of Moc08g41590 vs. ExPASy TrEMBL
Match: A0A1S3B7Y4 (F-box protein At5g49610-like OS=Cucumis melo OX=3656 GN=LOC103487156 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.0e-08
Identity = 42/101 (41.58%), Postives = 56/101 (55.45%), Query Frame = 0 

Query: 11  TEVWVMENY-KKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKETK---FYNFVHGGCVYSP 70
           TE+WVMENY KK++W KKLD +  MP  FY SD+ +  L  ++    F N   G   Y  
Sbjct: 290 TELWVMENYGKKKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIETGERNYKK 349

Query: 71  MQW---RCPDIFPFLLDFEPCNFF-DNRRLNPQTMVKILRK 104
            +      P +FPFL DFE  NF    R + P+ + KILR+
Sbjct: 350 SEQSHRHLPMVFPFLSDFETWNFNPPPRSIKPKAVSKILRR 390

[Close]
BLAST of Moc08g41590 vs. ExPASy TrEMBL
Match: A0A6J1F395 (F-box protein At5g49610-like OS=Cucurbita moschata OX=3662 GN=LOC111441737 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 9.6e-07
Identity = 36/99 (36.36%), Postives = 54/99 (54.55%), Query Frame = 0 

Query: 12  EVWVMENYKKRIWTKKLDLAMEMPRAFYSSDVVVSHLFKE-TKFYNFVHGGCVYSPMQ-- 71
           E+WVME+YK+R+WTKK +  +  P A Y SD +++    E  KF N   G   Y  ++  
Sbjct: 288 ELWVMEDYKERVWTKKWEFLVSNPTAVYGSDTLMAMENNEKVKFCNVETGNYSYRQLEPT 347

Query: 72  ---WRCPDIFPFLLDFEPCNFF--DNRRLNPQTMVKILR 103
                   +FPF  DFEP +++    R  NP T+ ++LR
Sbjct: 348 HYYGSVLKVFPFSSDFEPWDYYPPPPRSPNPPTVAELLR 386

The following BLAST results are available for this feature:
BLAST of Moc08g41590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154661.19.7e-3867.77F-box protein At5g49610-like [Momordica charantia][more]
TYK25356.12.8e-0841.58F-box protein [Cucumis melo var. makuwa][more]
XP_008443600.16.1e-0841.58PREDICTED: F-box protein At5g49610-like [Cucumis melo][more]
KAA0043777.16.1e-0841.58F-box protein [Cucumis melo var. makuwa][more]
KAG6580773.16.8e-0737.37F-box protein, partial [Cucurbita argyrosperma subsp. sororia][more]
BLAST of Moc08g41590 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g41590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DPD64.7e-3867.77F-box protein At5g49610-like OS=Momordica charantia OX=3673 GN=LOC111021865 PE=4... [more]
A0A5D3DNY01.3e-0841.58F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004950... [more]
A0A5A7TPP23.0e-0841.58F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G001090... [more]
A0A1S3B7Y43.0e-0841.58F-box protein At5g49610-like OS=Cucumis melo OX=3656 GN=LOC103487156 PE=4 SV=1[more]
A0A6J1F3959.6e-0736.36F-box protein At5g49610-like OS=Cucurbita moschata OX=3662 GN=LOC111441737 PE=4 ... [more]
BLAST of Moc08g41590 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g41590.1Moc08g41590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane