Moc08g39000 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g39000
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionUnknown protein
Locationchr8: 29428162 .. 29428437 (-)
RNA-Seq ExpressionMoc08g39000
SyntenyMoc08g39000
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACGGAAACCTTCTTTCTTCGATCGGAATACGGATGAGATCAAAAATGTCAGTTGCTTACTTGCGAAGAAGGGGGCAAAGGATGCAATAGCTTCGGTTAGAGCAAAGCCCAAAATGGCACAACCAAATGATTGTTTAGCCAATGATGGATTTCGCGCCACGGAATGGATCAAAGAACTGAACACGTTTCCAATACCGACTGCAGCTCCCCTCCCGCTCAGTCCAGTCTGGGAATCCTCCCTGGGTATAGGGGAGCAAAACTCTGACTCCTAA

mRNA sequence

ATGAAACGGAAACCTTCTTTCTTCGATCGGAATACGGATGAGATCAAAAATGTCAGTTGCTTACTTGCGAAGAAGGGGGCAAAGGATGCAATAGCTTCGGTTAGAGCAAAGCCCAAAATGGCACAACCAAATGATTGTTTAGCCAATGATGGATTTCGCGCCACGGAATGGATCAAAGAACTGAACACGTTTCCAATACCGACTGCAGCTCCCCTCCCGCTCAGTCCAGTCTGGGAATCCTCCCTGGGTATAGGGGAGCAAAACTCTGACTCCTAA

Coding sequence (CDS)

ATGAAACGGAAACCTTCTTTCTTCGATCGGAATACGGATGAGATCAAAAATGTCAGTTGCTTACTTGCGAAGAAGGGGGCAAAGGATGCAATAGCTTCGGTTAGAGCAAAGCCCAAAATGGCACAACCAAATGATTGTTTAGCCAATGATGGATTTCGCGCCACGGAATGGATCAAAGAACTGAACACGTTTCCAATACCGACTGCAGCTCCCCTCCCGCTCAGTCCAGTCTGGGAATCCTCCCTGGGTATAGGGGAGCAAAACTCTGACTCCTAA

Protein sequence

MKRKPSFFDRNTDEIKNVSCLLAKKGAKDAIASVRAKPKMAQPNDCLANDGFRATEWIKELNTFPIPTAAPLPLSPVWESSLGIGEQNSDS
Homology
[Close]
BLAST of Moc08g39000 vs. NCBI nr
Match: KAG9438896.1 (hypothetical protein H6P81_021194 [Aristolochia fimbriata])

HSP 1 Score: 97.1 bits (240), Expect = 8.6e-17
Identity = 49/64 (76.56%), Postives = 52/64 (81.25%), Query Frame = 0 

Query: 8  FDRNTDEIKNVSCLLAKKGAKDAIASVRAKPKMAQPNDCLANDGFRATEWIKELNTFPIP 67
          FDRNTDEI+N     A  GA DAIASVRAKPKMA  NDC AN+GFRATEWI+EL TFPIP
Sbjct: 35 FDRNTDEIRN-----AIIGANDAIASVRAKPKMAYKNDCFANEGFRATEWIEELRTFPIP 93

Query: 68 TAAP 72
          TAAP
Sbjct: 95 TAAP 93

[Close]
BLAST of Moc08g39000 vs. NCBI nr
Match: OMP01970.1 (hypothetical protein CCACVL1_02960 [Corchorus capsularis] >OMP01972.1 hypothetical protein CCACVL1_02957 [Corchorus capsularis])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 40 MAQPNDCLANDGFRATEWIKELNTFPIPTAAP 72
          MA PN+C A DGF ATE I ELNTFPIPTAAP
Sbjct: 1  MAYPNNCFAKDGFLATECINELNTFPIPTAAP 32

[Close]
BLAST of Moc08g39000 vs. ExPASy TrEMBL
Match: A0A1R3K4G5 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02957 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 8.1e-05
Identity = 25/32 (78.12%), Postives = 26/32 (81.25%), Query Frame = 0 

Query: 40 MAQPNDCLANDGFRATEWIKELNTFPIPTAAP 72
          MA PN+C A DGF ATE I ELNTFPIPTAAP
Sbjct: 1  MAYPNNCFAKDGFLATECINELNTFPIPTAAP 32

The following BLAST results are available for this feature:
BLAST of Moc08g39000 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG9438896.18.6e-1776.56hypothetical protein H6P81_021194 [Aristolochia fimbriata][more]
OMP01970.11.7e-0478.13hypothetical protein CCACVL1_02960 [Corchorus capsularis] >OMP01972.1 hypothetic... [more]
BLAST of Moc08g39000 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g39000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1R3K4G58.1e-0578.13Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_02957 PE=4 ... [more]
BLAST of Moc08g39000 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g39000.1Moc08g39000.1mRNA