Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGGCATCTTACCTTGGCCTACCTCTACATGGCAAGCCTCAATCAGCATCTTTTTGGACCCGGTCATGGAGAAAGTGAGGAAAAGACTTAGTTCATGGGATCACTCCATCATCTCGAAAGGAGGTCAGCTCACCCTCATCCAAGCCACTTTATCCAATCTACCCACATATTACTTATCCATTTTCTCTATCCCAACTAAAGTGGCAAAGGATTTGGAAAAACTCATCCGAAATTTTTTGTGGAAGGGTTCAAACAACAACGGGGCACAAAATTTGGTTAGATGGGATCAAGTACAGAAACCAATTGAAGAAGGTGGGCTGGGTATATGCTGTATCAAGGACAAAAATCGGGCTCTTTTAGCCAAGTGGAGTTGGAGATTTCTTTTGGAAGAAACTGCCCTTTGGAGGAGAGTGATTTTGGCAAAATATGCCTTCTCCGACCACCGAAGTTCTCACCCAAACCGGATTTTTGCATCAACATAAGGTTTATGGAGAGACATTGACAAGCAGAAATCCTTGATCTTTGACAGAATCACTTATAAAGTGGGTACAGGCTTCCTTCCAAGGTTCTGGATTGATGTTTGGCTCACCAGAGAACCCCTCTGCCAAGCCTACCCCGTTCTATTTTTCTTACACTCCAGAAAGTTGGGCTCTGTAAAAGATTTTTGGTCCTCGTCGGATAAGGTTTGGGACATCCAATTTCGAAGGCACCTAAAGGATGCTGAGATTGATGAGCTAGCATCTCTCCTCCACAATCTTTCCTCCATCAGCCCTTCTACCAATCGGGATACTATTATTTGGAGTTTGGAATCACATGGACAATTCGCCACCTCCTCCCTCATTAAAGACATCCACCAAACAACAACATCACAGACAACTTCCTCTCTGTACAGTGCTATCTGGAAAGATCACTACCCAAGGAAGATAAAGATCTTCCTATGGGAAACTAGTCTCAATGCTATCAATACATAG
mRNA sequence
ATGGCCGGCATCTTACCTTGGCCTACCTCTACATGGCAAGCCTCAATCAGCATCTTTTTGGACCCGGTCATGGAGAAAGTGAGGAAAAGACTTAGTTCATGGGATCACTCCATCATCTCGAAAGGAGGTCAGCTCACCCTCATCCAAGCCACTTTATCCAATCTACCCACATATTACTTATCCATTTTCTCTATCCCAACTAAAGTGGCAAAGGATTTGGAAAAACTCATCCGAAATTTTTTGTGGAAGGGTTCAAACAACAACGGGGCACAAAATTTGGTTAGATGGGATCAAGTACAGAAACCAATTGAAGAAGGTGGGCTGGGTATATGCTGTATCAAGGACAAAAATCGGGCTCTTTTAGCCAAGTGGAGTTGGAGATTTCTTTTGGAAGAAACTGCCCTTTGGAGGAGAGTGATTTTGGCAAAATATGCCTTCTCCGACCACCGAAGCTTCCTTCCAAGGTTCTGGATTGATGTTTGGCTCACCAGAGAACCCCTCTGCCAAGCCTACCCCGTTCTATTTTTCTTACACTCCAGAAAGTTGGGCTCTGTAAAAGATTTTTGGTCCTCGTCGGATAAGGTTTGGGACATCCAATTTCGAAGGCACCTAAAGGATGCTGAGATTGATGAGCTAGCATCTCTCCTCCACAATCTTTCCTCCATCAGCCCTTCTACCAATCGGGATACTATTATTTGGAGTTTGGAATCACATGGACAATTCGCCACCTCCTCCCTCATTAAAGACATCCACCAAACAACAACATCACAGACAACTTCCTCTCTGTACAGTGCTATCTGGAAAGATCACTACCCAAGGAAGATAAAGATCTTCCTATGGGAAACTAGTCTCAATGCTATCAATACATAG
Coding sequence (CDS)
ATGGCCGGCATCTTACCTTGGCCTACCTCTACATGGCAAGCCTCAATCAGCATCTTTTTGGACCCGGTCATGGAGAAAGTGAGGAAAAGACTTAGTTCATGGGATCACTCCATCATCTCGAAAGGAGGTCAGCTCACCCTCATCCAAGCCACTTTATCCAATCTACCCACATATTACTTATCCATTTTCTCTATCCCAACTAAAGTGGCAAAGGATTTGGAAAAACTCATCCGAAATTTTTTGTGGAAGGGTTCAAACAACAACGGGGCACAAAATTTGGTTAGATGGGATCAAGTACAGAAACCAATTGAAGAAGGTGGGCTGGGTATATGCTGTATCAAGGACAAAAATCGGGCTCTTTTAGCCAAGTGGAGTTGGAGATTTCTTTTGGAAGAAACTGCCCTTTGGAGGAGAGTGATTTTGGCAAAATATGCCTTCTCCGACCACCGAAGCTTCCTTCCAAGGTTCTGGATTGATGTTTGGCTCACCAGAGAACCCCTCTGCCAAGCCTACCCCGTTCTATTTTTCTTACACTCCAGAAAGTTGGGCTCTGTAAAAGATTTTTGGTCCTCGTCGGATAAGGTTTGGGACATCCAATTTCGAAGGCACCTAAAGGATGCTGAGATTGATGAGCTAGCATCTCTCCTCCACAATCTTTCCTCCATCAGCCCTTCTACCAATCGGGATACTATTATTTGGAGTTTGGAATCACATGGACAATTCGCCACCTCCTCCCTCATTAAAGACATCCACCAAACAACAACATCACAGACAACTTCCTCTCTGTACAGTGCTATCTGGAAAGATCACTACCCAAGGAAGATAAAGATCTTCCTATGGGAAACTAGTCTCAATGCTATCAATACATAG
Protein sequence
MAGILPWPTSTWQASISIFLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETALWRRVILAKYAFSDHRSFLPRFWIDVWLTREPLCQAYPVLFFLHSRKLGSVKDFWSSSDKVWDIQFRRHLKDAEIDELASLLHNLSSISPSTNRDTIIWSLESHGQFATSSLIKDIHQTTTSQTTSSLYSAIWKDHYPRKIKIFLWETSLNAINT
Homology
BLAST of Moc08g35550 vs. NCBI nr
Match:
KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 218.0 bits (554), Expect = 1.1e-52
Identity = 117/312 (37.50%), Postives = 168/312 (53.85%), Query Frame = 0
Query: 15 SISIFLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLE 74
S S F D +++K++K+LSSW +S +SKGG++TLI +TL +LP Y LS+F +P +A+ +E
Sbjct: 489 SSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIE 548
Query: 75 KLIRNFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETA 134
RNFLW G++N +L+RW+QV P E+GGLGI + N ALL KW W+FL E+
Sbjct: 549 AYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEP 608
Query: 135 LWRRVILAKYAFSDHRSFLPR-----------------------------------FWID 194
LW+R+I++KY F R FW+D
Sbjct: 609 LWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLD 668
Query: 195 VWLTREPLCQAYPVLFFLHSRKLGSVKDFWSSSDKVWDIQFRRHLKDAEIDELASLLHNL 254
W PL A P LF L + K GSVKD W+ S K W+I R L+D E + ++ +L
Sbjct: 669 NWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASL 728
Query: 255 SSISPSTNRDTIIWSLESHGQFATSSLIKDIHQTTTSQTT--SSLYSAIWKDHYPRKIKI 290
+ P +W L S+ F T+S+ KD+ + + S T SLY +WK +P+K K
Sbjct: 729 PTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKF 788
BLAST of Moc08g35550 vs. NCBI nr
Match:
KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 216.9 bits (551), Expect = 2.4e-52
Identity = 116/312 (37.18%), Postives = 167/312 (53.53%), Query Frame = 0
Query: 15 SISIFLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLE 74
S S F D +++K++K+LSSW +S +SKGG++TLI +TL +LP Y LS+F +P +A+ +E
Sbjct: 583 SSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIE 642
Query: 75 KLIRNFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETA 134
RNFLW G++N +L+RW+QV P E+GGLGI + N ALL KW W+FL E+
Sbjct: 643 AYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEP 702
Query: 135 LWRRVILAKYAFSDHRSFLPR-----------------------------------FWID 194
LW+R+I++KY F R FW+D
Sbjct: 703 LWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLD 762
Query: 195 VWLTREPLCQAYPVLFFLHSRKLGSVKDFWSSSDKVWDIQFRRHLKDAEIDELASLLHNL 254
W PL P LF L + K GSVKD W+ S K W+I R L+D E + ++ +L
Sbjct: 763 NWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASL 822
Query: 255 SSISPSTNRDTIIWSLESHGQFATSSLIKDIHQTTTSQTT--SSLYSAIWKDHYPRKIKI 290
+ P +W L S+ F T+S+ KD+ + + S T SLY +WK +P+K K
Sbjct: 823 PTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKF 882
BLAST of Moc08g35550 vs. NCBI nr
Match:
KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 211.5 bits (537), Expect = 9.9e-51
Identity = 111/312 (35.58%), Postives = 168/312 (53.85%), Query Frame = 0
Query: 15 SISIFLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLE 74
S S F D V++K++K+LS+W +S +SKGG++TLI +TL +LP Y +S+F +P +A+ +E
Sbjct: 691 SSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLPIYQMSVFKVPKGIAQKIE 750
Query: 75 KLIRNFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETA 134
RNFLW G++N +L+RW+Q+ P E+GGLGI + N ALL KW W+FL E+
Sbjct: 751 ASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNSTNFALLCKWLWKFLTEKDP 810
Query: 135 LWRRVILAKY------AFSDHRSFLPR-----------------------------FWID 194
LW+R+I++KY +F H F FW+D
Sbjct: 811 LWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWLD 870
Query: 195 VWLTREPLCQAYPVLFFLHSRKLGSVKDFWSSSDKVWDIQFRRHLKDAEIDELASLLHNL 254
W PL A P LF L + K GSVK+FW+ S W + R L+D E + ++ +L
Sbjct: 871 NWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASL 930
Query: 255 SSISPSTNRDTIIWSLESHGQFATSSLIKDIHQTTTSQTT--SSLYSAIWKDHYPRKIKI 290
+ P+ +W+L S+ F T+S+ + I + S +LY +WK +P+K K
Sbjct: 931 PTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKF 990
BLAST of Moc08g35550 vs. NCBI nr
Match:
VVA30963.1 (Hypothetical predicted protein, partial [Prunus dulcis])
HSP 1 Score: 205.7 bits (522), Expect = 5.4e-49
Identity = 119/309 (38.51%), Postives = 166/309 (53.72%), Query Frame = 0
Query: 19 FLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIR 78
F +PV +KV KRL W + +SKGG+LTLIQA LS++P+YY+S+F +PT VA +E+L+R
Sbjct: 89 FWNPVKDKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPTGVAAKVEQLMR 148
Query: 79 NFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETALWRR 138
NFLW+G +LVRW++V K EEGGLGI ++++N AL AKW WRF LE +LW R
Sbjct: 149 NFLWEGLEEGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLETNSLWHR 208
Query: 139 VILAKYAFSD-----------------------HRSFLP------------RFWIDVWLT 198
+I +KY + SFL RFW D+WL
Sbjct: 209 IIKSKYGIDSNGWDTKQIVKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDLWLK 268
Query: 199 REPLCQAYPVLFFLHSRKLGSVKDFWSSSDKV--WDIQFRRHLKDAEIDELASLLHNLSS 258
L +P L L RK S+ F ++ + WD FRR+L +AEI E+ LL L +
Sbjct: 269 EGILKDLFPRLSSLSRRKNQSIARFANNHEMPLNWDFDFRRNLSEAEIAEVVILLDILGN 328
Query: 259 ISPSTNR-DTIIWSLESHGQFATSSLIKDIHQTTTSQTTSSLYSAIWKDHYPRKIKIFLW 290
+ +R D W +E G F+ S + TT + +S+IWK P KI+ F+W
Sbjct: 329 VRLYGSRPDRRSWEIEEQGSFSCKSFRSFLLSTT--RDVFPPFSSIWKAKTPPKIQFFVW 388
BLAST of Moc08g35550 vs. NCBI nr
Match:
TQD93576.1 (hypothetical protein C1H46_020784 [Malus baccata])
HSP 1 Score: 202.2 bits (513), Expect = 6.0e-48
Identity = 117/310 (37.74%), Postives = 164/310 (52.90%), Query Frame = 0
Query: 19 FLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIR 78
F DPV+EK+ KRL SW + +S+GG+LTLIQ+ L +LP YY+S+F IP V LEKL++
Sbjct: 59 FWDPVVEKMEKRLQSWKKAFLSRGGRLTLIQSVLGSLPIYYMSLFKIPCGVIGRLEKLMK 118
Query: 79 NFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETALWRR 138
FLW+G +LV+W+ V K EEGGLG+ ++++N ALLAKW WRF E +LW +
Sbjct: 119 GFLWEGVEEGKKNHLVKWEIVIKSKEEGGLGVGNLRNRNEALLAKWLWRFPKEPHSLWHK 178
Query: 139 VILAKYAFSDH--RSFLP---------------------------------RFWIDVWLT 198
VI +KY ++ +F P RFW D WL
Sbjct: 179 VIRSKYGLQNNGWNAFPPMRGSSRSPWKDISSGSQLFLHCCKFEVGNGERVRFWEDGWLE 238
Query: 199 REPLCQAYPVLFFL---HSRKLGSVKDFWSSSDKVWDIQFRRHLKDAEIDELASLLHNLS 258
PL + +P LF L H++ + S DF S++ W+ FRR+L +AEI+E A LL +
Sbjct: 239 GGPLKEQFPRLFLLSRMHNQNISSFADF-STNSLSWNFDFRRNLNEAEIEEAARLLQKVE 298
Query: 259 SISPSTNR-DTIIWSLESHGQFATSSLIKDIHQTTTSQTTSSLYSAIWKDHYPRKIKIFL 290
+ S +R D W LE+ F S + Q YS IWK P K+KI +
Sbjct: 299 EVRLSQSRTDNRRWKLEASRLFTCKSYRSFLSNNGIMQYFPP-YSQIWKSKVPPKVKILV 358
BLAST of Moc08g35550 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 125.6 bits (314), Expect = 9.4e-28
Identity = 84/311 (27.01%), Postives = 139/311 (44.69%), Query Frame = 0
Query: 23 VMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFLW 82
++E+V R+S W +S G+LTL +A LS++P + +S +P + L++L R FLW
Sbjct: 16 ILERVSSRMSGWREKTLSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLW 75
Query: 83 KGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETALWRRVILA 142
+ Q+LV+W +V P +EGGLG+ K NRAL++K WR L E+ +LW V+
Sbjct: 76 GSTAEKKKQHLVKWSKVCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQK 135
Query: 143 KY---AFSDHRSFLP---------------------------------RFWIDVWLTREP 202
KY D R +P RFW D W++ +P
Sbjct: 136 KYHVGEIRDSRWLIPKGSWSSTWRSIAIGLRDVVSHGVGWIPGDGQQIRFWTDRWVSGKP 195
Query: 203 LCQAYPVLFFLHSRKLGS------VKDFWSSSDKVWDI-QFRRHLKDAEIDELASLLHNL 262
L + L + + + KD W + WD + + + EL +++ +L
Sbjct: 196 LLE-------LDNGERPTDCDTVVAKDLWIPG-RGWDFAKIDPYTTNNTRLELRAVVLDL 255
Query: 263 SSISPSTNRDTIIWSLESHGQFATSSLIKDIH-QTTTSQTTSSLYSAIWKDHYPRKIKIF 290
+ + RD + W GQF+ S + + +S ++ +WK P ++K F
Sbjct: 256 VTGA----RDRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTF 314
BLAST of Moc08g35550 vs. ExPASy TrEMBL
Match:
A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)
HSP 1 Score: 218.0 bits (554), Expect = 5.1e-53
Identity = 117/312 (37.50%), Postives = 168/312 (53.85%), Query Frame = 0
Query: 15 SISIFLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLE 74
S S F D +++K++K+LSSW +S +SKGG++TLI +TL +LP Y LS+F +P +A+ +E
Sbjct: 489 SSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIE 548
Query: 75 KLIRNFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETA 134
RNFLW G++N +L+RW+QV P E+GGLGI + N ALL KW W+FL E+
Sbjct: 549 AYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHFVHSTNFALLCKWLWKFLTEKEP 608
Query: 135 LWRRVILAKYAFSDHRSFLPR-----------------------------------FWID 194
LW+R+I++KY F R FW+D
Sbjct: 609 LWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLD 668
Query: 195 VWLTREPLCQAYPVLFFLHSRKLGSVKDFWSSSDKVWDIQFRRHLKDAEIDELASLLHNL 254
W PL A P LF L + K GSVKD W+ S K W+I R L+D E + ++ +L
Sbjct: 669 NWNGNSPLSLAVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASL 728
Query: 255 SSISPSTNRDTIIWSLESHGQFATSSLIKDIHQTTTSQTT--SSLYSAIWKDHYPRKIKI 290
+ P +W L S+ F T+S+ KD+ + + S T SLY +WK +P+K K
Sbjct: 729 PTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKF 788
BLAST of Moc08g35550 vs. ExPASy TrEMBL
Match:
A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 1.1e-52
Identity = 116/312 (37.18%), Postives = 167/312 (53.53%), Query Frame = 0
Query: 15 SISIFLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLE 74
S S F D +++K++K+LSSW +S +SKGG++TLI +TL +LP Y LS+F +P +A+ +E
Sbjct: 583 SSSNFWDNILQKIQKKLSSWKYSQLSKGGRITLINSTLESLPIYQLSVFKVPKGIAQKIE 642
Query: 75 KLIRNFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETA 134
RNFLW G++N +L+RW+QV P E+GGLGI + N ALL KW W+FL E+
Sbjct: 643 AYWRNFLWNGTSNGHNISLIRWNQVVSPKEKGGLGIHSVHSTNFALLCKWLWKFLTEKEP 702
Query: 135 LWRRVILAKYAFSDHRSFLPR-----------------------------------FWID 194
LW+R+I++KY F R FW+D
Sbjct: 703 LWKRLIISKYDQEKMGRFPSRGKYSSNNSPWKAVTNCISWFYKNIGWKVNDGEDISFWLD 762
Query: 195 VWLTREPLCQAYPVLFFLHSRKLGSVKDFWSSSDKVWDIQFRRHLKDAEIDELASLLHNL 254
W PL P LF L + K GSVKD W+ S K W+I R L+D E + ++ +L
Sbjct: 763 NWNGNSPLSLVVPRLFALSTNKKGSVKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASL 822
Query: 255 SSISPSTNRDTIIWSLESHGQFATSSLIKDIHQTTTSQTT--SSLYSAIWKDHYPRKIKI 290
+ P +W L S+ F T+S+ KD+ + + S T SLY +WK +P+K K
Sbjct: 823 PTPLPDRGPSKPLWKLNSNNIFDTASIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKF 882
BLAST of Moc08g35550 vs. ExPASy TrEMBL
Match:
A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 4.8e-51
Identity = 111/312 (35.58%), Postives = 168/312 (53.85%), Query Frame = 0
Query: 15 SISIFLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLE 74
S S F D V++K++K+LS+W +S +SKGG++TLI +TL +LP Y +S+F +P +A+ +E
Sbjct: 691 SSSNFWDNVLQKIQKKLSNWKYSQLSKGGRITLINSTLESLPIYQMSVFKVPKGIAQKIE 750
Query: 75 KLIRNFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETA 134
RNFLW G++N +L+RW+Q+ P E+GGLGI + N ALL KW W+FL E+
Sbjct: 751 ASWRNFLWNGASNGHNISLIRWNQIVSPKEKGGLGIHSVNSTNFALLCKWLWKFLTEKDP 810
Query: 135 LWRRVILAKY------AFSDHRSFLPR-----------------------------FWID 194
LW+R+I++KY +F H F FW+D
Sbjct: 811 LWKRLIISKYDKEKMGSFPSHGKFSSNNSPWKAVTECISWFYKNISWKVNDGEDISFWLD 870
Query: 195 VWLTREPLCQAYPVLFFLHSRKLGSVKDFWSSSDKVWDIQFRRHLKDAEIDELASLLHNL 254
W PL A P LF L + K GSVK+FW+ S W + R L+D E + ++ +L
Sbjct: 871 NWNGNAPLSLAVPRLFALSTNKKGSVKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASL 930
Query: 255 SSISPSTNRDTIIWSLESHGQFATSSLIKDIHQTTTSQTT--SSLYSAIWKDHYPRKIKI 290
+ P+ +W+L S+ F T+S+ + I + S +LY +WK +P+K K
Sbjct: 931 PTPLPNRGHPKPLWNLNSNNIFDTASVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKF 990
BLAST of Moc08g35550 vs. ExPASy TrEMBL
Match:
A0A5E4FU33 (zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2B035216 PE=4 SV=1)
HSP 1 Score: 205.7 bits (522), Expect = 2.6e-49
Identity = 119/309 (38.51%), Postives = 166/309 (53.72%), Query Frame = 0
Query: 19 FLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIR 78
F +PV +KV KRL W + +SKGG+LTLIQA LS++P+YY+S+F +PT VA +E+L+R
Sbjct: 89 FWNPVKDKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPTGVAAKVEQLMR 148
Query: 79 NFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETALWRR 138
NFLW+G +LVRW++V K EEGGLGI ++++N AL AKW WRF LE +LW R
Sbjct: 149 NFLWEGLEEGKKCHLVRWERVTKSKEEGGLGIGSLRERNEALRAKWLWRFPLETNSLWHR 208
Query: 139 VILAKYAFSD-----------------------HRSFLP------------RFWIDVWLT 198
+I +KY + SFL RFW D+WL
Sbjct: 209 IIKSKYGIDSNGWDTKQIVKVSCRNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDLWLK 268
Query: 199 REPLCQAYPVLFFLHSRKLGSVKDFWSSSDKV--WDIQFRRHLKDAEIDELASLLHNLSS 258
L +P L L RK S+ F ++ + WD FRR+L +AEI E+ LL L +
Sbjct: 269 EGILKDLFPRLSSLSRRKNQSIARFANNHEMPLNWDFDFRRNLSEAEIAEVVILLDILGN 328
Query: 259 ISPSTNR-DTIIWSLESHGQFATSSLIKDIHQTTTSQTTSSLYSAIWKDHYPRKIKIFLW 290
+ +R D W +E G F+ S + TT + +S+IWK P KI+ F+W
Sbjct: 329 VRLYGSRPDRRSWEIEEQGSFSCKSFRSFLLSTT--RDVFPPFSSIWKAKTPPKIQFFVW 388
BLAST of Moc08g35550 vs. ExPASy TrEMBL
Match:
M5WJ76 (Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa015871mg PE=4 SV=1)
HSP 1 Score: 205.7 bits (522), Expect = 2.6e-49
Identity = 119/297 (40.07%), Postives = 165/297 (55.56%), Query Frame = 0
Query: 19 FLDPVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIR 78
F +PVMEKV KRL W + +SKGG+LTLIQA LS++P+YY+S+F +P VA +E+L+R
Sbjct: 1059 FWNPVMEKVEKRLQKWKRACLSKGGRLTLIQAVLSSIPSYYMSLFKMPIGVAAKVEQLMR 1118
Query: 79 NFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNRALLAKWSWRFLLEETALWRR 138
NFLW+G + +LVRW++V K EEGGLGI ++++ AL AKW WRF LE +LW R
Sbjct: 1119 NFLWEGLDEGKKCHLVRWERVTKSKEEGGLGIGSLRERIEALRAKWLWRFPLETNSLWHR 1178
Query: 139 VILAKYAFSD-----------HRSFLP------------RFWIDVWLTREPLCQAYPVLF 198
+I +KY + SFL RFW D+WL L +P L
Sbjct: 1179 IIKSKYGIDSNGNPWREISKGYNSFLQCCRFSVGNGEKIRFWEDLWLKEGILKDLFPRLS 1238
Query: 199 FLHSRKLGSVKDFWSSS--DKVWDIQFRRHLKDAEIDELASLLHNLSSISPSTNR-DTII 258
L RK S+ F ++ WD FRR+L +AEI E+ LL L ++ +R D
Sbjct: 1239 SLSRRKNQSIACFANNHVLPLNWDFDFRRNLSEAEIAEVVILLDILGNVRLYGSRPDRRS 1298
Query: 259 WSLESHGQFATSSLIKDIHQTTTSQTTSSLYSAIWKDHYPRKIKIFLWETSLNAINT 290
W +E G F+ S + TT + +S+IWK P KI+ F+W + INT
Sbjct: 1299 WEVEEQGSFSCKSFRSFLLSTT--RDVFPPFSSIWKAKTPPKIQFFVWLAANGRINT 1353
BLAST of Moc08g35550 vs. TAIR 10
Match:
AT3G24255.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )
HSP 1 Score: 90.1 bits (222), Expect = 3.1e-18
Identity = 69/282 (24.47%), Postives = 119/282 (42.20%), Query Frame = 0
Query: 22 PVMEKVRKRLSSWDHSIISKGGQLTLIQATLSNLPTYYLSIFSIPTKVAKDLEKLIRNFL 81
P++EK+R R+ W +S G+L LI + + +L +++S F +P+ K+++ + +FL
Sbjct: 44 PLVEKIRVRIGKWTARHLSFAGRLQLISSVIHSLTNFWMSAFRLPSACIKEIDSICSSFL 103
Query: 82 WKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIKDKNR---------ALLAKWSWRFLLEE 141
W G N + V W V P +EGGLGI +K+ N+ L W W+ +L+
Sbjct: 104 WSGPELNTKKAKVAWSDVCTPKDEGGLGIRSLKEANKGSFWSISGNTTLGSWMWKKILKH 163
Query: 142 TALWRRVILAKYAFSDHRSFLPRFWIDVWLTREPLCQAYPVLFFLHSRKLGSVKDFWSSS 201
AL + H FW D W + + V +G + S +
Sbjct: 164 RALASGFV----KHDIHNGSNTSFWFDNW---SKIGRLIDVTGHRGCIDMG-ITLHASVA 223
Query: 202 DKVWDIQFRRHLKDAEI---DELASLLHNLSSISPSTNRDTIIWSLESHGQ-FATSSLIK 261
+ V + + RRH D + D +A + H ++ DT+ W + +G F K
Sbjct: 224 EAVVNHRPRRHRHDTLLRIEDVIAEVRHQ----GLTSGEDTVRW--KGNGDIFKPCFNTK 283
Query: 262 DIHQTTTS-QTTSSLYSAIWKDHYPRKIKIFLWETSLNAINT 290
+ T + + Y +W H K + W N + T
Sbjct: 284 ETWAATREPKLKVNWYKGVWFSHATPKYSVLAWIAIKNRLTT 311
BLAST of Moc08g35550 vs. TAIR 10
Match:
AT4G29090.1 (Ribonuclease H-like superfamily protein )
HSP 1 Score: 68.6 bits (166), Expect = 9.7e-12
Identity = 64/282 (22.70%), Postives = 104/282 (36.88%), Query Frame = 0
Query: 55 LPTYYLSIFSIPTKVAKDLEKLIRNFLWKGSNNNGAQNLVRWDQVQKPIEEGGLGICCIK 114
LPTY ++ F +P V K + ++ +F W+ + WD + EGG+G I+
Sbjct: 3 LPTYTMACFLLPKTVCKQIISVLADFWWRNKQEAKGMHWKAWDHLSCYKAEGGIGFKDIE 62
Query: 115 DKNRALLAKWSWRFLLEETALWRRVILAKY---------AFSDHRSFLPR---------- 174
N ALL K WR L +L +V ++Y SF+ +
Sbjct: 63 AFNLALLGKQMWRMLSRPESLMAKVFKSRYFHKSDPLNAPLGSRPSFVWKSIHASQEILR 122
Query: 175 --------------FWIDVWLTREPL-----CQAYPVLFFLHSRKLGSVKDFWSSSDKVW 234
W WL +P Q P + + V D S + W
Sbjct: 123 QGARAVVGNGEDIIIWRHKWLDSKPASAALRMQRVPPQEYASVSSILKVSDLIDESGREW 182
Query: 235 DIQFRRHLKDAEIDELASLLHNLSSISPSTNR--DTIIWSLESHGQFATSS----LIKDI 288
R+ + + E+ L + + P R D+ W S G + S L + I
Sbjct: 183 ----RKDVIEMLFPEVERKL--IGELRPGGRRILDSYTWDYTSSGDYTVKSGYWVLTQII 242
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0044556.1 | 1.1e-52 | 37.50 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0041397.1 | 2.4e-52 | 37.18 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0039950.1 | 9.9e-51 | 35.58 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245... | [more] |
VVA30963.1 | 5.4e-49 | 38.51 | Hypothetical predicted protein, partial [Prunus dulcis] | [more] |
TQD93576.1 | 6.0e-48 | 37.74 | hypothetical protein C1H46_020784 [Malus baccata] | [more] |
Match Name | E-value | Identity | Description | |
P0C2F6 | 9.4e-28 | 27.01 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7TR15 | 5.1e-53 | 37.50 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TIB8 | 1.1e-52 | 37.18 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7T9I7 | 4.8e-51 | 35.58 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5E4FU33 | 2.6e-49 | 38.51 | zf-RVT domain-containing protein (Fragment) OS=Prunus dulcis OX=3755 GN=ALMOND_2... | [more] |
M5WJ76 | 2.6e-49 | 40.07 | Reverse transcriptase domain-containing protein (Fragment) OS=Prunus persica OX=... | [more] |
Match Name | E-value | Identity | Description | |
AT3G24255.1 | 3.1e-18 | 24.47 | RNA-directed DNA polymerase (reverse transcriptase)-related family protein | [more] |
AT4G29090.1 | 9.7e-12 | 22.70 | Ribonuclease H-like superfamily protein | [more] |