Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGACATTGAATGACTCAAATCATCAAGTTTGGAAAAGAAAGATGGAAAATGTTTTGTATGTGAGAGATCTTTATTTTCCTGTTTTTTCACTTGAGAAGCATGAAGATAAAACTAATTTAGAATGTGAAATACATCATAGAAAAATATGTGGCTTTATTAGACAGTGGGTAGAAGAAAATATTCTAAATCATTTTGGAGAAGAAACACATGTACGGACCATATGGAACAAACTTAAGTCGTTATATGCCTCGAAAACTGGTAACAATAAAATATTTCTGATCAAGCAAATGATAGCTTTGAAGTATCAAGATGGAACACCTATGTCAGATCACTTGAATACATTTCAAGGTATCATCAATAAGTCTGATGGAATGAAAATCAAGTTTGAGGATGAGATACAAAGGTTATGA
mRNA sequence
ATGGTGACATTGAATGACTCAAATCATCAAGTTTGGAAAAGAAAGATGGAAAATGTTTTGTATGTGAGAGATCTTTATTTTCCTGTTTTTTCACTTGAGAAGCATGAAGATAAAACTAATTTAGAATGTGAAATACATCATAGAAAAATATGTGGCTTTATTAGACAGTGGGTAGAAGAAAATATTCTAAATCATTTTGGAGAAGAAACACATGTACGGACCATATGGAACAAACTTAAGTCGTTATATGCCTCGAAAACTGGTAACAATAAAATATTTCTGATCAAGCAAATGATAGCTTTGAAGTATCAAGATGGAACACCTATGTCAGATCACTTGAATACATTTCAAGGTATCATCAATAAGTCTGATGGAATGAAAATCAAGTTTGAGGATGAGATACAAAGGTTATGA
Coding sequence (CDS)
ATGGTGACATTGAATGACTCAAATCATCAAGTTTGGAAAAGAAAGATGGAAAATGTTTTGTATGTGAGAGATCTTTATTTTCCTGTTTTTTCACTTGAGAAGCATGAAGATAAAACTAATTTAGAATGTGAAATACATCATAGAAAAATATGTGGCTTTATTAGACAGTGGGTAGAAGAAAATATTCTAAATCATTTTGGAGAAGAAACACATGTACGGACCATATGGAACAAACTTAAGTCGTTATATGCCTCGAAAACTGGTAACAATAAAATATTTCTGATCAAGCAAATGATAGCTTTGAAGTATCAAGATGGAACACCTATGTCAGATCACTTGAATACATTTCAAGGTATCATCAATAAGTCTGATGGAATGAAAATCAAGTTTGAGGATGAGATACAAAGGTTATGA
Protein sequence
MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEENILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGIINKSDGMKIKFEDEIQRL
Homology
BLAST of Moc08g32230 vs. NCBI nr
Match:
KAF5762160.1 (putative RNA-directed DNA polymerase [Helianthus annuus])
HSP 1 Score: 201.8 bits (512), Expect = 3.7e-48
Identity = 91/137 (66.42%), Postives = 111/137 (81.02%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
+V LN SN+ VWK KME++LYV+D Y PVF+ +K DKT+ E I HRK+CG+IRQWV++
Sbjct: 8 IVNLNGSNYHVWKGKMEDLLYVKDYYMPVFNTDKPGDKTDEEWNILHRKVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+LNH ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I LKY DGTP+SDHLN FQGII
Sbjct: 68 NVLNHISGETHARTLWNKLEELYARKTGNNKLFLIKQLINLKYNDGTPVSDHLNVFQGII 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMGIKFEDEVQGL 144
BLAST of Moc08g32230 vs. NCBI nr
Match:
KAF5795403.1 (putative RNA-directed DNA polymerase [Helianthus annuus])
HSP 1 Score: 201.8 bits (512), Expect = 3.7e-48
Identity = 91/137 (66.42%), Postives = 111/137 (81.02%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
+V LN SN+ VWK KME++LYV+D Y PVF+ +K DKT+ E I HRK+CG+IRQWV++
Sbjct: 8 IVNLNGSNYHVWKGKMEDLLYVKDYYMPVFNTDKPGDKTDEEWNILHRKVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+LNH ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I LKY DGTP+SDHLN FQGII
Sbjct: 68 NVLNHISGETHARTLWNKLEELYARKTGNNKLFLIKQLINLKYNDGTPVSDHLNVFQGII 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMGIKFEDEVQGL 144
BLAST of Moc08g32230 vs. NCBI nr
Match:
KAF5755123.1 (putative RNA-directed DNA polymerase [Helianthus annuus])
HSP 1 Score: 201.8 bits (512), Expect = 3.7e-48
Identity = 91/137 (66.42%), Postives = 111/137 (81.02%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
+V LN SN+ VWK KME++LYV+D Y PVF+ +K DKT+ E I HRK+CG+IRQWV++
Sbjct: 8 IVNLNGSNYHVWKGKMEDLLYVKDYYMPVFNTDKPGDKTDEEWNILHRKVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+LNH ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I LKY DGTP+SDHLN FQGII
Sbjct: 68 NVLNHISGETHARTLWNKLEELYARKTGNNKLFLIKQLINLKYNDGTPVSDHLNVFQGII 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMGIKFEDEVQGL 144
BLAST of Moc08g32230 vs. NCBI nr
Match:
KAF5774771.1 (putative RNA-directed DNA polymerase [Helianthus annuus])
HSP 1 Score: 201.8 bits (512), Expect = 3.7e-48
Identity = 91/137 (66.42%), Postives = 111/137 (81.02%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
+V LN SN+ VWK KME++LYV+D Y PVF+ +K DKT+ E I HRK+CG+IRQWV++
Sbjct: 8 IVNLNGSNYHVWKGKMEDLLYVKDYYMPVFNTDKPGDKTDEEWNILHRKVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+LNH ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I LKY DGTP+SDHLN FQGII
Sbjct: 68 NVLNHISGETHARTLWNKLEELYARKTGNNKLFLIKQLINLKYNDGTPVSDHLNVFQGII 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMGIKFEDEVQGL 144
BLAST of Moc08g32230 vs. NCBI nr
Match:
KAF5786946.1 (putative RNA-directed DNA polymerase [Helianthus annuus])
HSP 1 Score: 201.8 bits (512), Expect = 3.7e-48
Identity = 91/137 (66.42%), Postives = 111/137 (81.02%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
+V LN SN+ VWK KME++LYV+D Y PVF+ +K DKT+ E I HRK+CG+IRQWV++
Sbjct: 8 IVNLNGSNYHVWKGKMEDLLYVKDYYMPVFNTDKPGDKTDEEWNILHRKVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+LNH ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I LKY DGTP+SDHLN FQGII
Sbjct: 68 NVLNHISGETHARTLWNKLEELYARKTGNNKLFLIKQLINLKYNDGTPVSDHLNVFQGII 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMGIKFEDEVQGL 144
BLAST of Moc08g32230 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 76.6 bits (187), Expect = 2.4e-13
Identity = 42/130 (32.31%), Postives = 70/130 (53.85%), Query Frame = 0
Query: 6 DSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLE--CEIHHRKICGFIRQWVEENIL 65
D+ W+R+M ++L + L+ + K D E ++ R IR + ++++
Sbjct: 14 DNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDER-AASAIRLHLSDDVV 73
Query: 66 NHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGIINKS 125
N+ +E R IW +L+SLY SKT NK++L KQ+ AL +GT HLN F G+I +
Sbjct: 74 NNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQL 133
Query: 126 DGMKIKFEDE 134
+ +K E+E
Sbjct: 134 ANLGVKIEEE 142
BLAST of Moc08g32230 vs. ExPASy TrEMBL
Match:
A0A251SV86 (Putative zinc finger, CCHC-type, Ribonuclease H-like domain, GAG-pre-integrase domain protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr13g0415071 PE=4 SV=1)
HSP 1 Score: 201.8 bits (512), Expect = 1.8e-48
Identity = 91/137 (66.42%), Postives = 111/137 (81.02%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
+V LN SN+ VWK KME++LYV+D Y PVF+ +K DKT+ E I HRK+CG+IRQWV++
Sbjct: 8 IVNLNGSNYHVWKGKMEDLLYVKDYYMPVFNTDKPGDKTDEEWNILHRKVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+LNH ETH RT+WNKL+ LYA KTGNNK+FLIKQ+I LKY DGTP+SDHLN FQGII
Sbjct: 68 NVLNHISGETHARTLWNKLEELYARKTGNNKLFLIKQLINLKYNDGTPVSDHLNVFQGII 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMGIKFEDEVQGL 144
BLAST of Moc08g32230 vs. ExPASy TrEMBL
Match:
A0A5C7HIC1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017239 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.0e-48
Identity = 87/137 (63.50%), Postives = 113/137 (82.48%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
M+ LN SN+ VWK KME++LYV+D Y PVF+ +K EDKT+ E I HR++CG+IRQWV++
Sbjct: 8 MINLNGSNYHVWKGKMEDLLYVKDYYLPVFAEQKPEDKTDDEWTILHRQVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+ NH EETH R++WNKL+ LYA KTGNNK+FLIK+M+ LKY+DGTP+SDHLN +QGI+
Sbjct: 68 NVYNHVSEETHARSLWNKLEQLYARKTGNNKLFLIKKMLGLKYRDGTPLSDHLNAYQGIL 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMNIKFEDEVQGL 144
BLAST of Moc08g32230 vs. ExPASy TrEMBL
Match:
A0A5C7HL28 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_018345 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.0e-48
Identity = 87/137 (63.50%), Postives = 113/137 (82.48%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
M+ LN SN+ VWK KME++LYV+D Y PVF+ +K EDKT+ E I HR++CG+IRQWV++
Sbjct: 8 MINLNGSNYHVWKGKMEDLLYVKDYYLPVFAEQKPEDKTDDEWTILHRQVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+ NH EETH R++WNKL+ LYA KTGNNK+FLIK+M+ LKY+DGTP+SDHLN +QGI+
Sbjct: 68 NVYNHVSEETHARSLWNKLEQLYARKTGNNKLFLIKKMLGLKYRDGTPLSDHLNAYQGIL 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMNIKFEDEVQGL 144
BLAST of Moc08g32230 vs. ExPASy TrEMBL
Match:
A0A5C7IN93 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_005513 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.0e-48
Identity = 87/137 (63.50%), Postives = 113/137 (82.48%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
M+ LN SN+ VWK KME++LYV+D Y PVF+ +K EDKT+ E I HR++CG+IRQWV++
Sbjct: 8 MINLNGSNYHVWKGKMEDLLYVKDYYLPVFAEQKPEDKTDDEWTILHRQVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+ NH EETH R++WNKL+ LYA KTGNNK+FLIK+M+ LKY+DGTP+SDHLN +QGI+
Sbjct: 68 NVYNHVSEETHARSLWNKLEQLYARKTGNNKLFLIKKMLGLKYRDGTPLSDHLNAYQGIL 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMNIKFEDEVQGL 144
BLAST of Moc08g32230 vs. ExPASy TrEMBL
Match:
A0A5C7I9X1 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_006461 PE=4 SV=1)
HSP 1 Score: 200.7 bits (509), Expect = 4.0e-48
Identity = 87/137 (63.50%), Postives = 113/137 (82.48%), Query Frame = 0
Query: 1 MVTLNDSNHQVWKRKMENVLYVRDLYFPVFSLEKHEDKTNLECEIHHRKICGFIRQWVEE 60
M+ LN SN+ VWK KME++LYV+D Y PVF+ +K EDKT+ E I HR++CG+IRQWV++
Sbjct: 8 MINLNGSNYHVWKGKMEDLLYVKDYYLPVFAEQKPEDKTDDEWTILHRQVCGYIRQWVDD 67
Query: 61 NILNHFGEETHVRTIWNKLKSLYASKTGNNKIFLIKQMIALKYQDGTPMSDHLNTFQGII 120
N+ NH EETH R++WNKL+ LYA KTGNNK+FLIK+M+ LKY+DGTP+SDHLN +QGI+
Sbjct: 68 NVYNHVSEETHARSLWNKLEQLYARKTGNNKLFLIKKMLGLKYRDGTPLSDHLNAYQGIL 127
Query: 121 NKSDGMKIKFEDEIQRL 138
N+ GM IKFEDE+Q L
Sbjct: 128 NQLAGMNIKFEDEVQGL 144
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAF5762160.1 | 3.7e-48 | 66.42 | putative RNA-directed DNA polymerase [Helianthus annuus] | [more] |
KAF5795403.1 | 3.7e-48 | 66.42 | putative RNA-directed DNA polymerase [Helianthus annuus] | [more] |
KAF5755123.1 | 3.7e-48 | 66.42 | putative RNA-directed DNA polymerase [Helianthus annuus] | [more] |
KAF5774771.1 | 3.7e-48 | 66.42 | putative RNA-directed DNA polymerase [Helianthus annuus] | [more] |
KAF5786946.1 | 3.7e-48 | 66.42 | putative RNA-directed DNA polymerase [Helianthus annuus] | [more] |
Match Name | E-value | Identity | Description | |
P10978 | 2.4e-13 | 32.31 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A251SV86 | 1.8e-48 | 66.42 | Putative zinc finger, CCHC-type, Ribonuclease H-like domain, GAG-pre-integrase d... | [more] |
A0A5C7HIC1 | 4.0e-48 | 63.50 | Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_017239 PE=4 SV=1 | [more] |
A0A5C7HL28 | 4.0e-48 | 63.50 | CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01834... | [more] |
A0A5C7IN93 | 4.0e-48 | 63.50 | CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00551... | [more] |
A0A5C7I9X1 | 4.0e-48 | 63.50 | CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00646... | [more] |
Match Name | E-value | Identity | Description | |