Moc08g23100 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g23100
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr8: 16840012 .. 16841425 (+)
RNA-Seq Expression	Moc08g23100
Synteny	Moc08g23100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGGCCTCATGTCGCCCTGGGCACGGCCTCCCTACGAAAGGCGTTTGCATGGTTCAATACCAAGGTGAATGGAGAAAGTATTGTAAGTGGGAGAAGGACGTGTGACAACACATCCTACGGTCTCTTCCATTGGTTTGCAACGTGACGTTTAATACACGACCTGTGTGTACGGAGGGTCTGATGTATGGAATCAAAATCAGGGTGAACTCCATAAATGGATAAGGTCTTTTAGGTTTTATACCAATATTGTCCTTCTATATGGCGGGCTTATTAGGGCAGACCTCTGGGATCTGAAAATGGCAGGTTACACTTACGGGAAGTTGTTAAGTTAGTTAATAACTTATTGACCAAACAAACGGTGACTAACTGTTATAGGAATAAGAATTATTCTAGTGTAATATTTAGTTGAGAATGTCTCAATTTAGTGAAGGAGTAGCTAACTACCTCATGGTAGTTGTTGCTCTAAATCACTAAAGCATCGTTGCAAAAATAATCTTGACTGATAGCATACATTATTACTTTTTGCTAAAAATTGATTGGGTTTAATCGGTAGTGCAGTAGTCTATATAGATTTGTTTGTGTTTCAGCATGTCTACTTCTGTCATTGCCCTCCTTGCTGCCAAAAAACTTAACAGCAAGAATTACACACAATGGAAAATGAACCTTAACACGATACTCGTGGTAGATGATCTTAGGTTCATCTTAATTGAGGAGTGTCCTTAGGTTCTCTCGCCTAATGTAGCCTGAGCGAATCAGGATGCCTATGACAGATGGACCAAGGTCAATGACAAGACCAAGGTCTACATATTGGCAAGCATATCTAATGTGCTGGCCAAGAAGCATGAGAGCATGGTCACCATAAGGGAGATCAAGGACTCATTGTGGGACATGTTTGGACAACTGTCAATTCAAGCCCGAAATGATGCACTCAATTTCATTTACAATTCCCCCATGAAAAAGGGAACATCAATGCGAGAACATGTCTCAATCTTATGGTCCACTTTAATGTGGCTGAAGTGAATGAGGCTATCATAGACGAGGGGATCCAGTTTAGCTTTATCTTGGAATATATTCCAAACCGATTCCTACAATTGCGTAGCAATGTTGTGACAAACAAGATAGAGTACAACCTTACCACGCTCTTGGATGAGTTGTAGGTCTTTCAGTTTCTTATGAAAAAATAAGGGACATGAAGGGGAGGCAAATGTTGCAACCTCAAAACGGTTCCATCAAGGTTCGACCTCAGGAACCAAATCTGTGCATTCTTCTTATGGAAGTAAGACTTTCAAGAAGATGAAGAACAGTGGTAAGGGGCCTAAAGCTGACCCTACTGTTGTTGCCACCAATAAAGGCGGGGCCAACGTTGCAAACAAAGGAAAATGTTTCCGTTGTAACGTGGATGGGCACTAG

mRNA sequence

ATGCTCGGCCTCATGTCGCCCTGGGCACGGCCTCCCTACGAAAGGCGTTTGCATGGTTCAATACCAAGCATGTCTACTTCTGTCATTGCCCTCCTTGCTGCCAAAAAACTTAACAGCAAGAATTACACACAATGGAAAATGAACCTTAACACGATACTCGTGGTAGATGATCTTAGATGGACCAAGGTCAATGACAAGACCAAGGTCTACATATTGGCAAGCATATCTAATGTGCTGGCCAAGAAGCATGAGAGCATGGGACATGAAGGGGAGGCAAATGTTGCAACCTCAAAACGGTTCCATCAAGGTTCGACCTCAGGAACCAAATCTGTGCATTCTTCTTATGGAAGTAAGACTTTCAAGAAGATGAAGAACAGTGGTAAGGGGCCTAAAGCTGACCCTACTGTTGTTGCCACCAATAAAGGCGGGGCCAACGTTGCAAACAAAGGAAAATGTTTCCGTTGTAACGTGGATGGGCACTAG

Coding sequence (CDS)

ATGCTCGGCCTCATGTCGCCCTGGGCACGGCCTCCCTACGAAAGGCGTTTGCATGGTTCAATACCAAGCATGTCTACTTCTGTCATTGCCCTCCTTGCTGCCAAAAAACTTAACAGCAAGAATTACACACAATGGAAAATGAACCTTAACACGATACTCGTGGTAGATGATCTTAGATGGACCAAGGTCAATGACAAGACCAAGGTCTACATATTGGCAAGCATATCTAATGTGCTGGCCAAGAAGCATGAGAGCATGGGACATGAAGGGGAGGCAAATGTTGCAACCTCAAAACGGTTCCATCAAGGTTCGACCTCAGGAACCAAATCTGTGCATTCTTCTTATGGAAGTAAGACTTTCAAGAAGATGAAGAACAGTGGTAAGGGGCCTAAAGCTGACCCTACTGTTGTTGCCACCAATAAAGGCGGGGCCAACGTTGCAAACAAAGGAAAATGTTTCCGTTGTAACGTGGATGGGCACTAG

Protein sequence

MLGLMSPWARPPYERRLHGSIPSMSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDLRWTKVNDKTKVYILASISNVLAKKHESMGHEGEANVATSKRFHQGSTSGTKSVHSSYGSKTFKKMKNSGKGPKADPTVVATNKGGANVANKGKCFRCNVDGH

Homology

[Close]

BLAST of Moc08g23100 vs. NCBI nr
Match: KAA0059678.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 4.0e-17
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           MS+S+IALL   +L  +NY  WK  LN ILV+ DL                         
Sbjct: 1   MSSSIIALLKIDQLTDENYATWKSKLNMILVIADLRFVLMEECPPFPTKYASQSVRDAYD 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHESMGHEGEANVATSKRFHQGSTSGTKSVHSSYGSK 143
           RWTK NDK++++IL S+S++L+KKHE M  + EANVA S+RF   S+SG++ +       
Sbjct: 61  RWTKANDKSRLHILTSMSDILSKKHEIMIKQ-EANVAHSRRF-APSSSGSEKIQ------ 120

Query: 144 TFKKMKNSGKGPKADPTVVATNKGGANVANKGKCFRCNVDGH 161
             K+ +  GKG    PT+    KG   V  KGKCF CNVD H
Sbjct: 121 --KRKEGKGKG----PTITVEGKGKTKVVIKGKCFHCNVDEH 148

[Close]

BLAST of Moc08g23100 vs. NCBI nr
Match: TYK14981.1 (DNA-binding protein HEXBP-like [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16
Identity = 72/181 (39.78%), Postives = 89/181 (49.17%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           MS+S+IALL   +L  +NY  WK  LN ILV+ DL                         
Sbjct: 1   MSSSIIALLKKDQLTDENYVIWKSKLNMILVIADLRFVLMEECPPFPTKNAFQSVRDAYD 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHE-------------------SMGHEGEANVATSKR 143
           RWTK NDK ++YILA +SN+L+KKHE                   S+  + EANVA S+R
Sbjct: 61  RWTKANDKARLYILARLSNILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEANVAHSRR 120

Query: 144 FHQGSTSGTKSVHSSYGSKTFKKMKNSGKGPKADPTVVATNKGGANVANKGKCFRCNVDG 161
           F   S+SG+K +    G K        GKG    PTV    KG A VA KGKCF CNV+ 
Sbjct: 121 F-APSSSGSKKIQKRKGGK--------GKG----PTVAVEGKGKAKVAIKGKCFHCNVNE 168

[Close]

BLAST of Moc08g23100 vs. NCBI nr
Match: KAA0054278.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 97.4 bits (241), Expect = 1.2e-16
Identity = 72/181 (39.78%), Postives = 89/181 (49.17%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           MS+S+IALL   +L  +NY  WK  LN ILV+ DL                         
Sbjct: 1   MSSSIIALLKKDQLTDENYVIWKSKLNMILVIADLRFVLMEECPPFPTKNAFQSVRDAYD 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHE-------------------SMGHEGEANVATSKR 143
           RWTK NDK ++YILA +SN+L+KKHE                   S+  + EANVA S+R
Sbjct: 61  RWTKANDKARLYILARLSNILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEANVAHSRR 120

Query: 144 FHQGSTSGTKSVHSSYGSKTFKKMKNSGKGPKADPTVVATNKGGANVANKGKCFRCNVDG 161
           F   S+SG+K +    G K        GKG    PTV    KG A VA KGKCF CNV+ 
Sbjct: 121 F-APSSSGSKKIQKRKGGK--------GKG----PTVAVEGKGKAKVAIKGKCFHCNVNE 168

[Close]

BLAST of Moc08g23100 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-16
Identity = 77/229 (33.62%), Postives = 99/229 (43.23%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           M+T+ + +LAA KLN  NY  WK  +N +L++DDL                         
Sbjct: 1   MTTATLNMLAADKLNGNNYASWKNTINIVLIIDDLKFVLVEECPQVPAANATQTVREPYE 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHESM-------------------------------- 143
           RW K N+K + YILAS+S VLAKKHESM                                
Sbjct: 61  RWAKGNEKGRAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQINHDALKYIYNA 120

Query: 144 ----------------------------------GHEGEANVATS-KRFHQGSTSGTKSV 161
                                             G +GEANVATS ++FH+GSTSGTKS+
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQGQKGEANVATSTRKFHRGSTSGTKSM 180

[Close]

BLAST of Moc08g23100 vs. NCBI nr
Match: KAA0060254.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.0e-16
Identity = 77/229 (33.62%), Postives = 99/229 (43.23%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           M+T+ + +LAA KLN  NY  WK  +N +L++DDL                         
Sbjct: 1   MTTATLNMLAADKLNGNNYASWKNTINIVLIIDDLKFVLVEECPQVPAANATQTVREPYE 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHESM-------------------------------- 143
           RW K N+K + YILAS+S VLAKKHESM                                
Sbjct: 61  RWAKGNEKGRAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQINHDALKYIYNA 120

Query: 144 ----------------------------------GHEGEANVATS-KRFHQGSTSGTKSV 161
                                             G +GEANVATS ++FH+GSTSGTKS+
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQGQKGEANVATSTRKFHRGSTSGTKSM 180

[Close]

BLAST of Moc08g23100 vs. ExPASy TrEMBL
Match: A0A5A7UWW4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G001280 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.9e-17
Identity = 66/162 (40.74%), Postives = 88/162 (54.32%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           MS+S+IALL   +L  +NY  WK  LN ILV+ DL                         
Sbjct: 1   MSSSIIALLKIDQLTDENYATWKSKLNMILVIADLRFVLMEECPPFPTKYASQSVRDAYD 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHESMGHEGEANVATSKRFHQGSTSGTKSVHSSYGSK 143
           RWTK NDK++++IL S+S++L+KKHE M  + EANVA S+RF   S+SG++ +       
Sbjct: 61  RWTKANDKSRLHILTSMSDILSKKHEIMIKQ-EANVAHSRRF-APSSSGSEKIQ------ 120

Query: 144 TFKKMKNSGKGPKADPTVVATNKGGANVANKGKCFRCNVDGH 161
             K+ +  GKG    PT+    KG   V  KGKCF CNVD H
Sbjct: 121 --KRKEGKGKG----PTITVEGKGKTKVVIKGKCFHCNVDEH 148

[Close]

BLAST of Moc08g23100 vs. ExPASy TrEMBL
Match: A0A5D3CT18 (DNA-binding protein HEXBP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00120 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.6e-17
Identity = 72/181 (39.78%), Postives = 89/181 (49.17%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           MS+S+IALL   +L  +NY  WK  LN ILV+ DL                         
Sbjct: 1   MSSSIIALLKKDQLTDENYVIWKSKLNMILVIADLRFVLMEECPPFPTKNAFQSVRDAYD 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHE-------------------SMGHEGEANVATSKR 143
           RWTK NDK ++YILA +SN+L+KKHE                   S+  + EANVA S+R
Sbjct: 61  RWTKANDKARLYILARLSNILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEANVAHSRR 120

Query: 144 FHQGSTSGTKSVHSSYGSKTFKKMKNSGKGPKADPTVVATNKGGANVANKGKCFRCNVDG 161
           F   S+SG+K +    G K        GKG    PTV    KG A VA KGKCF CNV+ 
Sbjct: 121 F-APSSSGSKKIQKRKGGK--------GKG----PTVAVEGKGKAKVAIKGKCFHCNVNE 168

[Close]

BLAST of Moc08g23100 vs. ExPASy TrEMBL
Match: A0A5A7UH21 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G002360 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 5.6e-17
Identity = 72/181 (39.78%), Postives = 89/181 (49.17%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           MS+S+IALL   +L  +NY  WK  LN ILV+ DL                         
Sbjct: 1   MSSSIIALLKKDQLTDENYVIWKSKLNMILVIADLRFVLMEECPPFPTKNAFQSVRDAYD 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHE-------------------SMGHEGEANVATSKR 143
           RWTK NDK ++YILA +SN+L+KKHE                   S+  + EANVA S+R
Sbjct: 61  RWTKANDKARLYILARLSNILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEANVAHSRR 120

Query: 144 FHQGSTSGTKSVHSSYGSKTFKKMKNSGKGPKADPTVVATNKGGANVANKGKCFRCNVDG 161
           F   S+SG+K +    G K        GKG    PTV    KG A VA KGKCF CNV+ 
Sbjct: 121 F-APSSSGSKKIQKRKGGK--------GKG----PTVAVEGKGKAKVAIKGKCFHCNVNE 168

[Close]

BLAST of Moc08g23100 vs. ExPASy TrEMBL
Match: A0A5A7UYX7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.5e-17
Identity = 77/229 (33.62%), Postives = 99/229 (43.23%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           M+T+ + +LAA KLN  NY  WK  +N +L++DDL                         
Sbjct: 1   MTTATLNMLAADKLNGNNYASWKNTINIVLIIDDLKFVLVEECPQVPAANATQTVREPYE 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHESM-------------------------------- 143
           RW K N+K + YILAS+S VLAKKHESM                                
Sbjct: 61  RWAKGNEKGRAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQINHDALKYIYNA 120

Query: 144 ----------------------------------GHEGEANVATS-KRFHQGSTSGTKSV 161
                                             G +GEANVATS ++FH+GSTSGTKS+
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQGQKGEANVATSTRKFHRGSTSGTKSM 180

[Close]

BLAST of Moc08g23100 vs. ExPASy TrEMBL
Match: A0A5D3BHG7 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G00150 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.5e-17
Identity = 77/229 (33.62%), Postives = 99/229 (43.23%), Query Frame = 0


Query: 24  MSTSVIALLAAKKLNSKNYTQWKMNLNTILVVDDL------------------------- 83
           M+T+ + +LAA KLN  NY  WK  +N +L++DDL                         
Sbjct: 1   MTTATLNMLAADKLNGNNYASWKNTINIVLIIDDLKFVLVEECPQVPAANATQTVREPYE 60

Query: 84  RWTKVNDKTKVYILASISNVLAKKHESM-------------------------------- 143
           RW K N+K + YILAS+S VLAKKHESM                                
Sbjct: 61  RWAKGNEKGRAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQINHDALKYIYNA 120

Query: 144 ----------------------------------GHEGEANVATS-KRFHQGSTSGTKSV 161
                                             G +GEANVATS ++FH+GSTSGTKS+
Sbjct: 121 RMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQGQKGEANVATSTRKFHRGSTSGTKSM 180

The following BLAST results are available for this feature:

BLAST of Moc08g23100 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059678.1	4.0e-17	40.74	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14981.1	1.2e-16	39.78	DNA-binding protein HEXBP-like [Cucumis melo var. makuwa]	[more]
KAA0054278.1	1.2e-16	39.78	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ97618.1	2.0e-16	33.62	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0060254.1	2.0e-16	33.62	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Moc08g23100 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g23100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UWW4	1.9e-17	40.74	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00128...	[more]
A0A5D3CT18	5.6e-17	39.78	DNA-binding protein HEXBP-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UH21	5.6e-17	39.78	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G0023...	[more]
A0A5A7UYX7	9.5e-17	33.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G00180...	[more]
A0A5D3BHG7	9.5e-17	33.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold639G0015...	[more]

BLAST of Moc08g23100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..137
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g23100.1	Moc08g23100.1	mRNA