Moc08g23040 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g23040
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr8: 16799580 .. 16801214 (-)
RNA-Seq ExpressionMoc08g23040
SyntenyMoc08g23040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGGCGCCAGGCGCCTGGGAAGCCTGCAGAAAAACAGGTTTTCTTCCAACTTTGCCCTTAATGAAATGCGTCTTCCAATGCGTTTTGGTGGTTCCAACCGATGCATACGTGTAGAAGAAGTGTTCCACTATCAGTTTGAGCACGATTTGGTCAGTCAAAAGAGTTGGAAATGGGTGATTCACCATCGTTTTAGGACCTACCTAACCAATTCTGCACAGCTATAAATTCCAGCAACTTCTCCACCAAATTCATCAAGCCTTGCTTCCTTCTCTTGATCATTTTTAGTGTTTCTTTGTTGCTTTCTAAGTACTTTTGAGTTGCTTTCATTAGTTACTTTTGGTTTTTAAATCCCGAGCACTTTACATTCTTTTATTGAGCTTGTTTTGTTTCCATTTGTACTTAGTCATTTTTCTACTTATTCAAATATATAAAAGTCTAGCACTTTGCTTATTCTCTCTTTGCCTTTACTTTATTTTCAGTTAAGAGAGTTGTGTTTTTGGACGAAAGAGCACGTGACACTCTCCCTTGCTTGAAAGAGAAGGGCGAAGCTCTCAATCCCGATAAAAACTCTCCATTAGATAACTTTTGTTTTTCACACATGCATTCCACATTCAACCATTTTACTTGCTGTATTTTCTTCAATATGTCTTTCTAAATTCCCGTCTCTAGCCCGGTTATGGATAGTTAGCCTTTTATGTCTAAAAAGGGTTGCTAAGAAGTAGTGTTTTTACTTTCCATTCATTGCTCAACATGTTTTCCCGAAAAGTTAGGATTTAGAGAAGGCCACTGTAAGTCTTAACAAGTCAATACTGAAAAGGTTGCTTATTTGCATTGTTGAGTGATTAAACCGAGGAGAGGAGCGCCTTAGACATAAGGGTTTCGCTTAAGTAGCCTAGACATAGGACCTTAACCCGAGGTTGCGACTATTTCCATCCTAAAACTAAGATATATCTCATAATAGACATATTAGGGAATGTCTTAGGACTTTGAACTTGCTTAGACATAAGTAAAGTGAGAAGCGTAGTCGTTAGTTTCTAAAGTAAAATGCATATTATCCTTAGCATGTCCTTGATTCTTTGTTGGCTAACTTGAAGTAAATCGGGCTAGGTTTTATCATTATAAGTCCAAATCCCAAATCCAAAACCATTATTTGTGACCACTTCCCATTTTACAAGAATCACTCATTTCAACATTCACTATTCTTTAAAACTTCAGAGTTTGGAAATTATTTAGAAGTCCTTGAGGATCGATACTTGGATACTCCATCCATTTTATATTACTCTGACAGGTGTGCGCTTGCATCTATATAATTGTTACCACGCTTAGTGCGTGCGTTCAGCATAAACACCCAGTCAGTAGCCATGCGAGAATATGCAGCTACAGCCTTCTAGAACGTGGATTCAATCATTTTGAACCCTATTCTAGAAACTGCCAACCTCGAGCTTAAGCCGCTCATGTTTCAAATGCTTCAAACATTAGGACAATTTGGAGGGCGTGAACATGAAGATCCTCATGACCATCTCAAGACATTTCTTCAAATTGCAAATGCTTTTAGATTGCCTGATAACTCTGATGATGCTTTGAGATTAACTCTTTTCCCATTTTCTCTCAGGGATCAGGCGAGAACGTGA

mRNA sequence

ATGGGAGGCGCCAGGCGCCTGGGAAGCCTGCAGAAAAACAGGTTTTCTTCCAACTTTGCCCTTAATGAAATGCGTCTTCCAATGCGTTTTGGTGGTTCCAACCGATGCATACGTGTAGAAGAAGTGTTCCACTATCAGTTTGAGCACGATTTGGTCAGTCAAAAGAGTTGGAAATGGGTGATTCACCATCAAACTGCCAACCTCGAGCTTAAGCCGCTCATGTTTCAAATGCTTCAAACATTAGGACAATTTGGAGGGCGTGAACATGAAGATCCTCATGACCATCTCAAGACATTTCTTCAAATTGCAAATGCTTTTAGATTGCCTGATAACTCTGATGATGCTTTGAGATTAACTCTTTTCCCATTTTCTCTCAGGGATCAGGCGAGAACGTGA

Coding sequence (CDS)

ATGGGAGGCGCCAGGCGCCTGGGAAGCCTGCAGAAAAACAGGTTTTCTTCCAACTTTGCCCTTAATGAAATGCGTCTTCCAATGCGTTTTGGTGGTTCCAACCGATGCATACGTGTAGAAGAAGTGTTCCACTATCAGTTTGAGCACGATTTGGTCAGTCAAAAGAGTTGGAAATGGGTGATTCACCATCAAACTGCCAACCTCGAGCTTAAGCCGCTCATGTTTCAAATGCTTCAAACATTAGGACAATTTGGAGGGCGTGAACATGAAGATCCTCATGACCATCTCAAGACATTTCTTCAAATTGCAAATGCTTTTAGATTGCCTGATAACTCTGATGATGCTTTGAGATTAACTCTTTTCCCATTTTCTCTCAGGGATCAGGCGAGAACGTGA

Protein sequence

MGGARRLGSLQKNRFSSNFALNEMRLPMRFGGSNRCIRVEEVFHYQFEHDLVSQKSWKWVIHHQTANLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALRLTLFPFSLRDQART
Homology
[Close]
BLAST of Moc08g23040 vs. NCBI nr
Match: XP_022155016.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022160 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 4.7e-24
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 64   QTANLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALRLTLFPF 123
            + AN ELKPLMFQMLQTLGQFGGREH+DPHDHLKTF QIA AFR P+ +DDALRLTLFPF
Sbjct: 1021 KAANFELKPLMFQMLQTLGQFGGREHKDPHDHLKTFFQIAGAFRFPNITDDALRLTLFPF 1080

Query: 124  SLRDQART 132
            SL+D+ART
Sbjct: 1081 SLKDRART 1088

[Close]
BLAST of Moc08g23040 vs. NCBI nr
Match: XP_022158408.1 (uncharacterized protein LOC111024897, partial [Momordica charantia])

HSP 1 Score: 114.0 bits (284), Expect = 9.8e-22
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 67  NLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALRLTLFPFSLR 126
           N ELKP+MFQMLQT+G FGG+EHEDPHDHLK+F+QIANAFRLP  +DDA  LTLFPFSL+
Sbjct: 118 NFELKPMMFQMLQTIGHFGGQEHEDPHDHLKSFIQIANAFRLPGITDDAXXLTLFPFSLK 177

Query: 127 DQAR 131
           DQAR
Sbjct: 178 DQAR 181

[Close]
BLAST of Moc08g23040 vs. NCBI nr
Match: XP_022158836.1 (uncharacterized protein LOC111025302 [Momordica charantia])

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-19
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 64  QTANLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALRLTLFPF 123
           Q A  ELKP+MFQ+LQT+GQFGG  +EDP+ HLK+F++IANAF+LP NS+DALRL +FPF
Sbjct: 67  QAAQFELKPVMFQILQTMGQFGGLTNEDPYSHLKSFIEIANAFQLPGNSEDALRLKMFPF 126

Query: 124 SLRDQART 132
           SLRD ART
Sbjct: 127 SLRDGART 134

[Close]
BLAST of Moc08g23040 vs. NCBI nr
Match: XP_022150327.1 (uncharacterized protein LOC111018524 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 5.0e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 64  QTANLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALR 118
           + AN+ELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIA AFR P+ +DDALR
Sbjct: 62  EAANIELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIAGAFRFPNITDDALR 115

[Close]
BLAST of Moc08g23040 vs. NCBI nr
Match: XP_022159235.1 (uncharacterized protein LOC111025653 [Momordica charantia])

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 0 

Query: 66  ANLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALRLTLFPFSL 125
           A  E KP+M QML  +GQFGG EHEDP  HLK+F+++AN FRLP  SDDALRLTLFPFS+
Sbjct: 43  AKFEFKPMMLQMLNNIGQFGGLEHEDPRSHLKSFIKVANTFRLPGISDDALRLTLFPFSV 102

Query: 126 RDQA 130
             QA
Sbjct: 103 SGQA 106

[Close]
BLAST of Moc08g23040 vs. ExPASy TrEMBL
Match: A0A6J1DQF5 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022160 OS=Momordica charantia OX=3673 GN=LOC111022160 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 64   QTANLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALRLTLFPF 123
            + AN ELKPLMFQMLQTLGQFGGREH+DPHDHLKTF QIA AFR P+ +DDALRLTLFPF
Sbjct: 1021 KAANFELKPLMFQMLQTLGQFGGREHKDPHDHLKTFFQIAGAFRFPNITDDALRLTLFPF 1080

Query: 124  SLRDQART 132
            SL+D+ART
Sbjct: 1081 SLKDRART 1088

[Close]
BLAST of Moc08g23040 vs. ExPASy TrEMBL
Match: A0A6J1DW02 (uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024897 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.7e-22
Identity = 51/64 (79.69%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 67  NLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALRLTLFPFSLR 126
           N ELKP+MFQMLQT+G FGG+EHEDPHDHLK+F+QIANAFRLP  +DDA  LTLFPFSL+
Sbjct: 118 NFELKPMMFQMLQTIGHFGGQEHEDPHDHLKSFIQIANAFRLPGITDDAXXLTLFPFSLK 177

Query: 127 DQAR 131
           DQAR
Sbjct: 178 DQAR 181

[Close]
BLAST of Moc08g23040 vs. ExPASy TrEMBL
Match: A0A6J1E251 (uncharacterized protein LOC111025302 OS=Momordica charantia OX=3673 GN=LOC111025302 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.9e-20
Identity = 48/68 (70.59%), Postives = 59/68 (86.76%), Query Frame = 0 

Query: 64  QTANLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALRLTLFPF 123
           Q A  ELKP+MFQ+LQT+GQFGG  +EDP+ HLK+F++IANAF+LP NS+DALRL +FPF
Sbjct: 67  QAAQFELKPVMFQILQTMGQFGGLTNEDPYSHLKSFIEIANAFQLPGNSEDALRLKMFPF 126

Query: 124 SLRDQART 132
           SLRD ART
Sbjct: 127 SLRDGART 134

[Close]
BLAST of Moc08g23040 vs. ExPASy TrEMBL
Match: A0A6J1DAG1 (uncharacterized protein LOC111018524 OS=Momordica charantia OX=3673 GN=LOC111018524 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 2.4e-18
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0 

Query: 64  QTANLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALR 118
           + AN+ELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIA AFR P+ +DDALR
Sbjct: 62  EAANIELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIAGAFRFPNITDDALR 115

[Close]
BLAST of Moc08g23040 vs. ExPASy TrEMBL
Match: A0A6J1DY39 (uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025653 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.3e-16
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 0 

Query: 66  ANLELKPLMFQMLQTLGQFGGREHEDPHDHLKTFLQIANAFRLPDNSDDALRLTLFPFSL 125
           A  E KP+M QML  +GQFGG EHEDP  HLK+F+++AN FRLP  SDDALRLTLFPFS+
Sbjct: 43  AKFEFKPMMLQMLNNIGQFGGLEHEDPRSHLKSFIKVANTFRLPGISDDALRLTLFPFSV 102

Query: 126 RDQA 130
             QA
Sbjct: 103 SGQA 106

The following BLAST results are available for this feature:
BLAST of Moc08g23040 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155016.14.7e-2482.35LOW QUALITY PROTEIN: uncharacterized protein LOC111022160 [Momordica charantia][more]
XP_022158408.19.8e-2279.69uncharacterized protein LOC111024897, partial [Momordica charantia][more]
XP_022158836.12.0e-1970.59uncharacterized protein LOC111025302 [Momordica charantia][more]
XP_022150327.15.0e-1885.19uncharacterized protein LOC111018524 [Momordica charantia][more]
XP_022159235.12.8e-1667.19uncharacterized protein LOC111025653 [Momordica charantia][more]
BLAST of Moc08g23040 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g23040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DQF52.3e-2482.35LOW QUALITY PROTEIN: uncharacterized protein LOC111022160 OS=Momordica charantia... [more]
A0A6J1DW024.7e-2279.69uncharacterized protein LOC111024897 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1E2519.9e-2070.59uncharacterized protein LOC111025302 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DAG12.4e-1885.19uncharacterized protein LOC111018524 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A6J1DY391.3e-1667.19uncharacterized protein LOC111025653 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
BLAST of Moc08g23040 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g23040.1Moc08g23040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding