Moc08g22550 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g22550
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionGag/pol protein
Locationchr8: 16521894 .. 16525153 (+)
RNA-Seq ExpressionMoc08g22550
SyntenyMoc08g22550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATCGGTTGGAACCACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAAACTGTTTTCTGCAGCCTTCCCAGGCGCCTGGCGCCTCCTGAGGTATTTTTCCGTCTTTTTGCTTCTTTTGATTAATTTCCACTCCCAAATGGTCCTAAAATGTCATAAATATAATATAAGCCAACCACAAACCATCATATATAAATTTTGCATAAATTGGAACTCAAATGACCGAGAAAAGTCTGAAACAAAGCTAAAACATAGTAAAAACAGCATCTAAAACCTTCTTTTTACGCATGTAAACAAGCGTAATCAGTTCCAACCGATGCATACGTGTAGAAGAAGTGTTCCACTATCAGTTGGAGCACGATTTAGTCAGTCAAAGGAGTTGGAAATGGGTGATCCACCAGCGTTTTAGGACCTACCTAACCAATTCTGCACATCTATGAATTCCAGCAGCTTCTCCACCAAATTCATCAAGCCTTGCTTCCTTCTCTTGATCATTCTTAGTGTTTCTTTGTTGCTTTCTAAGTACTTTTGAGTTGCTTCATTAGTTGCTTTTAGTTTGTAAATCCCGAGCACTTTACATTCCTTTATTGAGCTTTGTTTTGTTTCCGTTGTTACTTAGTTATTTTCTACCTATTCAAATTTATAAAAATCCAGCACTTAACTTACTTTACTTTGCCTTTACATTATTTTTAATTAAGAGAATTGTGTCTTTGGAGGAAAGAGCACGTGACACTCCCCCTTGCTTGAAAGAGAAGGGCGAAGCTGTCAATCCCGAGCAAAACTCTCCGTTAGTTAACTTTTGTTTTTCACACATGGGTTTCAATTTCAACCATTTTACTTGCTGTATTTTCTTCAATATGTCTTTCTAAATTCCCGTCTCTAGCCTGGTTATGGATAGTTAGCCTTTTATTTCTGAAAAGGGTTGCTAAGAAGTAGTGTTTTTGCTTTCCACTCATTGCTCAACATGTTTTCCCAAAAGGTTAGGATTTATAGAAGGCCACTGTAAGTCTTAACAAGTCAATACTGAAAAGGTTGCTTATTTGCATTGTTGAGTGGTTGAACCGAGGAGAGGAGCGCCTTAGACATAAGGGTTCCGGTTAAGTAGCCTAGACTTAGGACCTTAACCCGAGGTTGCGACTATTTCCATCGTAAAACTAAGATATCTCTCATAATAGACATATTAGGGAATGTCTTAGGACTTTGAACTTGCTTAGACATAAGTCAAGTGAAAAGTGTAGTCGTTGGTTCCTAAAGTAAAATGTATATCGTCCTTAGCGTATCCTTGAATCTTTGTTGGCTAACTTGAAGTAATTCGGGCTAGGTTTTACCATTATAAGACCAAATCCCAAATCCAAAACCATTATTTGTTACCACTTCTCATTTTACAAGAATCACTCATTTCAACGTTCACTATTCATTAAAACTTTAGAGTTTGGAAATTATTTAGAAGTCCTTGAGGATCGATACTTGGATACTCCATCCATTTTATATTACTCTGACAGGTGTGCGCTTGCATCTATAGAATTGTTACCACGCTTAGTGCGTGCGTTCAGCATAACCCCAGTCAGTATGATCATGCATCATATAGTTATAAATGTTATAATGTATGTATGCATGTTTTATTTTCATAATTAATATAAGTGTTGTATTAATTAGATGAAAATAAAGTTACATTGAGCATGACATTTTTTTGGATAATATAATTGTATATTAATGTATGCTTTCAATGCATGTTTATAGTTTTAATTTCTTAAAATTTTATAAGAGTTATAAAATGTGGTAGATAGAAATTAAAATTTATAATAAAGAGTTGCATGCAAACATAAGGTCTAAGTTAATTAATTTTAAAGGGGTTTAAAATTAATTAGACCTTAGGTTATATCTTCTAATGTGATTAGGGGGTAGTTTTTTATATTTTTTTAACTAGGTTTAAAATGAAATAATAAAAGACTAAATATAAAATGTTGTCTATAATGGAACCCTGCCTAAGGAAGGTTCTGTCTAGGTTGAGGTATTTAAGCTGACCGTAAGGGAACACCTCTACCTGGGAACCGACCTGAGGGTTGAATTAGTCAATATATACAAGCAATAATGTCGTTGGTTTATTAAAGTGTTTAACGAACTAAAACATTATTGTACGACTTCCGATATAATAGTTATATTGGACCGACTAAAAATACACTTAGTTAATTTCACTTAGTCGGGATTTATCTAAGTAATATACCCTAGTCTTAGAATACTAAGTGGGAGCAAAGGAGAATATGTAATATACAACGTATATTTTTGATATACAAAGTATATATAACATAATTTACTCTCTCTCTCACGTTCTCCTTTAAATTCACGCTGTGAGTTCCATGCTCGGCCTCGTGTCGCCGTGGGCGCGGCCTCCCTACGGAAGGTGTTTGCATGGTTCAATATCGAGGTGAATGGAGATAGTGTTCATAATAAGTGGGAGAAAGACGTGTGACAACACATCCTGCGGTCTCCGCCATTGGTTTGCACCGTGAGGTTTCATACATGACCTGCGTGTCGTCCTGGAGCGACCATCCCTACAGAGGGTTCATTGTATGGAAATCAAAATCAAGGCAAACTTCAGAAATGGATAGGAGTCTCTTAGGTTTTGCTCCAATATTTTCCTTCCCTGCGGCAGGATTGTTGGGGTGGACCTCTGAGGTCCGAAAATGTTGGGTCACACTTACGAGGAGTTGTTAAGTTAGTTAGCAATTTCCTGACCAAATAAACGATGACTAAAATTTATAGGAATAAGAGTTATTCTGGTGTAAAATTTAGTTGAGAATGTCTCAATTCAGTGAAGGAGTACCTGTCCGCCCTACGGTGGCTGTTGCTCTAAATCACTGAAGCGTCGTTGCAAAACAATTTTGTTAGGGTGCTTAATTACTTTTGCTAAATTATGATTGGGTTTAAAAGGCTAATGCATGAAACTAATCTAGATTTGTTTTTACTTTCAACATGTCTACTTCTATTATTGCACTCTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAACAATGGAAGTCAAACCTGAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTGAAGCTCCTGCGCGTAATGCCACTGTGGCGATGCGCAACGCCTATGACAGGTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCTGATTACGCTTGTTTACATGCGTAA

mRNA sequence

ATGCATCGGTTGGAACCACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAAACTGTTTTCTGCAGCCTTCCCAGGCGCCTGGCGCCTCCTGAGGTGTGCGCTTGCATCTATAGAATTGTTACCACGCTTAGTGCGTGCGTTCAGCATAACCCCAGTCATGGGAGAAAGACGTGTGACAACACATCCTGCGGTCTCCGCCATTGGTTTGCACCGTGAGGTTTCATACATGACCTGCGTGTCGTCCTGGAGCGACCATCCCTACAGAGGGTTCATTGATTGTTGGGGTGGACCTCTGAGGTCCGAAAATGTTGGGTCACACTTACGAGGAGTTGTTAAATTTGTTTTTACTTTCAACATGTCTACTTCTATTATTGCACTCTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAACAATGGAAGTCAAACCTGAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTGAAGCTCCTGCGCGTAATGCCACTGTGGCGATGCGCAACGCCTATGACAGGTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCTGATTACGCTTGTTTACATGCGTAA

Coding sequence (CDS)

ATGCATCGGTTGGAACCACCAAAACGCATTGGAAGACGCGTTTCATTAAGGGCAAAGTTGGAAGAAAAACTGTTTTCTGCAGCCTTCCCAGGCGCCTGGCGCCTCCTGAGGTGTGCGCTTGCATCTATAGAATTGTTACCACGCTTAGTGCGTGCGTTCAGCATAACCCCAGTCATGGGAGAAAGACGTGTGACAACACATCCTGCGGTCTCCGCCATTGGTTTGCACCGTGAGGTTTCATACATGACCTGCGTGTCGTCCTGGAGCGACCATCCCTACAGAGGGTTCATTGATTGTTGGGGTGGACCTCTGAGGTCCGAAAATGTTGGGTCACACTTACGAGGAGTTGTTAAATTTGTTTTTACTTTCAACATGTCTACTTCTATTATTGCACTCTTAGCCGCGCAAAGACTTAATGGCGAAAATTACAAACAATGGAAGTCAAACCTGAACACTATTCTCGTGATAGATGATCTTAGGTTCGTCTTGCAAGAGGATTGTCCTGAAGCTCCTGCGCGTAATGCCACTGTGGCGATGCGCAACGCCTATGACAGGTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCTGATTACGCTTGTTTACATGCGTAA

Protein sequence

MHRLEPPKRIGRRVSLRAKLEEKLFSAAFPGAWRLLRCALASIELLPRLVRAFSITPVMGERRVTTHPAVSAIGLHREVSYMTCVSSWSDHPYRGFIDCWGGPLRSENVGSHLRGVVKFVFTFNMSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNAYDRWIKANDKAKVYILASISDVLADYACLHA
Homology
[Close]
BLAST of Moc08g22550 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 153.7 bits (387), Expect = 1.8e-33
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 125 MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNAYD 184
           MS SIIALLAAQ+LNGENY+QWKSNLNTILVIDDLRFVLQEDCP+AP  NATVA+RNAYD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 185 RWIKANDKAKVYILASISDVLA 207
           RWIK+NDKAKVYILASISDVLA
Sbjct: 61  RWIKSNDKAKVYILASISDVLA 82

[Close]
BLAST of Moc08g22550 vs. NCBI nr
Match: XP_022152352.1 (uncharacterized protein LOC111020095 [Momordica charantia])

HSP 1 Score: 152.5 bits (384), Expect = 4.0e-33
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 125 MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNAYD 184
           MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDL+FVLQEDCP+A A NATVA+R AYD
Sbjct: 1   MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLKFVLQEDCPQASAPNATVAVRIAYD 60

Query: 185 RWIKANDKAKVYILASISDVLA 207
           RWIKANDKAKVYILASISDVLA
Sbjct: 61  RWIKANDKAKVYILASISDVLA 82

[Close]
BLAST of Moc08g22550 vs. NCBI nr
Match: XP_022158062.1 (uncharacterized protein LOC111024637 [Momordica charantia])

HSP 1 Score: 145.6 bits (366), Expect = 4.9e-31
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 125 MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNAYD 184
           MSTSII LL AQ+LN ENYKQWKSN+NTIL+IDDLRFVLQEDCP+APA NATVA+RN YD
Sbjct: 1   MSTSIITLLVAQKLNDENYKQWKSNINTILMIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60

Query: 185 RWIKANDKAKVYILASISDVLA 207
           RWIKANDKAKV ILASISDVLA
Sbjct: 61  RWIKANDKAKVDILASISDVLA 82

[Close]
BLAST of Moc08g22550 vs. NCBI nr
Match: XP_022157449.1 (uncharacterized protein LOC111024145 [Momordica charantia])

HSP 1 Score: 132.9 bits (333), Expect = 3.3e-27
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 0 

Query: 123 FNMSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNA 182
           F+ STSIIALLAA++ N ENY QWK+NLNTILV+DDLRF+L E+CP+AP  NA  A R+A
Sbjct: 38  FSTSTSIIALLAAEKFNSENYTQWKTNLNTILVVDDLRFILTEECPQAPTPNAARASRDA 97

Query: 183 YDRWIKANDKAKVYILASISDVLA 207
           YDRWIKANDKA VYIL SISDVL+
Sbjct: 98  YDRWIKANDKANVYILTSISDVLS 121

[Close]
BLAST of Moc08g22550 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 131.3 bits (329), Expect = 9.6e-27
Identity = 59/82 (71.95%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 125 MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNAYD 184
           M+TSI+ LLA+++LNG+NY  WKSNLNTILV+DDLRFVL E+CP+APA NA   +R AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 185 RWIKANDKAKVYILASISDVLA 207
           RW+KANDKA+VYILAS++DVLA
Sbjct: 61  RWVKANDKARVYILASMTDVLA 82

[Close]
BLAST of Moc08g22550 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 8.8e-34
Identity = 74/82 (90.24%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 125 MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNAYD 184
           MS SIIALLAAQ+LNGENY+QWKSNLNTILVIDDLRFVLQEDCP+AP  NATVA+RNAYD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 185 RWIKANDKAKVYILASISDVLA 207
           RWIK+NDKAKVYILASISDVLA
Sbjct: 61  RWIKSNDKAKVYILASISDVLA 82

[Close]
BLAST of Moc08g22550 vs. ExPASy TrEMBL
Match: A0A6J1DFZ2 (uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020095 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.0e-33
Identity = 76/82 (92.68%), Postives = 79/82 (96.34%), Query Frame = 0 

Query: 125 MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNAYD 184
           MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDL+FVLQEDCP+A A NATVA+R AYD
Sbjct: 1   MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLKFVLQEDCPQASAPNATVAVRIAYD 60

Query: 185 RWIKANDKAKVYILASISDVLA 207
           RWIKANDKAKVYILASISDVLA
Sbjct: 61  RWIKANDKAKVYILASISDVLA 82

[Close]
BLAST of Moc08g22550 vs. ExPASy TrEMBL
Match: A0A6J1DW68 (uncharacterized protein LOC111024637 OS=Momordica charantia OX=3673 GN=LOC111024637 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 2.4e-31
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 0 

Query: 125 MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNAYD 184
           MSTSII LL AQ+LN ENYKQWKSN+NTIL+IDDLRFVLQEDCP+APA NATVA+RN YD
Sbjct: 1   MSTSIITLLVAQKLNDENYKQWKSNINTILMIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60

Query: 185 RWIKANDKAKVYILASISDVLA 207
           RWIKANDKAKV ILASISDVLA
Sbjct: 61  RWIKANDKAKVDILASISDVLA 82

[Close]
BLAST of Moc08g22550 vs. ExPASy TrEMBL
Match: A0A6J1DWI4 (uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024145 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 0 

Query: 123 FNMSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNA 182
           F+ STSIIALLAA++ N ENY QWK+NLNTILV+DDLRF+L E+CP+AP  NA  A R+A
Sbjct: 38  FSTSTSIIALLAAEKFNSENYTQWKTNLNTILVVDDLRFILTEECPQAPTPNAARASRDA 97

Query: 183 YDRWIKANDKAKVYILASISDVLA 207
           YDRWIKANDKA VYIL SISDVL+
Sbjct: 98  YDRWIKANDKANVYILTSISDVLS 121

[Close]
BLAST of Moc08g22550 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 4.7e-27
Identity = 59/82 (71.95%), Postives = 73/82 (89.02%), Query Frame = 0 

Query: 125 MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLRFVLQEDCPEAPARNATVAMRNAYD 184
           M+TSI+ LLA+++LNG+NY  WKSNLNTILV+DDLRFVL E+CP+APA NA   +R AYD
Sbjct: 1   MNTSIVQLLASEKLNGDNYSAWKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYD 60

Query: 185 RWIKANDKAKVYILASISDVLA 207
           RW+KANDKA+VYILAS++DVLA
Sbjct: 61  RWVKANDKARVYILASMTDVLA 82

The following BLAST results are available for this feature:
BLAST of Moc08g22550 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158197.11.8e-3390.24uncharacterized protein LOC111024734 [Momordica charantia][more]
XP_022152352.14.0e-3392.68uncharacterized protein LOC111020095 [Momordica charantia][more]
XP_022158062.14.9e-3186.59uncharacterized protein LOC111024637 [Momordica charantia][more]
XP_022157449.13.3e-2773.81uncharacterized protein LOC111024145 [Momordica charantia][more]
ADJ18449.19.6e-2771.95gag/pol protein, partial [Bryonia dioica][more]
BLAST of Moc08g22550 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g22550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DWL08.8e-3490.24uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DFZ22.0e-3392.68uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1DW682.4e-3186.59uncharacterized protein LOC111024637 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1DWI41.6e-2773.81uncharacterized protein LOC111024145 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
E2GK514.7e-2771.95Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1[more]
BLAST of Moc08g22550 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g22550.1Moc08g22550.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding