Moc08g22320 (gene) Bitter gourd (OHB3-1) v2

Overview
NameMoc08g22320
Typegene
OrganismMomordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
DescriptionRetrotrans_gag domain-containing protein
Locationchr8: 16389344 .. 16393085 (+)
RNA-Seq ExpressionMoc08g22320
SyntenyMoc08g22320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGGGTCGATGCACAGTACAAGGCCTTGGGGATAAATGGCAAGGTCGAACACCAAGCTTCTGTAGATGAATGTCGGGCCTTGGGAATAAATGGCAAGGGCCGGTACGATTCGTGGAGTTAGACTTGGAGAACTAACATAATGTGATTGGTTAGAGGTTGATTGGGGGCCAATGACCAATACGTTGAGTAGTAGTTGAGCCTTGGGGATAAATGTCAAGGTCCAACACCGAGAACCATAGAGAAGTGTCAATGCCTTAGCTACGCGAGGTCAAGGGTCGGTACGAATCAAAGGAGTAAGTCTTGGAGAAATCAAGAAAGAGAACTAGTGAGTTAAGATGTGAGGATGAGTTTGACATGCATGGTATATGTTTAGTTAAACTTATGCATAAACTGTTTCTAGTAATATGTTTCTTTCATTTAAGGTTCGAGATTAATGATAAGCATGATGTGTTGACTGTTTGATAAGCATGACACATTGTTTCCTTGATAAGCATGTTGTTTGTGTGTGACCCTTCGGATAAGGGCTGCTTACTGGGTACCGTGGTTGTACTCACCCATCTCTTTTTCCTCCACCAGTTTTGTAGGTATCGAGCTAACTCTTGGAACGGTGATGGCGACGAGGAGACTTGATCGAAAAGACCCTTAGCTGCGTTGTTCGCATTTATTTTCTTCTAGTTACGTTAGTTGCAGTGCTTGCATCTCATAGTTCAGTTGTTAGTAGTTGGTCCTGTTTAGTTTTCTAGTTAAACGGATGCTTTGAGATTGTCAGTTCATTACTCTTTGAGGTTATTAGTTTTGTTTAGCTTTTCGAACTGCGGGGTTGTAATCTATTAAGAATGATTATTGCCATTAGAGATGTTAATATTTGTATAGTTGATGGTTTATGGATAGTATAGGTTTCTTGGAGAAGTGTGGTTAATGTGAAGTTGGTATTAAATGGATTATCTGTAATAATTTGGGTTTTTGGTTGACTTTTAAGTGTTGTTGTTTTTTTTTTGTTCAAGCACTCATGCGTGTTGAAATCAGAGTAGGGCAGAGGAAGCGTGGTGGTTTTATCGTTTAGTCTTGTTTGTTGAAGTTAATTCTCTTGCTTAAGTGGACTTTTTAGGTAGTTTTAGTAATGGTCCCCATTCGAAAATGTCAAAAAATCTGAGGCGTTACAACCTTCCTTAGACAGGGTTCCCTTATAGACAATATTTTATATTTACCTTTTCATTCGTCGTTTTAAACCTATTTAAAACCAAAATAAAAAGTATATAACCTATGATATAATCAATTCAAAACTCCTTTGAAATTAATTATTGAAGACCTGGGCTTTGTTTTCAATTCTTGATTATAGACTTTAATTTATATTCCCCAAACTTATCACACTTATAAATTTAAAGAAATTGAAACTATAATCATGCATCAATGACATACATAAATATAACATTTATATTTACTAAAGTAGTGTAATGCTCATTACAACTTTATTTTCATCTAATTAATACAATGCTTATATTAATTAACCATGAAAATAAATCATGCTATCATACATTATAACTATTATATACATATGATGCATGAACATGTTTAACCTATGGTGGGATTTTAAACTATATAGCATACTTTATGTAACATATACAACTAATTAAGTATACATTCAAAATGCATAATAATTAAATAGCAAAATAGACCGGGTTTTGGCTTCCTATAAGAAGTGTAACAAAATAAAAAACATTTTTTTAATAAAACCCGGTGCCTAGGCGCCCGGACCTAGCACCGAGGCATCGTGGGATAGCGCCAAGGTGCTGCCCCCACTGCTGCAGGCTCGGGCTCTCGGGTTTCTGCAGCTCTGGCAGCGCCTAGGCGCCACTGTCCAGCCTCTAGGACGACACGAACTGACATACTCGATTTACAGGATTAAACGCCCAAAACAATGGCGTTTTACATGATAAAATCAACGGAAAAACTGTAAATCTAAAGCCAAAAATCGAAAACATCTATTTGCAAACCACAAACATCAAATGTATAGAAACACCCACCATTCCTTTCATTGTTATTCAAAACAAGATCGAAAGTAGAGCCTTGGCTCTGATACCAATTGAAGGGATCAGATCCCACAGCGGAAGCGCGCGAACGCTTGTGCTTCGATCTTGTTTTAGAATTACAACAAAGAAAGGACACATAAGCACGAATAACAAGAAAGTTAGTGATACATACCTTCGATCTTCTTTCCTTTAAAAATGTTCTAAATTAGTTATCATCCTCTTTATGAAATGCCTTAGTCAAAATGATTTGATTTTATACACGTTCGGGATTGCTCAGAATTGAGCTTGGCAATTTTTTGGGTTGGTTTCTAAAAACTTCTCTTTACGTCTTTTTTCCATTTGGCCAGTGGGAACTTGATTTATACACTCAAGTTCAACCCTGAGAATGGTGAGTTAGGTAAAATAATAGGAATCCAATATAGGATGTGACTTGGACACAAGCGCATAAAATATGGTCCTAGACATAGGCCCTCTGGCCCAGAAAGCAAATGAGTTGATAAATATTCCCTAGGTTTGTAATTACACATAGACATATGATTGTAGGTTACCGTAGCATCTGCAGCAACCAAAAGCGGTGGTAAAAGAGTAGAACTTAGATTCCCAAGAAAAGCAAGAATTGCTCCTGGTGCATTTTCCCAACAAAGTGTGTTTTCCATGTTTTGCATCAAAACTAAGGTAGGAAACAAAGAGGTTGAGTTTTATTAAATTGCTTGTTAGTTAAAACCCCAAACAACAACATTTCATCACATTTTTCTTCATAAATCACAATTGCATATTGGAACCATTTCACGACATTACTTGATTTTGAAAAGCAACAAGTCCCTGAGGATTCGACCTTGGATTACTTCCAAGTATTACTTGTGATCGAGTGCCCTTGCACGAGTCTCTAATCTTTTTAAAGGTAGAGAAAGTCCCAACGAGTTTTTGACGCCTTTGCTGGGGACTTATTTTTCAAGAACATATTCTTTTCAAGTGAATTGTTTCATGTGTGAATGTTGCATACCTCTGTCATTGGACTTAGTTGTTATATCTAACCTTTAAGAGAGTTGTGTATGAGCACAGGGTCTAGTTGGTTGACCTTTGGTCTAGAGATTGAAAGAACCCTTAAGAGGATAAGGTGTGAGCAGAGGTTGAGAAAAGAAAGAGAAAATCAAAAAGAGAAAGAAGTTGAAGAAGTAGAAGTTGAAGAAGAGACCATCGAGATGAATAGAAATCTACAAGATCCTCCACCTCCACAAAATCCACCTGTGAACGGATATATGACAGGTGAAGGAACATCAAACCGAGTAGGAGAAGTGCCTAATCCGACCCTTCAAGCAAATAACTGAGATGTAGCCATGCGGAACTATGTCACTCATGCGTTCCACAACTTAAATTAAGGGATAAGTAATCCCTTTACCCCAAGCCGCACAGTTCGAGCATAAGCCAGTCATGTTCTAGATGTCGCAGACGATGAGGCAGTTCGGAGGATTGACTAACGAAGATCCTTACTCTCATCTCATATCTTTTATTGAAATAGGTAATGCATTTCAACTTCCTGGTGTCTCTGAAGATGCACTAAGACTAAAAATGTTTCCTTTTTCTCTCAGGGACGGTGCAAGGACTTGGCTAAACGTGCTAGAACCAAATTCTATCACCACGTGGCCAGAACTGACGGAGAAATTTTTGGCAAAGTACCATACTTTGACCAGGAACACAGACCATTGA

mRNA sequence

ATGTCAAGGGTCGATGCACAGTACAAGGCCTTGGGGATAAATGGCAAGGTCGAACACCAAGCTTCTGTAGATGAATGTCGGGCCTTGGGAATAAATGGCAAGGGCCGTGGGAACTTGATTTATACACTCAAGTTCAACCCTGAGAATGGTGAGTTAGGGTCTAGTTGGTTGACCTTTGGTCTAGAGATTGAAAGAACCCTTAAGAGGATAAGGTGTGAGCAGAGGTTGAGAAAAGAAAGAGAAAATCAAAAAGAGAAAGAAGTTGAAGAAGTAGAAGTTGAAGAAGAGACCATCGAGATGAATAGAAATCTACAAGATCCTCCACCTCCACAAAATCCACCTGTGAACGGATATATGACAGGTAATGCATTTCAACTTCCTGGTGTCTCTGAAGATGCACTAAGACTAAAAATGTTTCCTTTTTCTCTCAGGGACGGTGCAAGGACTTGGCTAAACGTGCTAGAACCAAATTCTATCACCACGTGGCCAGAACTGACGGAGAAATTTTTGGCAAAGTACCATACTTTGACCAGGAACACAGACCATTGA

Coding sequence (CDS)

ATGTCAAGGGTCGATGCACAGTACAAGGCCTTGGGGATAAATGGCAAGGTCGAACACCAAGCTTCTGTAGATGAATGTCGGGCCTTGGGAATAAATGGCAAGGGCCGTGGGAACTTGATTTATACACTCAAGTTCAACCCTGAGAATGGTGAGTTAGGGTCTAGTTGGTTGACCTTTGGTCTAGAGATTGAAAGAACCCTTAAGAGGATAAGGTGTGAGCAGAGGTTGAGAAAAGAAAGAGAAAATCAAAAAGAGAAAGAAGTTGAAGAAGTAGAAGTTGAAGAAGAGACCATCGAGATGAATAGAAATCTACAAGATCCTCCACCTCCACAAAATCCACCTGTGAACGGATATATGACAGGTAATGCATTTCAACTTCCTGGTGTCTCTGAAGATGCACTAAGACTAAAAATGTTTCCTTTTTCTCTCAGGGACGGTGCAAGGACTTGGCTAAACGTGCTAGAACCAAATTCTATCACCACGTGGCCAGAACTGACGGAGAAATTTTTGGCAAAGTACCATACTTTGACCAGGAACACAGACCATTGA

Protein sequence

MSRVDAQYKALGINGKVEHQASVDECRALGINGKGRGNLIYTLKFNPENGELGSSWLTFGLEIERTLKRIRCEQRLRKERENQKEKEVEEVEVEEETIEMNRNLQDPPPPQNPPVNGYMTGNAFQLPGVSEDALRLKMFPFSLRDGARTWLNVLEPNSITTWPELTEKFLAKYHTLTRNTDH
Homology
[Close]
BLAST of Moc08g22320 vs. NCBI nr
Match: XP_022158836.1 (uncharacterized protein LOC111025302 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 9.4e-23
Identity = 71/166 (42.77%), Postives = 74/166 (44.58%), Query Frame = 0 

Query: 100 MNRNLQDPPPPQNPPVNGYMTG-------------------------------------- 159
           MNRN QDPPPPQNPPVNG M G                                      
Sbjct: 1   MNRNAQDPPPPQNPPVNGDMAGEEAANRVGEIPNLILLADNRDVAMRNYVTHAFHNLNSG 60

Query: 160 ----------------------------------------------NAFQLPGVSEDALR 182
                                                         NAFQLPG SEDALR
Sbjct: 61  INNPLPQAAQFELKPVMFQILQTMGQFGGLTNEDPYSHLKSFIEIANAFQLPGNSEDALR 120

[Close]
BLAST of Moc08g22320 vs. NCBI nr
Match: XP_022159127.1 (uncharacterized protein LOC111025557 [Momordica charantia])

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-21
Identity = 53/60 (88.33%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 122 NAFQLPGVSEDALRLKMFPFSLRDGARTWLNVLEPNSITTWPELTEKFLAKYHTLTRNTD 181
           NAFQLPGVSEDALRLKMFPFSLRDGA TW+NVLE N ITTW ELT+KFLAKYHTLTRN D
Sbjct: 24  NAFQLPGVSEDALRLKMFPFSLRDGAWTWJNVLEQNFITTWAELTDKFLAKYHTLTRNAD 83

[Close]
BLAST of Moc08g22320 vs. NCBI nr
Match: XP_024032803.1 (uncharacterized protein LOC112095314 [Morus notabilis])

HSP 1 Score: 85.5 bits (210), Expect = 5.2e-13
Identity = 38/58 (65.52%), Postives = 47/58 (81.03%), Query Frame = 0 

Query: 122 NAFQLPGVSEDALRLKMFPFSLRDGARTWLNVLEPNSITTWPELTEKFLAKYHTLTRN 180
           +AF+LPGV+ED LRLK+FP+SLRD AR WLN L P+S+T+W EL EKFL KY   T+N
Sbjct: 28  DAFKLPGVTEDTLRLKLFPYSLRDRARVWLNSLLPDSVTSWDELAEKFLMKYFPPTKN 85

[Close]
BLAST of Moc08g22320 vs. NCBI nr
Match: XP_030507648.1 (uncharacterized protein LOC115722545 [Cannabis sativa])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-12
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 122 NAFQLPGVSEDALRLKMFPFSLRDGARTWLNVLEPNSITTWPELTEKFLAKYHTLTRN 180
           ++F+L GVSE+ALRLK+FPFSLRD AR WLN L P+S+T W +L EKFL KY   TRN
Sbjct: 31  DSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNWNDLAEKFLRKYFPPTRN 88

[Close]
BLAST of Moc08g22320 vs. NCBI nr
Match: XP_030508936.1 (uncharacterized protein LOC115723589 [Cannabis sativa])

HSP 1 Score: 84.3 bits (207), Expect = 1.2e-12
Identity = 38/58 (65.52%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 122 NAFQLPGVSEDALRLKMFPFSLRDGARTWLNVLEPNSITTWPELTEKFLAKYHTLTRN 180
           ++F+L GVSE+ALRLK+FPFSLRD AR WLN L P+S+T W +L EKFL KY   TRN
Sbjct: 123 DSFKLQGVSEEALRLKLFPFSLRDRARAWLNTLPPDSVTNWNDLAEKFLRKYFPPTRN 180

[Close]
BLAST of Moc08g22320 vs. ExPASy TrEMBL
Match: A0A6J1E251 (uncharacterized protein LOC111025302 OS=Momordica charantia OX=3673 GN=LOC111025302 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.6e-23
Identity = 71/166 (42.77%), Postives = 74/166 (44.58%), Query Frame = 0 

Query: 100 MNRNLQDPPPPQNPPVNGYMTG-------------------------------------- 159
           MNRN QDPPPPQNPPVNG M G                                      
Sbjct: 1   MNRNAQDPPPPQNPPVNGDMAGEEAANRVGEIPNLILLADNRDVAMRNYVTHAFHNLNSG 60

Query: 160 ----------------------------------------------NAFQLPGVSEDALR 182
                                                         NAFQLPG SEDALR
Sbjct: 61  INNPLPQAAQFELKPVMFQILQTMGQFGGLTNEDPYSHLKSFIEIANAFQLPGNSEDALR 120

[Close]
BLAST of Moc08g22320 vs. ExPASy TrEMBL
Match: A0A6J1DYY9 (uncharacterized protein LOC111025557 OS=Momordica charantia OX=3673 GN=LOC111025557 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.6e-22
Identity = 54/60 (90.00%), Postives = 55/60 (91.67%), Query Frame = 0 

Query: 122 NAFQLPGVSEDALRLKMFPFSLRDGARTWLNVLEPNSITTWPELTEKFLAKYHTLTRNTD 181
           NAFQLPGVSEDALRLKMFPFSLRDGA TWLNVLE N ITTW ELT+KFLAKYHTLTRN D
Sbjct: 24  NAFQLPGVSEDALRLKMFPFSLRDGAWTWLNVLEQNFITTWAELTDKFLAKYHTLTRNAD 83

[Close]
BLAST of Moc08g22320 vs. ExPASy TrEMBL
Match: A0A6J1DQF5 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022160 OS=Momordica charantia OX=3673 GN=LOC111022160 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 9.5e-13
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 118  YMTGNAFQLPGVSEDALRLKMFPFSLRDGARTWLNVLEPNSITTWPELTEKFLAKYHTLT 177
            +    AF+ P +++DALRL +FPFSL+D ARTWLN+  P SITTW  L EKFL KY   T
Sbjct: 1057 FQIAGAFRFPNITDDALRLTLFPFSLKDRARTWLNLFPPGSITTWNSLVEKFLTKYFPPT 1116

Query: 178  RNTD 182
            R+ D
Sbjct: 1117 RHAD 1120

[Close]
BLAST of Moc08g22320 vs. ExPASy TrEMBL
Match: U5CUI2 (Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s04947p00003620 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 2.1e-12
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 122 NAFQLPGVSEDALRLKMFPFSLRDGARTWLNVLEPNSITTWPELTEKFLAKYHTLTRN 180
           ++F++ GVSE+ LRLK+FPFSLRD AR+WLN L P+S+T W +L EKFL KY   TRN
Sbjct: 84  DSFKIQGVSEEVLRLKLFPFSLRDRARSWLNTLPPDSVTNWNDLAEKFLRKYFPPTRN 141

[Close]
BLAST of Moc08g22320 vs. ExPASy TrEMBL
Match: A0A6J1DKX0 (uncharacterized protein LOC111021009 OS=Momordica charantia OX=3673 GN=LOC111021009 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 0 

Query: 118 YMTGNAFQLPGVSEDALRLKMFPFSLRDGARTWLNVLEPNSITTWPELTEKFLAKYHTLT 177
           +   N+F+LPG+S+DALRLK+FPFSL   A  WLN   P+SI +W  + +KFLAKY   T
Sbjct: 28  FQVANSFRLPGISDDALRLKLFPFSLAGQATAWLNAFLPDSINSWGTMVDKFLAKYFPPT 87

Query: 178 RNTD 182
           +N D
Sbjct: 88  KNAD 91

The following BLAST results are available for this feature:
BLAST of Moc08g22320 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022158836.19.4e-2342.77uncharacterized protein LOC111025302 [Momordica charantia][more]
XP_022159127.11.8e-2188.33uncharacterized protein LOC111025557 [Momordica charantia][more]
XP_024032803.15.2e-1365.52uncharacterized protein LOC112095314 [Morus notabilis][more]
XP_030507648.11.2e-1265.52uncharacterized protein LOC115722545 [Cannabis sativa][more]
XP_030508936.11.2e-1265.52uncharacterized protein LOC115723589 [Cannabis sativa][more]
BLAST of Moc08g22320 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Moc08g22320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1E2514.6e-2342.77uncharacterized protein LOC111025302 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DYY96.6e-2290.00uncharacterized protein LOC111025557 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DQF59.5e-1356.25LOW QUALITY PROTEIN: uncharacterized protein LOC111022160 OS=Momordica charantia... [more]
U5CUI22.1e-1262.07Retrotrans_gag domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
A0A6J1DKX01.1e-1153.13uncharacterized protein LOC111021009 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
BLAST of Moc08g22320 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..101
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 137..175
e-value: 2.1E-5
score: 24.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Moc08g22320.1Moc08g22320.1mRNA