Moc08g22050 (gene) Bitter gourd (OHB3-1) v2

Overview


Name	Moc08g22050
Type	gene
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Gag/pol protein
Location	chr8: 16214161 .. 16214490 (+)
RNA-Seq Expression	Moc08g22050
Synteny	Moc08g22050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACTTCCATTATTGCTCTTTCAGCAGTTGAAAAACTTAACGACAATAATTACAAACAATGGAAATCGAACCTAAACATTATACTTGGGATCGATGATCATAGGTTTGTCTTGCAAGAGGAATGTGCTCAAGCTCCTGCACCTAACGCCACTGTGTCAGTGCGCCACACCTATGATCGGTGGATCAAGGCCAATGATAAGACCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCTAAGAAGTGCGAGGACATGGTCACCGCCAAGGACATCATGGACTCGTTGCAAAGCATGTTTGGACAACCGTCCTCACAAACTTGA

mRNA sequence

ATGTCAACTTCCATTATTGCTCTTTCAGCAGTTGAAAAACTTAACGACAATAATTACAAACAATGGAAATCGAACCTAAACATTATACTTGGGATCGATGATCATAGGTTTGTCTTGCAAGAGGAATGTGCTCAAGCTCCTGCACCTAACGCCACTGTGTCAGTGCGCCACACCTATGATCGGTGGATCAAGGCCAATGATAAGACCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCTAAGAAGTGCGAGGACATGGTCACCGCCAAGGACATCATGGACTCGTTGCAAAGCATGTTTGGACAACCGTCCTCACAAACTTGA

Coding sequence (CDS)

ATGTCAACTTCCATTATTGCTCTTTCAGCAGTTGAAAAACTTAACGACAATAATTACAAACAATGGAAATCGAACCTAAACATTATACTTGGGATCGATGATCATAGGTTTGTCTTGCAAGAGGAATGTGCTCAAGCTCCTGCACCTAACGCCACTGTGTCAGTGCGCCACACCTATGATCGGTGGATCAAGGCCAATGATAAGACCAAGGTCTACATCTTGGCGAGCATATCTGATGTGCTTGCTAAGAAGTGCGAGGACATGGTCACCGCCAAGGACATCATGGACTCGTTGCAAAGCATGTTTGGACAACCGTCCTCACAAACTTGA

Protein sequence

MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYDRWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQT

Homology

[Close]

BLAST of Moc08g22050 vs. NCBI nr
Match: XP_022152352.1 (uncharacterized protein LOC111020095 [Momordica charantia])

HSP 1 Score: 171.4 bits (433), Expect = 4.3e-39
Identity = 87/108 (80.56%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MSTSIIAL A ++LN  NYKQWKSNLN IL IDD +FVLQE+C QA APNATV+VR  YD
Sbjct: 1   MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLKFVLQEDCPQASAPNATVAVRIAYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIKANDK KVYILASISDVLAKK ED +TAK+IMDSLQSMFGQPSSQ
Sbjct: 61  RWIKANDKAKVYILASISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQ 108

[Close]

BLAST of Moc08g22050 vs. NCBI nr
Match: XP_022158062.1 (uncharacterized protein LOC111024637 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 6.2e-38
Identity = 85/108 (78.70%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MSTSII L   +KLND NYKQWKSN+N IL IDD RFVLQE+C QAPAPNATV+VR+ YD
Sbjct: 1   MSTSIITLLVAQKLNDENYKQWKSNINTILMIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIKANDK KV ILASISDVLAKK E+ V  K+IMDSLQSMFGQPSSQ
Sbjct: 61  RWIKANDKAKVDILASISDVLAKKHENSVITKEIMDSLQSMFGQPSSQ 108

[Close]

BLAST of Moc08g22050 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 84/108 (77.78%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MS SIIAL A +KLN  NY+QWKSNLN IL IDD RFVLQE+C QAP  NATV+VR+ YD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIK+NDK KVYILASISDVLAKK ED VT K+IMDSLQSMFGQPS Q
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQ 108

[Close]

BLAST of Moc08g22050 vs. NCBI nr
Match: XP_022151295.1 (uncharacterized protein LOC111019259 [Momordica charantia])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 82/108 (75.93%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MS SIIAL A EKLN  NYKQ KSNLNIIL I+D RFVLQEE   APA +ATV+V   YD
Sbjct: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIKANDK +VYIL SIS+VLAKK E+MVTAK+IMDSLQSMFGQ SSQ
Sbjct: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQ 108

[Close]

BLAST of Moc08g22050 vs. NCBI nr
Match: XP_022158202.1 (uncharacterized protein LOC111024739 [Momordica charantia])

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-32
Identity = 75/108 (69.44%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MSTS+IAL A+EKLN  NY QWK+NLN IL +DD RFVL EEC Q P PNA  + R  YD
Sbjct: 1   MSTSVIALLAIEKLNGKNYTQWKTNLNAILVVDDLRFVLTEECRQPPTPNAVRASRDAYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIKANDK KVYI ASISDVLAKK + MVT ++IMDSL+ MFGQ S Q
Sbjct: 61  RWIKANDKAKVYIFASISDVLAKKHDRMVTTREIMDSLRDMFGQQSIQ 108

[Close]

BLAST of Moc08g22050 vs. ExPASy TrEMBL
Match: A0A6J1DFZ2 (uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020095 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.1e-39
Identity = 87/108 (80.56%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MSTSIIAL A ++LN  NYKQWKSNLN IL IDD +FVLQE+C QA APNATV+VR  YD
Sbjct: 1   MSTSIIALLAAQRLNGENYKQWKSNLNTILVIDDLKFVLQEDCPQASAPNATVAVRIAYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIKANDK KVYILASISDVLAKK ED +TAK+IMDSLQSMFGQPSSQ
Sbjct: 61  RWIKANDKAKVYILASISDVLAKKHEDTITAKEIMDSLQSMFGQPSSQ 108

[Close]

BLAST of Moc08g22050 vs. ExPASy TrEMBL
Match: A0A6J1DW68 (uncharacterized protein LOC111024637 OS=Momordica charantia OX=3673 GN=LOC111024637 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.0e-38
Identity = 85/108 (78.70%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MSTSII L   +KLND NYKQWKSN+N IL IDD RFVLQE+C QAPAPNATV+VR+ YD
Sbjct: 1   MSTSIITLLVAQKLNDENYKQWKSNINTILMIDDLRFVLQEDCPQAPAPNATVAVRNIYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIKANDK KV ILASISDVLAKK E+ V  K+IMDSLQSMFGQPSSQ
Sbjct: 61  RWIKANDKAKVDILASISDVLAKKHENSVITKEIMDSLQSMFGQPSSQ 108

[Close]

BLAST of Moc08g22050 vs. ExPASy TrEMBL
Match: A0A6J1DWL0 (uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024734 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 8.7e-38
Identity = 84/108 (77.78%), Postives = 91/108 (84.26%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MS SIIAL A +KLN  NY+QWKSNLN IL IDD RFVLQE+C QAP  NATV+VR+ YD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIK+NDK KVYILASISDVLAKK ED VT K+IMDSLQSMFGQPS Q
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQ 108

[Close]

BLAST of Moc08g22050 vs. ExPASy TrEMBL
Match: A0A6J1DAT1 (uncharacterized protein LOC111019259 OS=Momordica charantia OX=3673 GN=LOC111019259 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 5.0e-33
Identity = 82/108 (75.93%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MS SIIAL A EKLN  NYKQ KSNLNIIL I+D RFVLQEE   APA +ATV+V   YD
Sbjct: 1   MSASIIALLATEKLNSENYKQLKSNLNIILVINDLRFVLQEERPLAPALDATVAVHKFYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIKANDK +VYIL SIS+VLAKK E+MVTAK+IMDSLQSMFGQ SSQ
Sbjct: 61  RWIKANDKAEVYILTSISNVLAKKHENMVTAKEIMDSLQSMFGQSSSQ 108

[Close]

BLAST of Moc08g22050 vs. ExPASy TrEMBL
Match: A0A6J1DWL4 (uncharacterized protein LOC111024739 OS=Momordica charantia OX=3673 GN=LOC111024739 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 6.5e-33
Identity = 75/108 (69.44%), Postives = 84/108 (77.78%), Query Frame = 0


Query: 1   MSTSIIALSAVEKLNDNNYKQWKSNLNIILGIDDHRFVLQEECAQAPAPNATVSVRHTYD 60
           MSTS+IAL A+EKLN  NY QWK+NLN IL +DD RFVL EEC Q P PNA  + R  YD
Sbjct: 1   MSTSVIALLAIEKLNGKNYTQWKTNLNAILVVDDLRFVLTEECRQPPTPNAVRASRDAYD 60

Query: 61  RWIKANDKTKVYILASISDVLAKKCEDMVTAKDIMDSLQSMFGQPSSQ 109
           RWIKANDK KVYI ASISDVLAKK + MVT ++IMDSL+ MFGQ S Q
Sbjct: 61  RWIKANDKAKVYIFASISDVLAKKHDRMVTTREIMDSLRDMFGQQSIQ 108

The following BLAST results are available for this feature:

BLAST of Moc08g22050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152352.1	4.3e-39	80.56	uncharacterized protein LOC111020095 [Momordica charantia]	[more]
XP_022158062.1	6.2e-38	78.70	uncharacterized protein LOC111024637 [Momordica charantia]	[more]
XP_022158197.1	1.8e-37	77.78	uncharacterized protein LOC111024734 [Momordica charantia]	[more]
XP_022151295.1	1.0e-32	75.93	uncharacterized protein LOC111019259 [Momordica charantia]	[more]
XP_022158202.1	1.3e-32	69.44	uncharacterized protein LOC111024739 [Momordica charantia]	[more]

BLAST of Moc08g22050 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc08g22050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFZ2	2.1e-39	80.56	uncharacterized protein LOC111020095 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A6J1DW68	3.0e-38	78.70	uncharacterized protein LOC111024637 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DWL0	8.7e-38	77.78	uncharacterized protein LOC111024734 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1DAT1	5.0e-33	75.93	uncharacterized protein LOC111019259 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A6J1DWL4	6.5e-33	69.44	uncharacterized protein LOC111024739 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of Moc08g22050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 12..106
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 12..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Moc08g22050.1	Moc08g22050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding